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The map label for this gene is dppD [H]

Identifier: 238024758

GI number: 238024758

Start: 1788862

End: 1789749

Strand: Direct

Name: dppD [H]

Synonym: bglu_2g13960

Alternate gene names: 238024758

Gene position: 1788862-1789749 (Clockwise)

Preceding gene: 238024757

Following gene: 238024759

Centisome position: 63.27

GC content: 74.55

Gene sequence:

>888_bases
ATGAACGTGCCGCCACCCAACACCCCGCCGGGCGAGCCGGCCCCGCTGGTCGAGATCGACGGCCTGCGGATCGGCTTTCG
CGGCCACGACGGCACGCTCACCGACGCCGTGCGCGACCTCTCGCTCACGCTCGCGCCGGGCGAGCGGCTCGGCATCGTCG
GCGAATCGGGCTCGGGCAAGTCGCTGACCGGCCGCGCGCTGCTGGGGCTGCTGCCGCCGGCCGCGCAATGGAGCGCGCGC
GGCTTGCGCTTCGCCGGCCGCGACCTGCTGACGATGCGCGCCGGCGAGCGGCGGCGCCTGTGCGGCGCCGAGATCGCGAT
GATCCTGCAGGACCCGAAGTATTCGCTGAACCCGGTGATGACGGTGGCGCGCCAGATGGCCGAGGCGTTCCGGCTGCGCG
AGCCGGGCCTGCGCGGCCGCGCGCTGCGCGAGCGGATCGTCGCGGCGCTCGCGGCGGTCGGCATCGACGCGCCCGCGCGC
GTGGCCGACGCCTATCCGCACGAGCTGTCGGGCGGCATGGGCCAGCGCGTGATGATCGCGATGATGGTGTCCACCGGGCC
GCGCCTGCTGATCGCCGACGAACCCACCTCGGCGCTCGACGTGGCGGTGTCGCTGCAGGTGCTGGCCGTGCTCGACGCGA
TGATCGCGCGTCACGGCACCGGGCTGATCCTGATCAGCCACGACCTGCCGCTCGTGATGTCGTTCTGCGACCGCGTGGCC
GTGATGGTGGCGGGCCGCGTGGTGGAAACCTGCGCCGCGCGCGAGCTGGCGCACGCGCGGCACCCCTATACGCGCGCGCT
GCTCGGCGCGAGCCCGTCGCTGACGGCGCCGCCCGAGGAACTGCCGGTGGCCGCTTTCGATCCGGCCTGGCTGGAGGAGG
CGCCATGA

Upstream 100 bases:

>100_bases
GCGACGCTGCCCGGCATCGCGATCCTGCTCGTGAGCCTCGCCTTCAACCTGCTCGGCGACGGGCTGCGCGACGTGCTCGA
CCCGCGCCACGGAGCCTGAG

Downstream 100 bases:

>100_bases
CGGCCCGCCCCGATGCGGCCCGCGAGGCCGCCCGGCCGATGATCGACGTGCGTGCCGTGTCGGTGCGCTTCGCGACGCGC
GCGGGCCACGTGGATGCGGT

Product: dipeptide/oligopeptide/nickel family ABC transporter ATPase

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MNVPPPNTPPGEPAPLVEIDGLRIGFRGHDGTLTDAVRDLSLTLAPGERLGIVGESGSGKSLTGRALLGLLPPAAQWSAR
GLRFAGRDLLTMRAGERRRLCGAEIAMILQDPKYSLNPVMTVARQMAEAFRLREPGLRGRALRERIVAALAAVGIDAPAR
VADAYPHELSGGMGQRVMIAMMVSTGPRLLIADEPTSALDVAVSLQVLAVLDAMIARHGTGLILISHDLPLVMSFCDRVA
VMVAGRVVETCAARELAHARHPYTRALLGASPSLTAPPEELPVAAFDPAWLEEAP

Sequences:

>Translated_295_residues
MNVPPPNTPPGEPAPLVEIDGLRIGFRGHDGTLTDAVRDLSLTLAPGERLGIVGESGSGKSLTGRALLGLLPPAAQWSAR
GLRFAGRDLLTMRAGERRRLCGAEIAMILQDPKYSLNPVMTVARQMAEAFRLREPGLRGRALRERIVAALAAVGIDAPAR
VADAYPHELSGGMGQRVMIAMMVSTGPRLLIADEPTSALDVAVSLQVLAVLDAMIARHGTGLILISHDLPLVMSFCDRVA
VMVAGRVVETCAARELAHARHPYTRALLGASPSLTAPPEELPVAAFDPAWLEEAP
>Mature_295_residues
MNVPPPNTPPGEPAPLVEIDGLRIGFRGHDGTLTDAVRDLSLTLAPGERLGIVGESGSGKSLTGRALLGLLPPAAQWSAR
GLRFAGRDLLTMRAGERRRLCGAEIAMILQDPKYSLNPVMTVARQMAEAFRLREPGLRGRALRERIVAALAAVGIDAPAR
VADAYPHELSGGMGQRVMIAMMVSTGPRLLIADEPTSALDVAVSLQVLAVLDAMIARHGTGLILISHDLPLVMSFCDRVA
VMVAGRVVETCAARELAHARHPYTRALLGASPSLTAPPEELPVAAFDPAWLEEAP

Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=213, Percent_Identity=24.4131455399061, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI150417984, Length=284, Percent_Identity=29.5774647887324, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1789963, Length=267, Percent_Identity=46.0674157303371, Blast_Score=218, Evalue=3e-58,
Organism=Escherichia coli, GI48994883, Length=267, Percent_Identity=44.1947565543071, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=45.3846153846154, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI145693107, Length=278, Percent_Identity=42.8057553956835, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1787759, Length=270, Percent_Identity=42.2222222222222, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1787500, Length=266, Percent_Identity=40.6015037593985, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1787548, Length=265, Percent_Identity=37.3584905660377, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1787758, Length=260, Percent_Identity=35.7692307692308, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1789962, Length=244, Percent_Identity=37.7049180327869, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1789890, Length=240, Percent_Identity=38.3333333333333, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI48994997, Length=233, Percent_Identity=34.3347639484979, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1789891, Length=235, Percent_Identity=37.4468085106383, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789032, Length=238, Percent_Identity=35.2941176470588, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787547, Length=264, Percent_Identity=30.6818181818182, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1787370, Length=250, Percent_Identity=31.6, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786398, Length=253, Percent_Identity=30.8300395256917, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87081791, Length=253, Percent_Identity=33.201581027668, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789672, Length=240, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790467, Length=257, Percent_Identity=28.7937743190661, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788761, Length=237, Percent_Identity=28.6919831223629, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787712, Length=237, Percent_Identity=29.535864978903, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788450, Length=214, Percent_Identity=28.9719626168224, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081834, Length=210, Percent_Identity=31.9047619047619, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787029, Length=217, Percent_Identity=30.8755760368664, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787105, Length=240, Percent_Identity=32.0833333333333, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789991, Length=216, Percent_Identity=29.6296296296296, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788225, Length=261, Percent_Identity=29.5019157088123, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790525, Length=224, Percent_Identity=26.7857142857143, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=31.3559322033898, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=31.4814814814815, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787089, Length=234, Percent_Identity=28.2051282051282, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788644, Length=158, Percent_Identity=34.1772151898734, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786345, Length=217, Percent_Identity=32.258064516129, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082267, Length=221, Percent_Identity=29.8642533936652, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87081709, Length=231, Percent_Identity=25.5411255411255, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786253, Length=233, Percent_Identity=30.0429184549356, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788165, Length=204, Percent_Identity=31.3725490196078, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081782, Length=242, Percent_Identity=28.099173553719, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786872, Length=230, Percent_Identity=29.5652173913043, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786563, Length=216, Percent_Identity=29.6296296296296, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=30.9417040358744, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790739, Length=219, Percent_Identity=26.4840182648402, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI48995001, Length=264, Percent_Identity=28.030303030303, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=31.2796208530806, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=242, Percent_Identity=28.9256198347107, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24643674, Length=211, Percent_Identity=26.0663507109005, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI281363262, Length=261, Percent_Identity=26.8199233716475, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24653245, Length=261, Percent_Identity=26.8199233716475, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 31252; Mature: 31252

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVPPPNTPPGEPAPLVEIDGLRIGFRGHDGTLTDAVRDLSLTLAPGERLGIVGESGSGK
CCCCCCCCCCCCCCCEEEECCEEEEEECCCCCHHHHHHHCEEEECCCCEEEEEECCCCCC
SLTGRALLGLLPPAAQWSARGLRFAGRDLLTMRAGERRRLCGAEIAMILQDPKYSLNPVM
CCHHHHHHHHCCCCHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHEEEECCCCCCCCHHH
TVARQMAEAFRLREPGLRGRALRERIVAALAAVGIDAPARVADAYPHELSGGMGQRVMIA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCCCCCEEEE
MMVSTGPRLLIADEPTSALDVAVSLQVLAVLDAMIARHGTGLILISHDLPLVMSFCDRVA
EEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
VMVAGRVVETCAARELAHARHPYTRALLGASPSLTAPPEELPVAAFDPAWLEEAP
HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHCCEEECCCHHHCCCC
>Mature Secondary Structure
MNVPPPNTPPGEPAPLVEIDGLRIGFRGHDGTLTDAVRDLSLTLAPGERLGIVGESGSGK
CCCCCCCCCCCCCCCEEEECCEEEEEECCCCCHHHHHHHCEEEECCCCEEEEEECCCCCC
SLTGRALLGLLPPAAQWSARGLRFAGRDLLTMRAGERRRLCGAEIAMILQDPKYSLNPVM
CCHHHHHHHHCCCCHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHEEEECCCCCCCCHHH
TVARQMAEAFRLREPGLRGRALRERIVAALAAVGIDAPARVADAYPHELSGGMGQRVMIA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCCCCCEEEE
MMVSTGPRLLIADEPTSALDVAVSLQVLAVLDAMIARHGTGLILISHDLPLVMSFCDRVA
EEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
VMVAGRVVETCAARELAHARHPYTRALLGASPSLTAPPEELPVAAFDPAWLEEAP
HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHCCEEECCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]