| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is fct [H]
Identifier: 238024859
GI number: 238024859
Start: 1902347
End: 1904464
Strand: Direct
Name: fct [H]
Synonym: bglu_2g14990
Alternate gene names: 238024859
Gene position: 1902347-1904464 (Clockwise)
Preceding gene: 238024854
Following gene: 238024863
Centisome position: 67.28
GC content: 70.25
Gene sequence:
>2118_bases ATGAAGCCTCGCTCGCTTTCCGCCCTCACCGCCGCGCTCGGCGCGCTGTCCAACCCCGCTCAGGCCCAGGCCGACGCCGC GCCGCCCGACCTCGCGCTGCCCGCGCTGCAGGTCAAGGCCGCGCGCCCCGGCGCACTGGACCGCGTGCAGGACACCGGCA GCCACCTCGGCCTCACGCCGCGCCAAACCCCGGCCAGCGTCGAGCAGCTCAGCCGCGCCGCGCTGACCGAACGCGGCGAC GCATCGATCGTCGATGCCGTCAGCCGCGCCACCGGCATCGCCGCGTCCCCGCATCCGGGCAACGGCAATTCGGAACTGTC GGCGCGCGGCTTCGTGGGCGCCTCGTCGGTCACCCAGCTGTTCGACGGCGTGCGCCCCTACGGCGCGATCGGGGTCACCT ATCCGTTCGATACCGGGGCCGTCGATCACATCGACGTGCTGCGCGGCCCCGCCTCGGTGATCTACGGCGAAGGCGCGATC GGCGGCGTGGTGAACGTGGTGCCCAAGAAACCCGCGCGCGGGCCGGTCGAGAACGAGCTGCAGCTCGGCATCGGCACCGA GCGGACGGCGCGCGCCGCGTTCGGCAGCGGCGGCGCGATCGACGACAGGCTGTCCTACCGCTTCGATGCGAGCGGCAATC GCTCGGCGAACTGGGTCGACGCGGGCCATTCGCGCAACCTGTCGGTGTCGGGCGCGCTGCGCTACGACGTGCGCCCCGAC CTGTCGATCACCGCCTCGTATGCGCAGGGCTTTCAGCATCCGATGCGCTATTTCGGCGTGCCGCTCGACAACGGCGTGCT CGATCCGGCGCTGCTGAAAAAGAACTACAACGTCGGCGACAGCCTGATCTCGTTTCGCGACAGCTGGGCCACGCTCGCCG CGAGCTGGCAGCCGAGCGACCAGCTGCGCGTGACCAGCACGCTCTACCGGATGAAAAGCCACCGCCACTGGAAGGACGCC GAGAACTACGCGTTCGTGCCGGCCACCGGCCAGATCGCGCGCAGCGGCTACACCGAGATCCTGCACGATCAGCAGCAGTT CGGCGAGGTCACGACGGCCACCGTCGAGAGCCTCGTGCTGGGCCGCCGCAACACGTTCTCGGCCGGCTTCGAGTTCAACC ACACCAGCTTCCGCCACGACAACAACTCGCCGTACTCGGGCAGCTCGCTGGTCGATCCCGATGCGTTCGACCCGGGCAGC TTCATCAACATCGCCGGCACGCGGCCGAAGTACGATTCGCAGGCCAACCAGTACGCCCTGTTCGCCGAGGACCGCCTCGC GCTCACGCAGCGCTGGTCGGTGGTGGGCGGCCTGCGCTACGACCACGCCAGCGTGAACCGCGACGACCTCGTGGCCGGCG GCGGCTTCGGGCGCGTCTACGCGAACACCGGCTGGCGCCTTGGCACCGTCTACGACATCACGCCGGCCGTCACCGTCTAC GGCCAGTATTCGGCGGCGGCCGACCCGGTCGGCTCGCTGCTGATGCTCAATGCGTCGAGCGCCAACTTCCGCCTCGCCAC CGGCCGCCAGATCGAGGTCGGCCTCAAGCAGTCGCTGCTCGGCGGCCGCGCCGAGTGGACGCTTGCCGCCTACCGGATCG TCAAGGACAACCTGGTGGCCGCCGATCCGCAGCACCCGAACCAATCGATCCAGATCGGCCGGCAGTCGTCACGCGGCATC GAGGCGAGCGTCGGCGCGCAGCTCGCGCGCGACTGGCGCATCGACGCGAACGTCGCCGCGCTGCGCGCGAAGTACGACGA TTTCACCGAGGCCAGCGGCAGCGGGCTCGTCTCGCGCGACGGCAACGTGCCGGCCTCGGTGCCGCAGCGGCTCGCGAACC TGTGGGTGAGCTGGCGCTTCGCCTCGCGGTGGACCGGCATCGGCGGGCTGCGCTACGTGGGCAGGCGCTATGCCGACGCG GCGAACCAGCTGTCGATGGCGTCCTACACCACCGTCGATCTGGCGCTCGCCTGGACGCCGCGCAAGGACACCACCATCAC GGCGCGCGCCCGCAACGTGTTGAACCGCCATTACGTGGAGAGCGCCTACTACAACGAGACGCAATACCTGATCGGCAGCG ACCGGCGCTTCGAGCTGCTGCTCGCCTGCCGGTTCTGA
Upstream 100 bases:
>100_bases CGCGCCCGGGTCGGGCCGCCCGCCGTCCCATGCCACGCAGCCCCGCGCCGGGCCTGCGTGCTGTCTCGTTCCGCTCTCGA CTCGCCTCATCACTGCTGCC
Downstream 100 bases:
>100_bases GGTGCCGGCCCGGGGCATGGCTCAGAACGAATGCGTGATGCCGACGCGCGCGACGACCTGGTGCCCGTTCGAGGACGCGC CAGCCGAACCGAGCACGTAG
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 705; Mature: 705
Protein sequence:
>705_residues MKPRSLSALTAALGALSNPAQAQADAAPPDLALPALQVKAARPGALDRVQDTGSHLGLTPRQTPASVEQLSRAALTERGD ASIVDAVSRATGIAASPHPGNGNSELSARGFVGASSVTQLFDGVRPYGAIGVTYPFDTGAVDHIDVLRGPASVIYGEGAI GGVVNVVPKKPARGPVENELQLGIGTERTARAAFGSGGAIDDRLSYRFDASGNRSANWVDAGHSRNLSVSGALRYDVRPD LSITASYAQGFQHPMRYFGVPLDNGVLDPALLKKNYNVGDSLISFRDSWATLAASWQPSDQLRVTSTLYRMKSHRHWKDA ENYAFVPATGQIARSGYTEILHDQQQFGEVTTATVESLVLGRRNTFSAGFEFNHTSFRHDNNSPYSGSSLVDPDAFDPGS FINIAGTRPKYDSQANQYALFAEDRLALTQRWSVVGGLRYDHASVNRDDLVAGGGFGRVYANTGWRLGTVYDITPAVTVY GQYSAAADPVGSLLMLNASSANFRLATGRQIEVGLKQSLLGGRAEWTLAAYRIVKDNLVAADPQHPNQSIQIGRQSSRGI EASVGAQLARDWRIDANVAALRAKYDDFTEASGSGLVSRDGNVPASVPQRLANLWVSWRFASRWTGIGGLRYVGRRYADA ANQLSMASYTTVDLALAWTPRKDTTITARARNVLNRHYVESAYYNETQYLIGSDRRFELLLACRF
Sequences:
>Translated_705_residues MKPRSLSALTAALGALSNPAQAQADAAPPDLALPALQVKAARPGALDRVQDTGSHLGLTPRQTPASVEQLSRAALTERGD ASIVDAVSRATGIAASPHPGNGNSELSARGFVGASSVTQLFDGVRPYGAIGVTYPFDTGAVDHIDVLRGPASVIYGEGAI GGVVNVVPKKPARGPVENELQLGIGTERTARAAFGSGGAIDDRLSYRFDASGNRSANWVDAGHSRNLSVSGALRYDVRPD LSITASYAQGFQHPMRYFGVPLDNGVLDPALLKKNYNVGDSLISFRDSWATLAASWQPSDQLRVTSTLYRMKSHRHWKDA ENYAFVPATGQIARSGYTEILHDQQQFGEVTTATVESLVLGRRNTFSAGFEFNHTSFRHDNNSPYSGSSLVDPDAFDPGS FINIAGTRPKYDSQANQYALFAEDRLALTQRWSVVGGLRYDHASVNRDDLVAGGGFGRVYANTGWRLGTVYDITPAVTVY GQYSAAADPVGSLLMLNASSANFRLATGRQIEVGLKQSLLGGRAEWTLAAYRIVKDNLVAADPQHPNQSIQIGRQSSRGI EASVGAQLARDWRIDANVAALRAKYDDFTEASGSGLVSRDGNVPASVPQRLANLWVSWRFASRWTGIGGLRYVGRRYADA ANQLSMASYTTVDLALAWTPRKDTTITARARNVLNRHYVESAYYNETQYLIGSDRRFELLLACRF >Mature_705_residues MKPRSLSALTAALGALSNPAQAQADAAPPDLALPALQVKAARPGALDRVQDTGSHLGLTPRQTPASVEQLSRAALTERGD ASIVDAVSRATGIAASPHPGNGNSELSARGFVGASSVTQLFDGVRPYGAIGVTYPFDTGAVDHIDVLRGPASVIYGEGAI GGVVNVVPKKPARGPVENELQLGIGTERTARAAFGSGGAIDDRLSYRFDASGNRSANWVDAGHSRNLSVSGALRYDVRPD LSITASYAQGFQHPMRYFGVPLDNGVLDPALLKKNYNVGDSLISFRDSWATLAASWQPSDQLRVTSTLYRMKSHRHWKDA ENYAFVPATGQIARSGYTEILHDQQQFGEVTTATVESLVLGRRNTFSAGFEFNHTSFRHDNNSPYSGSSLVDPDAFDPGS FINIAGTRPKYDSQANQYALFAEDRLALTQRWSVVGGLRYDHASVNRDDLVAGGGFGRVYANTGWRLGTVYDITPAVTVY GQYSAAADPVGSLLMLNASSANFRLATGRQIEVGLKQSLLGGRAEWTLAAYRIVKDNLVAADPQHPNQSIQIGRQSSRGI EASVGAQLARDWRIDANVAALRAKYDDFTEASGSGLVSRDGNVPASVPQRLANLWVSWRFASRWTGIGGLRYVGRRYADA ANQLSMASYTTVDLALAWTPRKDTTITARARNVLNRHYVESAYYNETQYLIGSDRRFELLLACRF
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=302, Percent_Identity=27.4834437086093, Blast_Score=91, Evalue=3e-19, Organism=Escherichia coli, GI1787024, Length=328, Percent_Identity=21.6463414634146, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1787344, Length=712, Percent_Identity=19.3820224719101, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 76040; Mature: 76040
Theoretical pI: Translated: 9.31; Mature: 9.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPRSLSALTAALGALSNPAQAQADAAPPDLALPALQVKAARPGALDRVQDTGSHLGLTP CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHCCCCCCCCC RQTPASVEQLSRAALTERGDASIVDAVSRATGIAASPHPGNGNSELSARGFVGASSVTQL CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH FDGVRPYGAIGVTYPFDTGAVDHIDVLRGPASVIYGEGAIGGVVNVVPKKPARGPVENEL HHCCCCCCEEEEECCCCCCCCCHHHHHCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCE QLGIGTERTARAAFGSGGAIDDRLSYRFDASGNRSANWVDAGHSRNLSVSGALRYDVRPD EECCCCCHHHHHHCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCEEECEEEEECCCCC LSITASYAQGFQHPMRYFGVPLDNGVLDPALLKKNYNVGDSLISFRDSWATLAASWQPSD CEEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHCHHHEEECCCCCC QLRVTSTLYRMKSHRHWKDAENYAFVPATGQIARSGYTEILHDQQQFGEVTTATVESLVL CCHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHCCHHHHHHCHHHHCCHHHHHHHHHHH GRRNTFSAGFEFNHTSFRHDNNSPYSGSSLVDPDAFDPGSFINIAGTRPKYDSQANQYAL CCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEE FAEDRLALTQRWSVVGGLRYDHASVNRDDLVAGGGFGRVYANTGWRLGTVYDITPAVTVY EECCHHHHHHHHHHHCCCEECCCCCCCCCEEECCCCCEEEECCCEEEEEEEECCCEEEEE GQYSAAADPVGSLLMLNASSANFRLATGRQIEVGLKQSLLGGRAEWTLAAYRIVKDNLVA ECCCCCCCCCCEEEEEECCCCCEEEECCCEEEECHHHHHCCCCCCEEHHHHHHHHCCEEE ADPQHPNQSIQIGRQSSRGIEASVGAQLARDWRIDANVAALRAKYDDFTEASGSGLVSRD CCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCHHEEECCCCCHHCCCCCCEEECC GNVPASVPQRLANLWVSWRFASRWTGIGGLRYVGRRYADAANQLSMASYTTVDLALAWTP CCCCHHHHHHHHHHEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEEEEEECC RKDTTITARARNVLNRHYVESAYYNETQYLIGSDRRFELLLACRF CCCCEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECC >Mature Secondary Structure MKPRSLSALTAALGALSNPAQAQADAAPPDLALPALQVKAARPGALDRVQDTGSHLGLTP CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHCCCCCCCCC RQTPASVEQLSRAALTERGDASIVDAVSRATGIAASPHPGNGNSELSARGFVGASSVTQL CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH FDGVRPYGAIGVTYPFDTGAVDHIDVLRGPASVIYGEGAIGGVVNVVPKKPARGPVENEL HHCCCCCCEEEEECCCCCCCCCHHHHHCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCE QLGIGTERTARAAFGSGGAIDDRLSYRFDASGNRSANWVDAGHSRNLSVSGALRYDVRPD EECCCCCHHHHHHCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCEEECEEEEECCCCC LSITASYAQGFQHPMRYFGVPLDNGVLDPALLKKNYNVGDSLISFRDSWATLAASWQPSD CEEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHCHHHEEECCCCCC QLRVTSTLYRMKSHRHWKDAENYAFVPATGQIARSGYTEILHDQQQFGEVTTATVESLVL CCHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHCCHHHHHHCHHHHCCHHHHHHHHHHH GRRNTFSAGFEFNHTSFRHDNNSPYSGSSLVDPDAFDPGSFINIAGTRPKYDSQANQYAL CCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEE FAEDRLALTQRWSVVGGLRYDHASVNRDDLVAGGGFGRVYANTGWRLGTVYDITPAVTVY EECCHHHHHHHHHHHCCCEECCCCCCCCCEEECCCCCEEEECCCEEEEEEEECCCEEEEE GQYSAAADPVGSLLMLNASSANFRLATGRQIEVGLKQSLLGGRAEWTLAAYRIVKDNLVA ECCCCCCCCCCEEEEEECCCCCEEEECCCEEEECHHHHHCCCCCCEEHHHHHHHHCCEEE ADPQHPNQSIQIGRQSSRGIEASVGAQLARDWRIDANVAALRAKYDDFTEASGSGLVSRD CCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCHHEEECCCCCHHCCCCCCEEECC GNVPASVPQRLANLWVSWRFASRWTGIGGLRYVGRRYADAANQLSMASYTTVDLALAWTP CCCCHHHHHHHHHHEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHCEEEEEEEEEEECC RKDTTITARARNVLNRHYVESAYYNETQYLIGSDRRFELLLACRF CCCCEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]