| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024885
Identifier: 238024885
GI number: 238024885
Start: 1937279
End: 1938403
Strand: Reverse
Name: 238024885
Synonym: bglu_2g15280
Alternate gene names: NA
Gene position: 1938403-1937279 (Counterclockwise)
Preceding gene: 238024888
Following gene: 238024882
Centisome position: 68.56
GC content: 73.78
Gene sequence:
>1125_bases ATGACTTCCGTTACCCGCCGGCTCGGCCGCCTGCTCGGGATGGCCGCCGCAAGACGCTCGCGGGCGTGGGCTGCGGCGTC GCCGCAGCACGACGGCGAGCGCTTTCGCAACCTGCGGCCGCGCCCGGCGGAGGGCGCAGGCAAGAGGTTGTCGATCGCCT GGAACGTGCTCTTCAAGAAGCCGGGCGGCACGGCGCCGGCCGCCGCGCTGCCGGTGGACGCGCTCACGCGCGCCGGGCTC GAGGCCGCGCCCGACCGGAGCCTGTTCCGGCTCGGCCACTCGACCCTGCTGCTGAAGCTGCGCGGCCGCTTCTGGCTGAC CGATCCGGTGTTCGCCGAGCGCGCCTCGCCGTTGCGGCGCTTCGGCCCGAAGCGCTTCCACGCGCCGCCTGTCGCACTGG CGGACCTGCCGCCGCTGGCCGGCGTGATCCTCTCGCACGACCACTACGATCACCTCGATCGCGACACGGTGCTCGCGCTC GCGGCCGGCACCGGCGTGTTCCTGACGCCGCTCGGCGTCGGCGACCGGCTGATCGAATGGGGCATTGACGCGGCGAAGGT GCGCCAGTTCGACTGGTGGCAGGGCACCGAACTGCACGGCGTCGCGTTCACGGCCACGCCCGCGCAGCATTTCTCGGGGC GCAGCCTGTTCGACGGCGATCGCACGCTGTGGGCCTCGTGGACCATCGTCGAGGGCGGCCTGCGCGTGTTCTTCAGCGGC GACACCGGCTATTTCGACGGCTTTCGCGAGATCGGCGAGCGCTGCGGCCCGTTCGACGTGACGCTGCTGGAGACGGGCGC CTACGACGCACAATGGCCCTACGTCCACATGCAGCCCGAGCAGACCGTGCAGGCCCACGTGGACCTGCGCGGCCGCTGGC TGGTGCCGGTCCACAACGGCACCTTCGATCTGGCGATGCACCGCTGGCAGGAGCCGTTCGAGCGCGTGTTCGGGCTCGCC GCCGCGCGCGGGATCGCGCTCGCCACGCCGCGCATGGGCGAGCGGCTCGATCTGCAGGCGCCGCATCGCGGCGAGCGCTG GTGGCGCGCCGTGGCCGACGCGCCGGCGAAGCCCGCGCGCTGGCGCGGCTGGCGCGGCGGCCGCGAGGACGCGTCCGGGG TGTGA
Upstream 100 bases:
>100_bases GGGAGCGTGGGAATCCATCGGCAAATTTTATACCGGACGGTTTACTTTTCTCGAAAATAAACTACACTGGAGAGTCTACT TTTTGCGCCGGACCGATTCG
Downstream 100 bases:
>100_bases GGCCGCCCGCTGCCTGGGCCGGCTGCGCCGGGCGGTGCGCTGGGCCGATGCGTGCGCGGCATCCGCGATCCGCCGCCGCG CTCGCGAGCCGTGACGGCGG
Product: zinc-dependent hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MTSVTRRLGRLLGMAAARRSRAWAAASPQHDGERFRNLRPRPAEGAGKRLSIAWNVLFKKPGGTAPAAALPVDALTRAGL EAAPDRSLFRLGHSTLLLKLRGRFWLTDPVFAERASPLRRFGPKRFHAPPVALADLPPLAGVILSHDHYDHLDRDTVLAL AAGTGVFLTPLGVGDRLIEWGIDAAKVRQFDWWQGTELHGVAFTATPAQHFSGRSLFDGDRTLWASWTIVEGGLRVFFSG DTGYFDGFREIGERCGPFDVTLLETGAYDAQWPYVHMQPEQTVQAHVDLRGRWLVPVHNGTFDLAMHRWQEPFERVFGLA AARGIALATPRMGERLDLQAPHRGERWWRAVADAPAKPARWRGWRGGREDASGV
Sequences:
>Translated_374_residues MTSVTRRLGRLLGMAAARRSRAWAAASPQHDGERFRNLRPRPAEGAGKRLSIAWNVLFKKPGGTAPAAALPVDALTRAGL EAAPDRSLFRLGHSTLLLKLRGRFWLTDPVFAERASPLRRFGPKRFHAPPVALADLPPLAGVILSHDHYDHLDRDTVLAL AAGTGVFLTPLGVGDRLIEWGIDAAKVRQFDWWQGTELHGVAFTATPAQHFSGRSLFDGDRTLWASWTIVEGGLRVFFSG DTGYFDGFREIGERCGPFDVTLLETGAYDAQWPYVHMQPEQTVQAHVDLRGRWLVPVHNGTFDLAMHRWQEPFERVFGLA AARGIALATPRMGERLDLQAPHRGERWWRAVADAPAKPARWRGWRGGREDASGV >Mature_373_residues TSVTRRLGRLLGMAAARRSRAWAAASPQHDGERFRNLRPRPAEGAGKRLSIAWNVLFKKPGGTAPAAALPVDALTRAGLE AAPDRSLFRLGHSTLLLKLRGRFWLTDPVFAERASPLRRFGPKRFHAPPVALADLPPLAGVILSHDHYDHLDRDTVLALA AGTGVFLTPLGVGDRLIEWGIDAAKVRQFDWWQGTELHGVAFTATPAQHFSGRSLFDGDRTLWASWTIVEGGLRVFFSGD TGYFDGFREIGERCGPFDVTLLETGAYDAQWPYVHMQPEQTVQAHVDLRGRWLVPVHNGTFDLAMHRWQEPFERVFGLAA ARGIALATPRMGERLDLQAPHRGERWWRAVADAPAKPARWRGWRGGREDASGV
Specific function: Unknown
COG id: COG2220
COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To K.pneumoniae romA [H]
Homologues:
Organism=Homo sapiens, GI170932483, Length=230, Percent_Identity=41.304347826087, Blast_Score=192, Evalue=5e-49, Organism=Homo sapiens, GI170932481, Length=230, Percent_Identity=41.304347826087, Blast_Score=192, Evalue=5e-49, Organism=Caenorhabditis elegans, GI17543102, Length=366, Percent_Identity=31.1475409836066, Blast_Score=164, Evalue=9e-41, Organism=Caenorhabditis elegans, GI17543100, Length=282, Percent_Identity=34.3971631205674, Blast_Score=162, Evalue=4e-40, Organism=Caenorhabditis elegans, GI25148824, Length=333, Percent_Identity=31.8318318318318, Blast_Score=161, Evalue=6e-40, Organism=Caenorhabditis elegans, GI17543104, Length=284, Percent_Identity=34.8591549295775, Blast_Score=154, Evalue=6e-38, Organism=Saccharomyces cerevisiae, GI6325154, Length=258, Percent_Identity=31.3953488372093, Blast_Score=111, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41533; Mature: 41402
Theoretical pI: Translated: 10.85; Mature: 10.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSVTRRLGRLLGMAAARRSRAWAAASPQHDGERFRNLRPRPAEGAGKRLSIAWNVLFKK CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEEEEEEC PGGTAPAAALPVDALTRAGLEAAPDRSLFRLGHSTLLLKLRGRFWLTDPVFAERASPLRR CCCCCCCHHCCHHHHHHCCCCCCCCHHHHHHCCCEEEEEECCCEEECCCHHHHHCCHHHH FGPKRFHAPPVALADLPPLAGVILSHDHYDHLDRDTVLALAAGTGVFLTPLGVGDRLIEW CCCCCCCCCCEEHHCCCCHHHHEECCCCCCCCCCCEEEEEEECCCEEEEECCCCHHHHHH GIDAAKVRQFDWWQGTELHGVAFTATPAQHFSGRSLFDGDRTLWASWTIVEGGLRVFFSG CCCHHHHEECCCCCCCEECEEEEEECCHHHCCCCCCCCCCCEEEEEEEEEECCEEEEECC DTGYFDGFREIGERCGPFDVTLLETGAYDAQWPYVHMQPEQTVQAHVDLRGRWLVPVHNG CCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCHHHHEEEEEECCEEEEEEECC TFDLAMHRWQEPFERVFGLAAARGIALATPRMGERLDLQAPHRGERWWRAVADAPAKPAR CHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC WRGWRGGREDASGV CCCCCCCCCCCCCC >Mature Secondary Structure TSVTRRLGRLLGMAAARRSRAWAAASPQHDGERFRNLRPRPAEGAGKRLSIAWNVLFKK CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEEEEEEC PGGTAPAAALPVDALTRAGLEAAPDRSLFRLGHSTLLLKLRGRFWLTDPVFAERASPLRR CCCCCCCHHCCHHHHHHCCCCCCCCHHHHHHCCCEEEEEECCCEEECCCHHHHHCCHHHH FGPKRFHAPPVALADLPPLAGVILSHDHYDHLDRDTVLALAAGTGVFLTPLGVGDRLIEW CCCCCCCCCCEEHHCCCCHHHHEECCCCCCCCCCCEEEEEEECCCEEEEECCCCHHHHHH GIDAAKVRQFDWWQGTELHGVAFTATPAQHFSGRSLFDGDRTLWASWTIVEGGLRVFFSG CCCHHHHEECCCCCCCEECEEEEEECCHHHCCCCCCCCCCCEEEEEEEEEECCEEEEECC DTGYFDGFREIGERCGPFDVTLLETGAYDAQWPYVHMQPEQTVQAHVDLRGRWLVPVHNG CCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCHHHHEEEEEECCEEEEEEECC TFDLAMHRWQEPFERVFGLAAARGIALATPRMGERLDLQAPHRGERWWRAVADAPAKPAR CHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC WRGWRGGREDASGV CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]