| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is yvrE [H]
Identifier: 238024888
GI number: 238024888
Start: 1940210
End: 1941181
Strand: Reverse
Name: yvrE [H]
Synonym: bglu_2g15310
Alternate gene names: 238024888
Gene position: 1941181-1940210 (Counterclockwise)
Preceding gene: 238024891
Following gene: 238024885
Centisome position: 68.66
GC content: 74.49
Gene sequence:
>972_bases ATGACCGATACCACCGTTTCCTCCGATCCGAACCGACCCGCCGGCGCGCCGGCCGCCACGCTGCTGGTCGATGCCCGCCA CGTGCTCGGCGAATGCGCGACCTGGTGCGGGCTCGCCCACGCGTTCTACTGGACCGACATCGAGGGGGCGCGGCTCTGGC GCCACCGCCCCGGCGCGACCCCCCGGACCGAAAGCTGGCCGATGCCCGAGCGGCTCGGCTGCTTCGCGCTGACCGAGGAG CGCGACGTGCTGCTGGTGGGGCTCGCCTCGCACCTGGCGCTGTTCGACCTGCGCGACGGCCGCTTCGAGCGCATCGTCGA GGTCGAGCCGGGGCAGCGCTCGCGCGTGAACGACGGGCGCTGCGACCGCGCCGGCAATCTGGTGTTCGGCATGAAGGACG AGCACGATCCGCTGCAGGCCACGACCGGCTTCTACCGGCTCAACGCGGACCGTTCGCTCGAACGGCTCGCGCTGCCGCCC GCGGCGATCGCCAACAGCATCGCGTTCTCGCCCGACGGCGCGCGCATGTACTTCTGCGATACGCTCACGCGACAGATCAT GGTGTGCGACTACCGCCCCGACGGCCCGGTGGCGAAGGTGCGGCCCTTCGTGGCCCTGGCCGACGCGACGGGCGGCCCGG ACGGCTCGACCGTCGATGCCGAGGGCGGCCTCTGGAACGCGCAGTGGGGCGGCGCGCGCGTGGTGCGCTACGACCCGAAC GGCGTGGAGACGGATCGCATCGCGATCCCCACCACGCAGCCGAGCTGCCCGTCGTTCGGCCCGGCGCCCGAGCGCGCCGG CGAGCCGGCCGACGGCGCCGAGGGCTGGCGCACGCTCTACGTGACGAGCGCGCGCGAGGGCCTCGACGGTGACGCGCTCG CCGCCGATCCGCACGCGGGCGGCGTGTTCGTCGCGGCCACCGCCTATCGCGGGCTGCCGGAGCCGCGCTTCCCGCTGCGC GGCGCGCGCTGA
Upstream 100 bases:
>100_bases CGCGTTTTGCGTTTCGCGGCGCGAGCGTGTATCAGAGCGGAACGGCGGCCGTCGCGGCGATGCGGCGGCCGGCCACGAAC CGTCACCCGACCGACTACCG
Downstream 100 bases:
>100_bases GTACGGGCGGGCGCCCCGCGGGCTACGGGCGGCGCCGCGCCGCCGCGAGCCGCCCGCGCAGCAGCGGCAGCGCCACCTCG CTCCAGAACGGCGGCGAGAC
Product: SMP-30/gluconolaconase/LRE domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MTDTTVSSDPNRPAGAPAATLLVDARHVLGECATWCGLAHAFYWTDIEGARLWRHRPGATPRTESWPMPERLGCFALTEE RDVLLVGLASHLALFDLRDGRFERIVEVEPGQRSRVNDGRCDRAGNLVFGMKDEHDPLQATTGFYRLNADRSLERLALPP AAIANSIAFSPDGARMYFCDTLTRQIMVCDYRPDGPVAKVRPFVALADATGGPDGSTVDAEGGLWNAQWGGARVVRYDPN GVETDRIAIPTTQPSCPSFGPAPERAGEPADGAEGWRTLYVTSAREGLDGDALAADPHAGGVFVAATAYRGLPEPRFPLR GAR
Sequences:
>Translated_323_residues MTDTTVSSDPNRPAGAPAATLLVDARHVLGECATWCGLAHAFYWTDIEGARLWRHRPGATPRTESWPMPERLGCFALTEE RDVLLVGLASHLALFDLRDGRFERIVEVEPGQRSRVNDGRCDRAGNLVFGMKDEHDPLQATTGFYRLNADRSLERLALPP AAIANSIAFSPDGARMYFCDTLTRQIMVCDYRPDGPVAKVRPFVALADATGGPDGSTVDAEGGLWNAQWGGARVVRYDPN GVETDRIAIPTTQPSCPSFGPAPERAGEPADGAEGWRTLYVTSAREGLDGDALAADPHAGGVFVAATAYRGLPEPRFPLR GAR >Mature_322_residues TDTTVSSDPNRPAGAPAATLLVDARHVLGECATWCGLAHAFYWTDIEGARLWRHRPGATPRTESWPMPERLGCFALTEER DVLLVGLASHLALFDLRDGRFERIVEVEPGQRSRVNDGRCDRAGNLVFGMKDEHDPLQATTGFYRLNADRSLERLALPPA AIANSIAFSPDGARMYFCDTLTRQIMVCDYRPDGPVAKVRPFVALADATGGPDGSTVDAEGGLWNAQWGGARVVRYDPNG VETDRIAIPTTQPSCPSFGPAPERAGEPADGAEGWRTLYVTSAREGLDGDALAADPHAGGVFVAATAYRGLPEPRFPLRG AR
Specific function: Unknown
COG id: COG3386
COG function: function code G; Gluconolactonase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SMP-30/CGR1 family [H]
Homologues:
Organism=Homo sapiens, GI23111021, Length=198, Percent_Identity=30.8080808080808, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI4759036, Length=198, Percent_Identity=30.8080808080808, Blast_Score=87, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR013658 - InterPro: IPR005511 [H]
Pfam domain/function: PF08450 SGL [H]
EC number: NA
Molecular weight: Translated: 34885; Mature: 34754
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTTVSSDPNRPAGAPAATLLVDARHVLGECATWCGLAHAFYWTDIEGARLWRHRPGAT CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHCCCCCC PRTESWPMPERLGCFALTEERDVLLVGLASHLALFDLRDGRFERIVEVEPGQRSRVNDGR CCCCCCCCHHHCCEEEECCCCCEEEEEHHHHEEEEECCCCCEEEEEEECCCCCCCCCCCC CDRAGNLVFGMKDEHDPLQATTGFYRLNADRSLERLALPPAAIANSIAFSPDGARMYFCD CCCCCCEEEECCCCCCCCHHCCCEEEECCCCCHHHHCCCHHHHHHCEEECCCCCEEEEEE TLTRQIMVCDYRPDGPVAKVRPFVALADATGGPDGSTVDAEGGLWNAQWGGARVVRYDPN CCCCEEEEEECCCCCCHHHHCCEEEEECCCCCCCCCEEECCCCEEECCCCCEEEEEECCC GVETDRIAIPTTQPSCPSFGPAPERAGEPADGAEGWRTLYVTSAREGLDGDALAADPHAG CCCCCEEEECCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCCCCCEECCCCCC GVFVAATAYRGLPEPRFPLRGAR CEEEEEEHHCCCCCCCCCCCCCC >Mature Secondary Structure TDTTVSSDPNRPAGAPAATLLVDARHVLGECATWCGLAHAFYWTDIEGARLWRHRPGAT CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHCCCCCC PRTESWPMPERLGCFALTEERDVLLVGLASHLALFDLRDGRFERIVEVEPGQRSRVNDGR CCCCCCCCHHHCCEEEECCCCCEEEEEHHHHEEEEECCCCCEEEEEEECCCCCCCCCCCC CDRAGNLVFGMKDEHDPLQATTGFYRLNADRSLERLALPPAAIANSIAFSPDGARMYFCD CCCCCCEEEECCCCCCCCHHCCCEEEECCCCCHHHHCCCHHHHHHCEEECCCCCEEEEEE TLTRQIMVCDYRPDGPVAKVRPFVALADATGGPDGSTVDAEGGLWNAQWGGARVVRYDPN CCCCEEEEEECCCCCCHHHHCCEEEEECCCCCCCCCEEECCCCEEECCCCCEEEEEECCC GVETDRIAIPTTQPSCPSFGPAPERAGEPADGAEGWRTLYVTSAREGLDGDALAADPHAG CCCCCEEEECCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCCCCCEECCCCCC GVFVAATAYRGLPEPRFPLRGAR CEEEEEEHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9639930; 9384377 [H]