| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is penA [H]
Identifier: 238024831
GI number: 238024831
Start: 1869310
End: 1871211
Strand: Direct
Name: penA [H]
Synonym: bglu_2g14710
Alternate gene names: 238024831
Gene position: 1869310-1871211 (Clockwise)
Preceding gene: 238024830
Following gene: 238024841
Centisome position: 66.12
GC content: 70.14
Gene sequence:
>1902_bases ATGCCGCACCGAAACAAGCCGAAATCCGCCGATCCTTACGTCGCCGTCGCGCGCAGCCCGATGCTCGGGTCGAGCCTGCC GATGTGGCGTTCGAAATTCGTCGTGATCGTCATGTTTCTCGCGTTCGCCGCGCTGATCGGGCGCGCGTTCTGGGTGCAGG TCGCCAATCAGGATTTCTATCTCGGACAGGGCGAGAAACGCTATCAGCGCACCATCGAACTGGACGCGACGCGCGGGCGC ATCGTCGATCGCAACGGCGCGATGCTGGCCGTGAGCCTCGCCACCTACGAAATCTGGGCCAATCCGAAGCAGGTCGATCC GGCCGCCTACGGCCCGCTCGCGAAGCTGCTCGACATGCCGCACGCCGAACTCGCGCGGCGCCTGACGGCAGACAAGAGCT TCGTGCTGCTGAAGCGGCAGATCGATCCCGACACTGCCGCGAAGATCGGCAAGCTCGACCTCGAAGGCATCACGCAGATC GCCGATTCGAAGCGCTTCTATCCCGAAGGCGAATCGGCCGCGCACGTGGTGGGCTTCACCAACATCGAGGACCGCGGCCA GGAAGGCGTCGAGCTGGCCGCCGACGGCCGGCTGCTCGGCACCGCCGGGCAGCGCGAGGTGATCCGCGACCGGCTCGGCC GCATCATCTCCGACACGCGCCCGCTGGTGCCCGCGCAGCACGGCGCCACCGTCGAGCTGACGATCGACCGCCGCGTGCAG CAGCTCGCCTACGCGCAACTGAAGGCCGCCGTGCTGGCCAACCATGCGAAGGCGGGCAGCGTGGTGGTGCTCGAGGCGCG CTCGGGCGAGATCCTCGCGCTCGCCAATTACCCGACCTTCGACCCGAACGACCGCAGCCGCCTGACCGGCGCGCAATTGC GCAACCGCGCCGTGATCGACACGTTCGAGCCCGGCTCGACCGTCAAGCCGCTCGTCGTGGCGCTGTCGATCGACGAGGGC AAGGTCGGGCCGCAGACGCTCGTCAACACCTCGCCCGGCACCTGGAAGATCGGGCCGGCGGTGATCCACGACACCTCGAA CCACGGCGTGATGACGGTCGCGCAGGCGCTGCAGAAGTCGAGCAACGTCGCGCTCGCGAAGCTGGCGCTGAACCTGCCCG CGCAGACGATCTGGGACAAGTATCAGGAATACGGCATCGGCCACGCGCCGGATCTGACGTTTCCCGGCGTCGCCTCGGGC CGGCTGCGCCCCTACCAGCGCTGGCGGCCGATCGAGCAGGCCACCATGGCTTACGGCTATGGGCTGTCGATGTCGCTGCT GCAGATCGCGCAGATGTACACCGCCTATGCCGGCGACGGCACGCTCCACCCGGTCTCGCTGCTGCGCGACGGCAGCGATG CCGGCCGCCAGGGCCATCGCGTGACACGGCCCGAGACCGCCGCCGCGATCCGCTCGATGCTGGAGATGGCCGTCAGCGAG GGCGGCACCGGGCGCGCGGCGCGCGTGGACGGCTACCGGATCGGCGGCAAGACCGGCACCGCGCGCAAGCAGGAAGGCGG CGGCTACGCCAAGGGCAAGTACCGCGCCCTGTTCGCCGGCATGGCGCCGATGAGCGACCCGCGCGTGATCGTCGCCGTGA TGATCGACGAGCCGGGCGGGCGCGGCTACTACGGCGGCACGGTGGCTGGCCCGGTGTTTTCGTCGGTGATGGGCGGCACG CTGCAGTTGCTGGCGGTGCCGCCCGATGCGCCGGTCAAGCCCGATGCAGTGAAGCCGGCGTCGGCCGCGGCCGCCGGGGT GCCGGCGCAAACGGCCGCGCGCGCCGCCCCGACTGCACCGGCAACCAGGCCGGCACGGCCGCGCGCGATGGTCCAGATGC AGGCCAATGCAAAGCCCAATGCACCGGCCGACGCGGGCAGCCCGAGCGCGGCGCGCTCCTGA
Upstream 100 bases:
>100_bases GCCCTGCGCCGGCACCGGCGCGGGCCAGATTCGCATCGACAATCATTGCAAATCGCCTTAATATTTCTTTCAAATAAACC AGCGCCTTCCCGCCGCCCTC
Downstream 100 bases:
>100_bases CGACGTGACGTGATACCGGCGCGAGCGAGCGCCTCCGGCGGGCGCCGTCCGGCCTGCCGCGTCGGCGCGTCCCGCGGGTA CGCCGCCGGCAGACCGCGCC
Product: Penicillin-binding protein
Products: NA
Alternate protein names: PBP-2 [H]
Number of amino acids: Translated: 633; Mature: 632
Protein sequence:
>633_residues MPHRNKPKSADPYVAVARSPMLGSSLPMWRSKFVVIVMFLAFAALIGRAFWVQVANQDFYLGQGEKRYQRTIELDATRGR IVDRNGAMLAVSLATYEIWANPKQVDPAAYGPLAKLLDMPHAELARRLTADKSFVLLKRQIDPDTAAKIGKLDLEGITQI ADSKRFYPEGESAAHVVGFTNIEDRGQEGVELAADGRLLGTAGQREVIRDRLGRIISDTRPLVPAQHGATVELTIDRRVQ QLAYAQLKAAVLANHAKAGSVVVLEARSGEILALANYPTFDPNDRSRLTGAQLRNRAVIDTFEPGSTVKPLVVALSIDEG KVGPQTLVNTSPGTWKIGPAVIHDTSNHGVMTVAQALQKSSNVALAKLALNLPAQTIWDKYQEYGIGHAPDLTFPGVASG RLRPYQRWRPIEQATMAYGYGLSMSLLQIAQMYTAYAGDGTLHPVSLLRDGSDAGRQGHRVTRPETAAAIRSMLEMAVSE GGTGRAARVDGYRIGGKTGTARKQEGGGYAKGKYRALFAGMAPMSDPRVIVAVMIDEPGGRGYYGGTVAGPVFSSVMGGT LQLLAVPPDAPVKPDAVKPASAAAAGVPAQTAARAAPTAPATRPARPRAMVQMQANAKPNAPADAGSPSAARS
Sequences:
>Translated_633_residues MPHRNKPKSADPYVAVARSPMLGSSLPMWRSKFVVIVMFLAFAALIGRAFWVQVANQDFYLGQGEKRYQRTIELDATRGR IVDRNGAMLAVSLATYEIWANPKQVDPAAYGPLAKLLDMPHAELARRLTADKSFVLLKRQIDPDTAAKIGKLDLEGITQI ADSKRFYPEGESAAHVVGFTNIEDRGQEGVELAADGRLLGTAGQREVIRDRLGRIISDTRPLVPAQHGATVELTIDRRVQ QLAYAQLKAAVLANHAKAGSVVVLEARSGEILALANYPTFDPNDRSRLTGAQLRNRAVIDTFEPGSTVKPLVVALSIDEG KVGPQTLVNTSPGTWKIGPAVIHDTSNHGVMTVAQALQKSSNVALAKLALNLPAQTIWDKYQEYGIGHAPDLTFPGVASG RLRPYQRWRPIEQATMAYGYGLSMSLLQIAQMYTAYAGDGTLHPVSLLRDGSDAGRQGHRVTRPETAAAIRSMLEMAVSE GGTGRAARVDGYRIGGKTGTARKQEGGGYAKGKYRALFAGMAPMSDPRVIVAVMIDEPGGRGYYGGTVAGPVFSSVMGGT LQLLAVPPDAPVKPDAVKPASAAAAGVPAQTAARAAPTAPATRPARPRAMVQMQANAKPNAPADAGSPSAARS >Mature_632_residues PHRNKPKSADPYVAVARSPMLGSSLPMWRSKFVVIVMFLAFAALIGRAFWVQVANQDFYLGQGEKRYQRTIELDATRGRI VDRNGAMLAVSLATYEIWANPKQVDPAAYGPLAKLLDMPHAELARRLTADKSFVLLKRQIDPDTAAKIGKLDLEGITQIA DSKRFYPEGESAAHVVGFTNIEDRGQEGVELAADGRLLGTAGQREVIRDRLGRIISDTRPLVPAQHGATVELTIDRRVQQ LAYAQLKAAVLANHAKAGSVVVLEARSGEILALANYPTFDPNDRSRLTGAQLRNRAVIDTFEPGSTVKPLVVALSIDEGK VGPQTLVNTSPGTWKIGPAVIHDTSNHGVMTVAQALQKSSNVALAKLALNLPAQTIWDKYQEYGIGHAPDLTFPGVASGR LRPYQRWRPIEQATMAYGYGLSMSLLQIAQMYTAYAGDGTLHPVSLLRDGSDAGRQGHRVTRPETAAAIRSMLEMAVSEG GTGRAARVDGYRIGGKTGTARKQEGGGYAKGKYRALFAGMAPMSDPRVIVAVMIDEPGGRGYYGGTVAGPVFSSVMGGTL QLLAVPPDAPVKPDAVKPASAAAAGVPAQTAARAAPTAPATRPARPRAMVQMQANAKPNAPADAGSPSAARS
Specific function: Synthesis of cross-linked peptidoglycan from the lipid intermediates [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=551, Percent_Identity=39.7459165154265, Blast_Score=393, Evalue=1e-110, Organism=Escherichia coli, GI1786854, Length=614, Percent_Identity=24.9185667752443, Blast_Score=124, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005311 - InterPro: IPR001460 [H]
Pfam domain/function: PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 67443; Mature: 67312
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHRNKPKSADPYVAVARSPMLGSSLPMWRSKFVVIVMFLAFAALIGRAFWVQVANQDFY CCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEE LGQGEKRYQRTIELDATRGRIVDRNGAMLAVSLATYEIWANPKQVDPAAYGPLAKLLDMP ECCCHHHHHHEEEEECCCCEEEECCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCC HAELARRLTADKSFVLLKRQIDPDTAAKIGKLDLEGITQIADSKRFYPEGESAAHVVGFT HHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEC NIEDRGQEGVELAADGRLLGTAGQREVIRDRLGRIISDTRPLVPAQHGATVELTIDRRVQ CCHHCCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHH QLAYAQLKAAVLANHAKAGSVVVLEARSGEILALANYPTFDPNDRSRLTGAQLRNRAVID HHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHCCHHHHCCCEEEE TFEPGSTVKPLVVALSIDEGKVGPQTLVNTSPGTWKIGPAVIHDTSNHGVMTVAQALQKS ECCCCCCCCEEEEEEEECCCCCCCHHEEECCCCCEEECCEEEEECCCCCHHHHHHHHHHC SNVALAKLALNLPAQTIWDKYQEYGIGHAPDLTFPGVASGRLRPYQRWRPIEQATMAYGY CCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCC GLSMSLLQIAQMYTAYAGDGTLHPVSLLRDGSDAGRQGHRVTRPETAAAIRSMLEMAVSE CCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC GGTGRAARVDGYRIGGKTGTARKQEGGGYAKGKYRALFAGMAPMSDPRVIVAVMIDEPGG CCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCC RGYYGGTVAGPVFSSVMGGTLQLLAVPPDAPVKPDAVKPASAAAAGVPAQTAARAAPTAP CCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHCCCCHHHHHHCCCCCC ATRPARPRAMVQMQANAKPNAPADAGSPSAARS CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PHRNKPKSADPYVAVARSPMLGSSLPMWRSKFVVIVMFLAFAALIGRAFWVQVANQDFY CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEE LGQGEKRYQRTIELDATRGRIVDRNGAMLAVSLATYEIWANPKQVDPAAYGPLAKLLDMP ECCCHHHHHHEEEEECCCCEEEECCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCC HAELARRLTADKSFVLLKRQIDPDTAAKIGKLDLEGITQIADSKRFYPEGESAAHVVGFT HHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEC NIEDRGQEGVELAADGRLLGTAGQREVIRDRLGRIISDTRPLVPAQHGATVELTIDRRVQ CCHHCCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHH QLAYAQLKAAVLANHAKAGSVVVLEARSGEILALANYPTFDPNDRSRLTGAQLRNRAVID HHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHCCHHHHCCCEEEE TFEPGSTVKPLVVALSIDEGKVGPQTLVNTSPGTWKIGPAVIHDTSNHGVMTVAQALQKS ECCCCCCCCEEEEEEEECCCCCCCHHEEECCCCCEEECCEEEEECCCCCHHHHHHHHHHC SNVALAKLALNLPAQTIWDKYQEYGIGHAPDLTFPGVASGRLRPYQRWRPIEQATMAYGY CCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCC GLSMSLLQIAQMYTAYAGDGTLHPVSLLRDGSDAGRQGHRVTRPETAAAIRSMLEMAVSE CCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC GGTGRAARVDGYRIGGKTGTARKQEGGGYAKGKYRALFAGMAPMSDPRVIVAVMIDEPGG CCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCC RGYYGGTVAGPVFSSVMGGTLQLLAVPPDAPVKPDAVKPASAAAAGVPAQTAARAAPTAP CCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHCCCCHHHHHHCCCCCC ATRPARPRAMVQMQANAKPNAPADAGSPSAARS CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3126399 [H]