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The map label for this gene is ddpC [H]

Identifier: 238024757

GI number: 238024757

Start: 1787931

End: 1788860

Strand: Direct

Name: ddpC [H]

Synonym: bglu_2g13950

Alternate gene names: 238024757

Gene position: 1787931-1788860 (Clockwise)

Preceding gene: 238024756

Following gene: 238024758

Centisome position: 63.24

GC content: 74.19

Gene sequence:

>930_bases
ATGACCCAGCCTCCCGCTTCCCCCGGCGCCACCACGCGGCGCGCGTGGCTGCTGACCGACACGCCCGCCTCGCGCCTGCA
GGCCTCGCTCGGCCTGGCCTACCGCCGCTGGCGCCGCTTCGCGCGCAATCCGCTGAACCTGCTCGGCCTCGCGATCCTCG
CCGTGCTGATCCTGGTGGCGCTGGCCGCGCCGCTGCTGATGCCGCACGACCCGCTCGCGCAGGTGCTCGCCGAGCGCCTG
CTGCCGCCCGGCACGCCCTCGCACTGGCTCGGCACCGACCAGCTCGGCCGCGACATCGGCTCGCGCCTGATCGGCGGCGC
GCGCATCACGCTCGGCATCGCGATCCTGGTGGTGGCGATCGTGGTGCCGCTCGGCGTGCTGATCGGCACCACCGCCGGCT
TCGCGGGCGGCTTCGTCGACAGCGTGCTGATGCGGCTGACCGACATCGCGCTGGCGTTCCCGAAGATCGTGCTGGCACTG
GCCTTCGCGGCCGCGCTCGGCCCAGGGGTGGTGAATGCCGTGGTGGCGATCTCGATCACCGCGTGGCCGGCCTACGCGCG
CCTGGCGCGGGCCGAGACGATCCGCATCGCGCAGGCCGATTTCATCCACGCCGCGCGGCTGCAGGGCGCCTCGGGCTGGC
GCATCCTGCGCCGCTACATCGTGCCGCTCTGCCTGTCGTCGGTGATCGTGCGCGCCACGCTCGACATGGCCGGCATCATC
CTGACCGTGGCCGGGCTCGGCTTCCTGGGCCTCGGCGCCCAGCCGCCGAGCCCCGAGTGGGGCTTCATGGTGGCCTCGGG
CCGCGGCGTGCTGCTCGACGCCTGGTGGGTGGCGACGCTGCCCGGCATCGCGATCCTGCTCGTGAGCCTCGCCTTCAACC
TGCTCGGCGACGGGCTGCGCGACGTGCTCGACCCGCGCCACGGAGCCTGA

Upstream 100 bases:

>100_bases
GCGCTCTATCGCGTGTTCGATCCGCGCGCGCGATGAACGGCCCGCGCGCCGTACCGCCGCTCATGCCGCTCATGCCGCCC
ATGCCCTGCCCGAACCGCCG

Downstream 100 bases:

>100_bases
GATGAACGTGCCGCCACCCAACACCCCGCCGGGCGAGCCGGCCCCGCTGGTCGAGATCGACGGCCTGCGGATCGGCTTTC
GCGGCCACGACGGCACGCTC

Product: dipeptide/oligopeptide/nickel ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MTQPPASPGATTRRAWLLTDTPASRLQASLGLAYRRWRRFARNPLNLLGLAILAVLILVALAAPLLMPHDPLAQVLAERL
LPPGTPSHWLGTDQLGRDIGSRLIGGARITLGIAILVVAIVVPLGVLIGTTAGFAGGFVDSVLMRLTDIALAFPKIVLAL
AFAAALGPGVVNAVVAISITAWPAYARLARAETIRIAQADFIHAARLQGASGWRILRRYIVPLCLSSVIVRATLDMAGII
LTVAGLGFLGLGAQPPSPEWGFMVASGRGVLLDAWWVATLPGIAILLVSLAFNLLGDGLRDVLDPRHGA

Sequences:

>Translated_309_residues
MTQPPASPGATTRRAWLLTDTPASRLQASLGLAYRRWRRFARNPLNLLGLAILAVLILVALAAPLLMPHDPLAQVLAERL
LPPGTPSHWLGTDQLGRDIGSRLIGGARITLGIAILVVAIVVPLGVLIGTTAGFAGGFVDSVLMRLTDIALAFPKIVLAL
AFAAALGPGVVNAVVAISITAWPAYARLARAETIRIAQADFIHAARLQGASGWRILRRYIVPLCLSSVIVRATLDMAGII
LTVAGLGFLGLGAQPPSPEWGFMVASGRGVLLDAWWVATLPGIAILLVSLAFNLLGDGLRDVLDPRHGA
>Mature_308_residues
TQPPASPGATTRRAWLLTDTPASRLQASLGLAYRRWRRFARNPLNLLGLAILAVLILVALAAPLLMPHDPLAQVLAERLL
PPGTPSHWLGTDQLGRDIGSRLIGGARITLGIAILVVAIVVPLGVLIGTTAGFAGGFVDSVLMRLTDIALAFPKIVLALA
FAAALGPGVVNAVVAISITAWPAYARLARAETIRIAQADFIHAARLQGASGWRILRRYIVPLCLSSVIVRATLDMAGIIL
TVAGLGFLGLGAQPPSPEWGFMVASGRGVLLDAWWVATLPGIAILLVSLAFNLLGDGLRDVLDPRHGA

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=266, Percent_Identity=45.4887218045113, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI1787054, Length=273, Percent_Identity=42.8571428571429, Blast_Score=214, Evalue=4e-57,
Organism=Escherichia coli, GI1789964, Length=275, Percent_Identity=44.3636363636364, Blast_Score=197, Evalue=6e-52,
Organism=Escherichia coli, GI1789889, Length=244, Percent_Identity=41.3934426229508, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1787549, Length=269, Percent_Identity=36.4312267657993, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787498, Length=271, Percent_Identity=33.9483394833948, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=27.8761061946903, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32464; Mature: 32333

Theoretical pI: Translated: 11.82; Mature: 11.82

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPPASPGATTRRAWLLTDTPASRLQASLGLAYRRWRRFARNPLNLLGLAILAVLILVA
CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LAAPLLMPHDPLAQVLAERLLPPGTPSHWLGTDQLGRDIGSRLIGGARITLGIAILVVAI
HHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
VVPLGVLIGTTAGFAGGFVDSVLMRLTDIALAFPKIVLALAFAAALGPGVVNAVVAISIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
AWPAYARLARAETIRIAQADFIHAARLQGASGWRILRRYIVPLCLSSVIVRATLDMAGII
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTVAGLGFLGLGAQPPSPEWGFMVASGRGVLLDAWWVATLPGIAILLVSLAFNLLGDGLR
HHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVLDPRHGA
HHCCCCCCC
>Mature Secondary Structure 
TQPPASPGATTRRAWLLTDTPASRLQASLGLAYRRWRRFARNPLNLLGLAILAVLILVA
CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH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HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]