| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
Click here to switch to the map view.
The map label for this gene is gcd [H]
Identifier: 238024650
GI number: 238024650
Start: 1628918
End: 1631431
Strand: Reverse
Name: gcd [H]
Synonym: bglu_2g12650
Alternate gene names: 238024650
Gene position: 1631431-1628918 (Counterclockwise)
Preceding gene: 238024651
Following gene: 238024649
Centisome position: 57.7
GC content: 70.37
Gene sequence:
>2514_bases ATGTCAAGACAATCCTCGTCGCTCGGTGTCGTCCGCGGGCTGACGCTGCTGTTCGCCGTGCTTGCCGGGCTGTACCTGCT GGTCGGCGGCGTCTGGCTCGCCGCGATCGGCGGCTCGGCATACTACGTGGTAGCCGGCCTCGTGCTGCTGGTATTCGCCT GGCTGATCCGAGGCCGCCGCGCCATCGCGCTCTCGGTCTATGCGCTGCTGCTGGTGGGCACGGCGATCTGGGCGGTGGGC GAATCCGGCTTCGACTTCTGGGCGCTCGCGCCGCGCTCGGGCGTGCTGGTGGTGTTCGGCGTCTGGCTGCTGCTGCTCGT CACGCGCAAGCTCGACGGCGCGCGCGCCGCGAACGGCTGGGCCCTGGCCGCCTCGCTGGTGGTCTGGGCGGGCGTGCTGG GGTACGCGAACTTCAACGATCCGCAGGAGCTGAACGGCACGCTCGCGGCCGCCGCGCCCGCGAAAACCTCGCCCGTGCCC GGCATCGCCGACGCCGACTGGCCCGCCTACGGCCGCACCCAGGACGGCACCCGCTATTCGCCGCTCAAGCAGATCACGCC CGATAACGTGAAGAACCTGCAGGTGGCGTGGACCTTCCGCACCGGCGACATGAAAGGCCCCAACGACCCGGGCGAGATCA CGGCCGAGGTCACGCCGATCAAGGTCGGCAATCTGCTCTACCTCTGCTCGCCGCACCAGATCCTGTTCGCGCTCGACGCG ACTACCGGCAAGCTCGCCTGGAAGTTCGACCCGCGCCTGAAGAACGACCCGTCGTTCCAGCACGTGACCTGCCGCGGCGT GTCGTATCACGACCTGTCGGCGGGGGGGCAGGCGGCTGCCGCGCCGCCGGCCGCCCCGGCCATGACGGCCGCCGCCGCGC CCGCTTCGGGCACGGCGGTTGCTGGCGACGCCAGCGCGGCCGATGCCGCGGCCAGCGCGCCGGCCGCTCCGGCCCCGGCC GCGACCACCGCGCAAGCCTCGCCGGCCGCCTGCACGCGCCGCATCTATCTGCCCGTCAACGACGGCCACCTCTATGCGCT CGACGCGCTGACGGGCCAGCGCTGCGCCGATTTCGGCAACAACGGCGATCTCGACCTGCAGCACGCCCAGCCGGTGACCA CGCCGGGCATGTACGAGCCGACCTCGCCGCCCGTCGTCACGAACAGCGTGATCGTGGTCGCCGGCGCGGTCGAGGACAAT TTCTCGACGCGCGAACCGTCCGGCGTGATCCGCGGCTTCGACGTGCGCACCGGCAAGCTGGTCTGGGCGTTCGATCCGGG CGCGAAGGATCCCAACCACATTCCCGGCCCGGGCCAGCACTACACCTGGAACTCGCCGAACTCGTGGGCACCGTCGGCCT ACGATGCCAAGCTCGACATCGTCTATCTGCCGATGGGCGTGACCACCCCCGACATCTGGGGCGGCAACCGCACGCCGGAG CAGGAGCGCTACGCGAGCGGCGTGCTCGCGCTGCATGCGTCCACCGGCAAGCTGGCCTGGTTCTACCAGACCTCGCATCA CGATCTCTGGGACATGGACCAGCCGGCGCAGCCCACGCTCGCCGACATCACCGACAAGAACGGCAAGACGGTGCCCGTGG TGTACGCGCCGGCCAAGACCGGCAACATCTTCGTGCTGGACCGCCGTACCGGCACGCCGGTGGTGCCGGCCCCCGAGCTG CCGGTGCCGCAGGGCCCCGCCAAGGGTGACCGGCTCTCGCCGACCCAGCCGTTCTCCGATCTCACCTTCCGTCCGAAGCA GAAGCTCACCGACGCGGACATGTGGGGCGCGACGATGTTCGACCAGCTCGTGTGCCGCGTGATGTTCCATCAGCTGCGCT ACGAAGGCACCTTCACGCCGCCGTCGGAGCAGGGCACGCTGGTGTTTCCGGGCAACCTCGGGATGTTCGAGTGGGGCGGC ATCGCCGTCGACACCGACCGCCAGATCGCGATCGCCAACCCGATCGCGCTGCCGTTCGTCTCGCGCCTGATCCCGCGCGG CCCGGGCAACCCGATGGAGCCGGAGCCGGGCGCCAAGGGCAGCGGCACCGAATCGGGCATCCAGCCGCAATACGGCGTGC CCTACGGCGTGACGCTGAACCCGTTCCTCTCGCCGCTCGGCCTGCCTTGCAAGCAGCCGGCCTGGGGCTATGTGTCGGCG ATCGACCTGAAGACCAACCAGATCGTCTGGAAGCGCCGCATCGGCACGGTGCGCGACAGCTCGCCGGTGCCGCTGCCGTT CCGGATGGGCATGCCGATGCTGGGCGGCCCGGCCACCACCGCGGGCGGCGTGTTCTTCATCGGCGCGACCGCGGACAACT ACATCCGCGCCTACGACACCGACAACGGCAAGCTGCTGTGGCAGCAGCGCCTGCCGGCCGGCGGCCAGGCCACGCCGATG ACTTACGAGGCCAACGGCCGCCAGTACGTGGTGATCTCCGCGGGCGGCCACGGCTCGTTCGGCACCAAGCTCGGCGACTA CATCATCGCCTACGCGCTGCCCGACACGAAGTAA
Upstream 100 bases:
>100_bases GCTCGCGGCTTCGTGGCCGATATAAAAAAATGATGGAGGATGACCTGCGCGCCTCGGTTGCGCAGTTTTGTGGATTAACC ATCTTAAAAAGGTTGGGATC
Downstream 100 bases:
>100_bases GCCGGCCGCGAGGCCGCGATCGGCCATGGCGGGGTACGGTGCGGCGGATGCGCGCCGTGCCTGGCCGGTGCCGCCCATGC CGGTGCGAACGGCCTGCCGT
Product: quinoprotein glucose dehydrogenase
Products: NA
Alternate protein names: Glucose dehydrogenase [pyrroloquinoline-quinone] [H]
Number of amino acids: Translated: 837; Mature: 836
Protein sequence:
>837_residues MSRQSSSLGVVRGLTLLFAVLAGLYLLVGGVWLAAIGGSAYYVVAGLVLLVFAWLIRGRRAIALSVYALLLVGTAIWAVG ESGFDFWALAPRSGVLVVFGVWLLLLVTRKLDGARAANGWALAASLVVWAGVLGYANFNDPQELNGTLAAAAPAKTSPVP GIADADWPAYGRTQDGTRYSPLKQITPDNVKNLQVAWTFRTGDMKGPNDPGEITAEVTPIKVGNLLYLCSPHQILFALDA TTGKLAWKFDPRLKNDPSFQHVTCRGVSYHDLSAGGQAAAAPPAAPAMTAAAAPASGTAVAGDASAADAAASAPAAPAPA ATTAQASPAACTRRIYLPVNDGHLYALDALTGQRCADFGNNGDLDLQHAQPVTTPGMYEPTSPPVVTNSVIVVAGAVEDN FSTREPSGVIRGFDVRTGKLVWAFDPGAKDPNHIPGPGQHYTWNSPNSWAPSAYDAKLDIVYLPMGVTTPDIWGGNRTPE QERYASGVLALHASTGKLAWFYQTSHHDLWDMDQPAQPTLADITDKNGKTVPVVYAPAKTGNIFVLDRRTGTPVVPAPEL PVPQGPAKGDRLSPTQPFSDLTFRPKQKLTDADMWGATMFDQLVCRVMFHQLRYEGTFTPPSEQGTLVFPGNLGMFEWGG IAVDTDRQIAIANPIALPFVSRLIPRGPGNPMEPEPGAKGSGTESGIQPQYGVPYGVTLNPFLSPLGLPCKQPAWGYVSA IDLKTNQIVWKRRIGTVRDSSPVPLPFRMGMPMLGGPATTAGGVFFIGATADNYIRAYDTDNGKLLWQQRLPAGGQATPM TYEANGRQYVVISAGGHGSFGTKLGDYIIAYALPDTK
Sequences:
>Translated_837_residues MSRQSSSLGVVRGLTLLFAVLAGLYLLVGGVWLAAIGGSAYYVVAGLVLLVFAWLIRGRRAIALSVYALLLVGTAIWAVG ESGFDFWALAPRSGVLVVFGVWLLLLVTRKLDGARAANGWALAASLVVWAGVLGYANFNDPQELNGTLAAAAPAKTSPVP GIADADWPAYGRTQDGTRYSPLKQITPDNVKNLQVAWTFRTGDMKGPNDPGEITAEVTPIKVGNLLYLCSPHQILFALDA TTGKLAWKFDPRLKNDPSFQHVTCRGVSYHDLSAGGQAAAAPPAAPAMTAAAAPASGTAVAGDASAADAAASAPAAPAPA ATTAQASPAACTRRIYLPVNDGHLYALDALTGQRCADFGNNGDLDLQHAQPVTTPGMYEPTSPPVVTNSVIVVAGAVEDN FSTREPSGVIRGFDVRTGKLVWAFDPGAKDPNHIPGPGQHYTWNSPNSWAPSAYDAKLDIVYLPMGVTTPDIWGGNRTPE QERYASGVLALHASTGKLAWFYQTSHHDLWDMDQPAQPTLADITDKNGKTVPVVYAPAKTGNIFVLDRRTGTPVVPAPEL PVPQGPAKGDRLSPTQPFSDLTFRPKQKLTDADMWGATMFDQLVCRVMFHQLRYEGTFTPPSEQGTLVFPGNLGMFEWGG IAVDTDRQIAIANPIALPFVSRLIPRGPGNPMEPEPGAKGSGTESGIQPQYGVPYGVTLNPFLSPLGLPCKQPAWGYVSA IDLKTNQIVWKRRIGTVRDSSPVPLPFRMGMPMLGGPATTAGGVFFIGATADNYIRAYDTDNGKLLWQQRLPAGGQATPM TYEANGRQYVVISAGGHGSFGTKLGDYIIAYALPDTK >Mature_836_residues SRQSSSLGVVRGLTLLFAVLAGLYLLVGGVWLAAIGGSAYYVVAGLVLLVFAWLIRGRRAIALSVYALLLVGTAIWAVGE SGFDFWALAPRSGVLVVFGVWLLLLVTRKLDGARAANGWALAASLVVWAGVLGYANFNDPQELNGTLAAAAPAKTSPVPG IADADWPAYGRTQDGTRYSPLKQITPDNVKNLQVAWTFRTGDMKGPNDPGEITAEVTPIKVGNLLYLCSPHQILFALDAT TGKLAWKFDPRLKNDPSFQHVTCRGVSYHDLSAGGQAAAAPPAAPAMTAAAAPASGTAVAGDASAADAAASAPAAPAPAA TTAQASPAACTRRIYLPVNDGHLYALDALTGQRCADFGNNGDLDLQHAQPVTTPGMYEPTSPPVVTNSVIVVAGAVEDNF STREPSGVIRGFDVRTGKLVWAFDPGAKDPNHIPGPGQHYTWNSPNSWAPSAYDAKLDIVYLPMGVTTPDIWGGNRTPEQ ERYASGVLALHASTGKLAWFYQTSHHDLWDMDQPAQPTLADITDKNGKTVPVVYAPAKTGNIFVLDRRTGTPVVPAPELP VPQGPAKGDRLSPTQPFSDLTFRPKQKLTDADMWGATMFDQLVCRVMFHQLRYEGTFTPPSEQGTLVFPGNLGMFEWGGI AVDTDRQIAIANPIALPFVSRLIPRGPGNPMEPEPGAKGSGTESGIQPQYGVPYGVTLNPFLSPLGLPCKQPAWGYVSAI DLKTNQIVWKRRIGTVRDSSPVPLPFRMGMPMLGGPATTAGGVFFIGATADNYIRAYDTDNGKLLWQQRLPAGGQATPMT YEANGRQYVVISAGGHGSFGTKLGDYIIAYALPDTK
Specific function: GDH is probably involved in energy conservation rather than in sugar metabolism [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=828, Percent_Identity=67.2705314009662, Blast_Score=1085, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017511 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.5.2 [H]
Molecular weight: Translated: 88751; Mature: 88620
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: PS00364 BACTERIAL_PQQ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRQSSSLGVVRGLTLLFAVLAGLYLLVGGVWLAAIGGSAYYVVAGLVLLVFAWLIRGRR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCH AIALSVYALLLVGTAIWAVGESGFDFWALAPRSGVLVVFGVWLLLLVTRKLDGARAANGW HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCCCH ALAASLVVWAGVLGYANFNDPQELNGTLAAAAPAKTSPVPGIADADWPAYGRTQDGTRYS HHHHHHHHHHHHHHCCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PLKQITPDNVKNLQVAWTFRTGDMKGPNDPGEITAEVTPIKVGNLLYLCSPHQILFALDA CHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEEECCEEEEECCCEEEEEEEC TTGKLAWKFDPRLKNDPSFQHVTCRGVSYHDLSAGGQAAAAPPAAPAMTAAAAPASGTAV CCCEEEEEECCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCHHHHHCCCCCCCEE AGDASAADAAASAPAAPAPAATTAQASPAACTRRIYLPVNDGHLYALDALTGQRCADFGN ECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHCCCC NGDLDLQHAQPVTTPGMYEPTSPPVVTNSVIVVAGAVEDNFSTREPSGVIRGFDVRTGKL CCCEEEECCCCCCCCCCCCCCCCCEEECCEEEEEEECCCCCCCCCCCCCEEEEEECCCEE VWAFDPGAKDPNHIPGPGQHYTWNSPNSWAPSAYDAKLDIVYLPMGVTTPDIWGGNRTPE EEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCH QERYASGVLALHASTGKLAWFYQTSHHDLWDMDQPAQPTLADITDKNGKTVPVVYAPAKT HHHHHCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCC GNIFVLDRRTGTPVVPAPELPVPQGPAKGDRLSPTQPFSDLTFRPKQKLTDADMWGATMF CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHH DQLVCRVMFHQLRYEGTFTPPSEQGTLVFPGNLGMFEWGGIAVDTDRQIAIANPIALPFV HHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEECCCEEECCCCEEEEECCHHHHHH SRLIPRGPGNPMEPEPGAKGSGTESGIQPQYGVPYGVTLNPFLSPLGLPCKQPAWGYVSA HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEE IDLKTNQIVWKRRIGTVRDSSPVPLPFRMGMPMLGGPATTAGGVFFIGATADNYIRAYDT EEECCCCEEEEHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEC DNGKLLWQQRLPAGGQATPMTYEANGRQYVVISAGGHGSFGTKLGDYIIAYALPDTK CCCEEEEEECCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCC >Mature Secondary Structure SRQSSSLGVVRGLTLLFAVLAGLYLLVGGVWLAAIGGSAYYVVAGLVLLVFAWLIRGRR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCH AIALSVYALLLVGTAIWAVGESGFDFWALAPRSGVLVVFGVWLLLLVTRKLDGARAANGW HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCCCH ALAASLVVWAGVLGYANFNDPQELNGTLAAAAPAKTSPVPGIADADWPAYGRTQDGTRYS HHHHHHHHHHHHHHCCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PLKQITPDNVKNLQVAWTFRTGDMKGPNDPGEITAEVTPIKVGNLLYLCSPHQILFALDA CHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEEECCEEEEECCCEEEEEEEC TTGKLAWKFDPRLKNDPSFQHVTCRGVSYHDLSAGGQAAAAPPAAPAMTAAAAPASGTAV CCCEEEEEECCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCHHHHHCCCCCCCEE AGDASAADAAASAPAAPAPAATTAQASPAACTRRIYLPVNDGHLYALDALTGQRCADFGN ECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHCCCC NGDLDLQHAQPVTTPGMYEPTSPPVVTNSVIVVAGAVEDNFSTREPSGVIRGFDVRTGKL CCCEEEECCCCCCCCCCCCCCCCCEEECCEEEEEEECCCCCCCCCCCCCEEEEEECCCEE VWAFDPGAKDPNHIPGPGQHYTWNSPNSWAPSAYDAKLDIVYLPMGVTTPDIWGGNRTPE EEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCH QERYASGVLALHASTGKLAWFYQTSHHDLWDMDQPAQPTLADITDKNGKTVPVVYAPAKT HHHHHCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCC GNIFVLDRRTGTPVVPAPELPVPQGPAKGDRLSPTQPFSDLTFRPKQKLTDADMWGATMF CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHH DQLVCRVMFHQLRYEGTFTPPSEQGTLVFPGNLGMFEWGGIAVDTDRQIAIANPIALPFV HHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEECCCEEECCCCEEEEECCHHHHHH SRLIPRGPGNPMEPEPGAKGSGTESGIQPQYGVPYGVTLNPFLSPLGLPCKQPAWGYVSA HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEE IDLKTNQIVWKRRIGTVRDSSPVPLPFRMGMPMLGGPATTAGGVFFIGATADNYIRAYDT EEECCCCEEEEHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEC DNGKLLWQQRLPAGGQATPMTYEANGRQYVVISAGGHGSFGTKLGDYIIAYALPDTK CCCEEEEEECCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2228962; 8419307; 8202364; 9278503; 8509415; 8554505 [H]