| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024920
Identifier: 238024920
GI number: 238024920
Start: 1987870
End: 1988991
Strand: Direct
Name: 238024920
Synonym: bglu_2g15650
Alternate gene names: NA
Gene position: 1987870-1988991 (Clockwise)
Preceding gene: 238024919
Following gene: 238024922
Centisome position: 70.31
GC content: 72.55
Gene sequence:
>1122_bases ATGCTGAATTTTTCGCGGCCCGCGCTGGCTTTTTTCCTTGCGTGCTGCGTGGCCCTCGCGGGCATCGGCTGCGCGACGCC GTCGTGCGCTGCCGCGCCCACCGTCGACGTGTTCGGCCAGCCGATCCGGCCGGCCTCGTCGGCCTCCGCCACGCCAGCCG CGCCGCCCGCGCCCGAGCCCGAGGCGCGGCACGCGCTGGTGCTGCCGGAATTCGCGCGCACGGTGCTGGTGACCACGCTG ATCTGGCAGGGCAGGCTCAACGCGCACATCGCCGACGTCGCCGCGCAATTGCGGCGCGACGCCTCGCCGTGGGCCTGGCT GACGCTGCTGGCCGTGTCGTTCGCCTACGGCATGCTGCATGCGATCGGGCCGGGGCACGGCAAGCTGGTGGCCGGCGCCT ATCTCGGCTCGCGGCGCACGCGCGTGGCGCAGGCGATCGGCCTGGCAAGCTGGGGCGCGGCCGTGCAGGCGATGAGCGCC ATCGTGCTGGTGTTCGGCGCGGCATGGTTCGCGCAGGAGGGCATGTCGAACGTGCTGTCGAACGCGGCGTCGCTCGACGT CGTCAGCTACCTGCTGCTGTGCATGGCCGGCCTCTTCATGCTCTACAACACGCTGACGCGCCGCGATTGCTGCGTCGAAC CCGGCGCGGCCAGGCTCGTGCCCGACGCACGCGACATCGGACGCGAATCCGACGGCAACACACCCGCCTACCTCGGCGCG AAGCTGCGCGTGCATGCCCGCTCATCGCGCCGCGCGATGGTGGCCAACCCGTCGACGTGGACGGTGACACTGCAGATTCT CGCGACCGGCTTCGCCTCGGGCGTGCGGCCCTGCGTCGGCTCGATCTTCGTGCTGATCGCGTCGGTGACGGCGCGCGCGC CGTGGATCGGCATCGCGGCCGCATTCGCCATCGCCGCCGGTGTGGCCGTGACGGTGACGCTGTTCGGCCTCGGCGCGATC GGCGCGAACCGCTTCGTCATGGGGCGCGGCATCCGCCTGCGGGCGCGGCTGCAGACCGCGCAGCGCGTGGTGGGGATCGC CGGCGCGGCGGCGATCGTGCTGTTCGGGGCGGTGCAGGCGGCGTTGATCTCGATGGGGTATGCGCCGCCCGGGCTGAGCT GA
Upstream 100 bases:
>100_bases TGGAAGGCCGTCCCGCCGCCACCTGCACCGCGAAGGCGTTCCAGGATCGCGCGCATCCCATCTTCAACGGCCTCTATCTA CCGCAGGCATTTGCCTTGTC
Downstream 100 bases:
>100_bases ATTTCCCACGATCGGTCGCGCGCGGGCGCGCTTTGATCGCCGCCGCGGCCACATCGGCATCAGTGGCGCCTCGGGATGTA CGGCTTCGAAGGGCGCTGTC
Product: High-affinity nickel-transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 373; Mature: 373
Protein sequence:
>373_residues MLNFSRPALAFFLACCVALAGIGCATPSCAAAPTVDVFGQPIRPASSASATPAAPPAPEPEARHALVLPEFARTVLVTTL IWQGRLNAHIADVAAQLRRDASPWAWLTLLAVSFAYGMLHAIGPGHGKLVAGAYLGSRRTRVAQAIGLASWGAAVQAMSA IVLVFGAAWFAQEGMSNVLSNAASLDVVSYLLLCMAGLFMLYNTLTRRDCCVEPGAARLVPDARDIGRESDGNTPAYLGA KLRVHARSSRRAMVANPSTWTVTLQILATGFASGVRPCVGSIFVLIASVTARAPWIGIAAAFAIAAGVAVTVTLFGLGAI GANRFVMGRGIRLRARLQTAQRVVGIAGAAAIVLFGAVQAALISMGYAPPGLS
Sequences:
>Translated_373_residues MLNFSRPALAFFLACCVALAGIGCATPSCAAAPTVDVFGQPIRPASSASATPAAPPAPEPEARHALVLPEFARTVLVTTL IWQGRLNAHIADVAAQLRRDASPWAWLTLLAVSFAYGMLHAIGPGHGKLVAGAYLGSRRTRVAQAIGLASWGAAVQAMSA IVLVFGAAWFAQEGMSNVLSNAASLDVVSYLLLCMAGLFMLYNTLTRRDCCVEPGAARLVPDARDIGRESDGNTPAYLGA KLRVHARSSRRAMVANPSTWTVTLQILATGFASGVRPCVGSIFVLIASVTARAPWIGIAAAFAIAAGVAVTVTLFGLGAI GANRFVMGRGIRLRARLQTAQRVVGIAGAAAIVLFGAVQAALISMGYAPPGLS >Mature_373_residues MLNFSRPALAFFLACCVALAGIGCATPSCAAAPTVDVFGQPIRPASSASATPAAPPAPEPEARHALVLPEFARTVLVTTL IWQGRLNAHIADVAAQLRRDASPWAWLTLLAVSFAYGMLHAIGPGHGKLVAGAYLGSRRTRVAQAIGLASWGAAVQAMSA IVLVFGAAWFAQEGMSNVLSNAASLDVVSYLLLCMAGLFMLYNTLTRRDCCVEPGAARLVPDARDIGRESDGNTPAYLGA KLRVHARSSRRAMVANPSTWTVTLQILATGFASGVRPCVGSIFVLIASVTARAPWIGIAAAFAIAAGVAVTVTLFGLGAI GANRFVMGRGIRLRARLQTAQRVVGIAGAAAIVLFGAVQAALISMGYAPPGLS
Specific function: Unknown
COG id: COG2215
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38561; Mature: 38561
Theoretical pI: Translated: 10.69; Mature: 10.69
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNFSRPALAFFLACCVALAGIGCATPSCAAAPTVDVFGQPIRPASSASATPAAPPAPEP CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC EARHALVLPEFARTVLVTTLIWQGRLNAHIADVAAQLRRDASPWAWLTLLAVSFAYGMLH CCCEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH AIGPGHGKLVAGAYLGSRRTRVAQAIGLASWGAAVQAMSAIVLVFGAAWFAQEGMSNVLS HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NAASLDVVSYLLLCMAGLFMLYNTLTRRDCCVEPGAARLVPDARDIGRESDGNTPAYLGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCEEECC KLRVHARSSRRAMVANPSTWTVTLQILATGFASGVRPCVGSIFVLIASVTARAPWIGIAA EEEEEECCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH AFAIAAGVAVTVTLFGLGAIGANRFVMGRGIRLRARLQTAQRVVGIAGAAAIVLFGAVQA HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALISMGYAPPGLS HHHHHCCCCCCCC >Mature Secondary Structure MLNFSRPALAFFLACCVALAGIGCATPSCAAAPTVDVFGQPIRPASSASATPAAPPAPEP CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC EARHALVLPEFARTVLVTTLIWQGRLNAHIADVAAQLRRDASPWAWLTLLAVSFAYGMLH CCCEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH AIGPGHGKLVAGAYLGSRRTRVAQAIGLASWGAAVQAMSAIVLVFGAAWFAQEGMSNVLS HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NAASLDVVSYLLLCMAGLFMLYNTLTRRDCCVEPGAARLVPDARDIGRESDGNTPAYLGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCEEECC KLRVHARSSRRAMVANPSTWTVTLQILATGFASGVRPCVGSIFVLIASVTARAPWIGIAA EEEEEECCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH AFAIAAGVAVTVTLFGLGAIGANRFVMGRGIRLRARLQTAQRVVGIAGAAAIVLFGAVQA HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALISMGYAPPGLS HHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA