| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024875
Identifier: 238024875
GI number: 238024875
Start: 1919445
End: 1920668
Strand: Reverse
Name: 238024875
Synonym: bglu_2g15160
Alternate gene names: NA
Gene position: 1920668-1919445 (Counterclockwise)
Preceding gene: 238024876
Following gene: 238024874
Centisome position: 67.93
GC content: 69.2
Gene sequence:
>1224_bases ATGACGACTGCTTCCACGCTGCCCGCCGCCGCGTTCACGATGCCCGGCCGCCTGCACGCGGCCGCCGGCGACGCCGCGCG CACCGACGCCTACCTGCCCGCCGCGACGGTGCAATGCCATGCGGCCAACCTGCTCGCGCTCGCCAACGGCGACCTGCTGT GCGCGTGGTTCGGCGGTACCCAGGAAGGCGTGCCCGATATCTCGATCTACTGCTCGCGCCTCGAAAAAGGCGGCGCAAGC TGGAGCGAACCCGTGCGCCTGTCGGACGACACCACGCGCTCCGAGCAGAACCCCGTGCTGTTCGCCGCGCCCGACGGCGA CCTCTGGCTCCTCTACACGGCGCAGCTGTCCGGCCACCAGAACACCTCCATCGTGCGGCGGCGCATTTCGAAGGATCAGG GCCGCACATGGGGGGCCATCGACACGCTGTTCGACAAGCCGGGCACCTTCGTGCGCCAGCCCATCGTGGTGGCGCGCGAC GGTGCGTGGCTGTGCCCGGTGTTCCTGTGCCGCGTGCAGCCGGGGGAGCGCTGGTCGGGCAATGACGACGTGAGCGTGGT GATGCGCTCGACCGACGGCGGCGCGACCTGGAGCGAACACGCCGTGCCCGACAGCGTGGGCTGCGTGCACATGAACATCC AGATGCTCGCTGACGGCACGCTGCTCGCGCTTTATCGCAGCCGCTGGGCCGACCATATCTACGCGAGCCGTTCGCGCGAC GGCCTCGCATGGAGCGCGCCCGAAGCGCTGGACTTGCCGAACAACAATTCGTCGATCCAGTTCGTCACGCTCGCGAACGG CCATCTCGGCCTCGTGTTCAACGCGAGCAGCGCCGCACAAAGCACGGCGCGCCGTGCCTCGCTCTACGACGACATCGAAG ATTCCGAAGACAGCGGCGAGCTCGTCGCGCAGGCGGCCTCCGCGCGCGGCACGGCGTTCTGGGGCGCGCCGCGCGCACCG ATGACGCTCGCCATTTCGCTCGACGGCGGCCGCACCTGGCCGGTGCGGCGCAACCTCGAAACCGGCGACGGCTATTGCAT GACCAACAACTCCGTGGACAAGCTCAACCGTGAGTTCTCGTATCCGTCGATCGCGCAGTCGCCGGACGGCCGCCTGCATA TTGCCTACACGTACTTCCGCCAGCGCATCAAGTACGTGAGCGTGACCGAAGACTGGGCGAGCGCGGCGAAGCAGGACGCC GACGCGGCGCCCGCCCGCGCGTGA
Upstream 100 bases:
>100_bases ACGGCGCGCGACCACGGCCGGCGCATCGCGCATACGGACTCGTAGGCGCCCTGTCTTGCGCCCGGTACCGCGCCCCCGAC ACGCAACCAAGGAATTCATC
Downstream 100 bases:
>100_bases GACGCCGATAGACCCCCGCGAGATGGGCGACAGGCGACGGAAAATAATGGATACACTACGTGCGCGCCGGATCGTCCGCG CCGCTTGCCTCGCTGCGGGG
Product: BNR repeat-containing glycosyl hydrolase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MTTASTLPAAAFTMPGRLHAAAGDAARTDAYLPAATVQCHAANLLALANGDLLCAWFGGTQEGVPDISIYCSRLEKGGAS WSEPVRLSDDTTRSEQNPVLFAAPDGDLWLLYTAQLSGHQNTSIVRRRISKDQGRTWGAIDTLFDKPGTFVRQPIVVARD GAWLCPVFLCRVQPGERWSGNDDVSVVMRSTDGGATWSEHAVPDSVGCVHMNIQMLADGTLLALYRSRWADHIYASRSRD GLAWSAPEALDLPNNNSSIQFVTLANGHLGLVFNASSAAQSTARRASLYDDIEDSEDSGELVAQAASARGTAFWGAPRAP MTLAISLDGGRTWPVRRNLETGDGYCMTNNSVDKLNREFSYPSIAQSPDGRLHIAYTYFRQRIKYVSVTEDWASAAKQDA DAAPARA
Sequences:
>Translated_407_residues MTTASTLPAAAFTMPGRLHAAAGDAARTDAYLPAATVQCHAANLLALANGDLLCAWFGGTQEGVPDISIYCSRLEKGGAS WSEPVRLSDDTTRSEQNPVLFAAPDGDLWLLYTAQLSGHQNTSIVRRRISKDQGRTWGAIDTLFDKPGTFVRQPIVVARD GAWLCPVFLCRVQPGERWSGNDDVSVVMRSTDGGATWSEHAVPDSVGCVHMNIQMLADGTLLALYRSRWADHIYASRSRD GLAWSAPEALDLPNNNSSIQFVTLANGHLGLVFNASSAAQSTARRASLYDDIEDSEDSGELVAQAASARGTAFWGAPRAP MTLAISLDGGRTWPVRRNLETGDGYCMTNNSVDKLNREFSYPSIAQSPDGRLHIAYTYFRQRIKYVSVTEDWASAAKQDA DAAPARA >Mature_406_residues TTASTLPAAAFTMPGRLHAAAGDAARTDAYLPAATVQCHAANLLALANGDLLCAWFGGTQEGVPDISIYCSRLEKGGASW SEPVRLSDDTTRSEQNPVLFAAPDGDLWLLYTAQLSGHQNTSIVRRRISKDQGRTWGAIDTLFDKPGTFVRQPIVVARDG AWLCPVFLCRVQPGERWSGNDDVSVVMRSTDGGATWSEHAVPDSVGCVHMNIQMLADGTLLALYRSRWADHIYASRSRDG LAWSAPEALDLPNNNSSIQFVTLANGHLGLVFNASSAAQSTARRASLYDDIEDSEDSGELVAQAASARGTAFWGAPRAPM TLAISLDGGRTWPVRRNLETGDGYCMTNNSVDKLNREFSYPSIAQSPDGRLHIAYTYFRQRIKYVSVTEDWASAAKQDAD AAPARA
Specific function: Unknown
COG id: COG4692
COG function: function code G; Predicted neuraminidase (sialidase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44002; Mature: 43871
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTASTLPAAAFTMPGRLHAAAGDAARTDAYLPAATVQCHAANLLALANGDLLCAWFGGT CCCCCCCCCHHCCCCCEEEECCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCC QEGVPDISIYCSRLEKGGASWSEPVRLSDDTTRSEQNPVLFAAPDGDLWLLYTAQLSGHQ CCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCEEEECCCCCEEEEEEEEECCCC NTSIVRRRISKDQGRTWGAIDTLFDKPGTFVRQPIVVARDGAWLCPVFLCRVQPGERWSG CHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHCCEEEEECCCEEEEEEEEECCCCCCCCC NDDVSVVMRSTDGGATWSEHAVPDSVGCVHMNIQMLADGTLLALYRSRWADHIYASRSRD CCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCHHEEHHHHHHHHHHHHCCCCC GLAWSAPEALDLPNNNSSIQFVTLANGHLGLVFNASSAAQSTARRASLYDDIEDSEDSGE CCEECCCCCEECCCCCCCEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCHH LVAQAASARGTAFWGAPRAPMTLAISLDGGRTWPVRRNLETGDGYCMTNNSVDKLNREFS HHHHHHCCCCCEEECCCCCCEEEEEEECCCCCCCEECCCCCCCCEEEECCCHHHHHHHCC YPSIAQSPDGRLHIAYTYFRQRIKYVSVTEDWASAAKQDADAAPARA CCCCCCCCCCCEEEEEHHHHHHEEEEEEEHHHHHHHHCCCCCCCCCC >Mature Secondary Structure TTASTLPAAAFTMPGRLHAAAGDAARTDAYLPAATVQCHAANLLALANGDLLCAWFGGT CCCCCCCCHHCCCCCEEEECCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCC QEGVPDISIYCSRLEKGGASWSEPVRLSDDTTRSEQNPVLFAAPDGDLWLLYTAQLSGHQ CCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCEEEECCCCCEEEEEEEEECCCC NTSIVRRRISKDQGRTWGAIDTLFDKPGTFVRQPIVVARDGAWLCPVFLCRVQPGERWSG CHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHCCEEEEECCCEEEEEEEEECCCCCCCCC NDDVSVVMRSTDGGATWSEHAVPDSVGCVHMNIQMLADGTLLALYRSRWADHIYASRSRD CCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCHHEEHHHHHHHHHHHHCCCCC GLAWSAPEALDLPNNNSSIQFVTLANGHLGLVFNASSAAQSTARRASLYDDIEDSEDSGE CCEECCCCCEECCCCCCCEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCHH LVAQAASARGTAFWGAPRAPMTLAISLDGGRTWPVRRNLETGDGYCMTNNSVDKLNREFS HHHHHHCCCCCEEECCCCCCEEEEEEECCCCCCCEECCCCCCCCEEEECCCHHHHHHHCC YPSIAQSPDGRLHIAYTYFRQRIKYVSVTEDWASAAKQDADAAPARA CCCCCCCCCCCEEEEEHHHHHHEEEEEEEHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA