| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is degS [H]
Identifier: 238024633
GI number: 238024633
Start: 1600145
End: 1602454
Strand: Direct
Name: degS [H]
Synonym: bglu_2g12480
Alternate gene names: 238024633
Gene position: 1600145-1602454 (Clockwise)
Preceding gene: 238024630
Following gene: 238024634
Centisome position: 56.6
GC content: 74.11
Gene sequence:
>2310_bases ATGAATGCTAGCGGCTCTTCCCGCTTCCCTTCCGGCCAGCCGCGCGCGCCCCGCTCCCGGCTGGCCGCCGCGCTGGCCCG CCCGGCAAGCGCCGGCTTCGCCGCGTTCGCGGTGGGCGCGGTGCTGTCCGTCGGTGTCGCGTGGTTCGTCGGCCAGGCCT GGCAGGACTCGATGACGGCACGCTTCGAGCGCCGCGCGAGCCGCGTCACGGCCAACCTGCGGCGCGAGCTTCAGGCGGGC GGCGCCATGCTGAGCGGCGCGCGCGGCGTGCTGCGGCTGGCGCCGGGCCTCACCCCGGCGGCGTGGCGCGACTACGTGGC CACGCTCGACCCGGACGGCATGCGCGCGCCGCTCGCCGCGCTCGGCTATGCCACGGCGGGCGCCGAGGCGTCGGGCTCTG CCAGTGAGCGCCGTGGCGGCCCGAAGACCGGGCCGGACGCGGCACCGGCCAATGGCGAGCGCACCGCCCGGGTACGCTCC GTGCTACCGGCGAGCGACGCGCAGGCAGCCGCCGGCTCGGCATCGGCGGCATCGGCGGCATCGGCGGCATCGGCGGCGGC GTCCGGCGCGCTCGCTTCGCCGGGCGCGCTCGCGCCGCCCGCGTCAGCCAGGTCCCCTTCGCTCGCCTCGATCACGCTGT TCGCGCCGATCGTGCGCGGCACCCAGCCGACGCCGCCGGCTGCCGACGCAAGCGCCCTGCGACGCGCGGCCGAGACAGGC CGGCTCGTGCTCGCCGTGCGCCCCGCGCAAGGCGGCGCCCCCGCCGCGCTCACGCTCTACCTGCCGGTGGAGGCCTTCGA CGCCGCGCCCTTGGCGTCGTCCCCGGCCGCCAACGGCGCGCCGCGGCGCGCGCCGGCCGGCTACCTGTTCGCGCCGCTCG ACCCTCACGCGGCTGTTCGAGCTCGCCGGCGCCGACGATCGCAACAACAGCCTGCAGGCCTTCGCGAGCCCGGCAGCGCG CCGCTCTATGCCACCGAGACACCGCCCGCCGACGATTCGCCGCTCGCGCGCGCGAACTTCGTGCGCACCGACACGCTCGC GTTCGGCGGCGCCACGCTGACGCTCGCCTACACCGCGGTGGACGCCACCTCCGGCGCCCGCACGCTCGCCTCGGTCGTGC TGGCGGCGGGCCTGGTCGCCTCGCTGTCGCTGGCCGCCGCGCTGGCCGGCTGGTCTCGCGCCCGCGCGGCGGCCCGCACC GCGCCGAGCGGCAGCCGGCTCAACGAGGCGCGCATGATGGGCATCATCCGCTCGTCGATGGAGGCGATCATCACGGTCGA CGAGGAGCAGAAGATCGTCATCTTCAATCCGATGGCCGAAAAGGTGTTCGGCGTGTCGGCGATGGACGCGATCGGCGCGC CGCTCACGCGCTTCATCCCGCAGCGCTTTCGTCACGCGCATGCCAGCCACATCGCGCGCTTCGGCGTGACCGGCCAGTCC GAGCGGCATCTGGGCAGCCAGCGGCTGCTGTACGGGCTGCGCGCGAACGGCGACGAATTCCCGATCGAGGCGTCGATCTC GCAGATCCACGACGGCGACGGCAAGCTCTATACGGTGATGATGCGCGACGTGACCGAGCGCGTGCAGGCCGAAAACGCCT TGAAGGCCTCGCGCGAGGAATTGCGCGAGCTGTCCGCGAACCTGCAGCGGGTGCGCGAGGAGGAAAAGACCCGCATCGCG CGCGAGCTGCACGACGACCTCGGCCAGCAGCTGACGGCACTGAAGATGGACCTCTCGGCCGTCGAGCACCGGCTGCTGCG CGACGGCACCGGCGAGGCCCATGCGAGCGTGGTGGAGCCGCTGCGCGAGATGCGGCGCCTGATCGACGCGACGGTGGCCT CGGTGCGCCGCATCGCGGCCGACCTGCGGCCCGTGATGCTCGACGATCTCGGCCTCGTGCCGGCCATCGAATGGCTCGCG AACGATTTCACGAACCGCTACGGCATCGAGGTCGAGCGCCGCATCGATCCCGGCGACGTGCGGTTCCCGAACGCCACCGC GACCGCCCTGTTCCGCATCGTGCAGGAGGCGCTGACCAACGTGGCGCGCCACGCGGAAGCCTCGCACGTGGCGCTCACGC TCGGCATCGAGGACCGCCAGTGCGTGCTGCGCATCGTCGACGACGGCGTGGGCGCCGATCAAGCGGACGGCCGCCGCGCG CCCGACGACAAGTCCTTCGGCCTGCTCGGCATCCGCGAGCGCGCGCACATGCTGGGCGGCACCGTGCGCATGGAGACGGC GCGCAACCAGGGCTACGCGCTCACGATCACGATCCCCCTGCCTTCGACACCGGACCCGAACCTGCCATGA
Upstream 100 bases:
>100_bases AAGAACGAACATTCATCCCCGCCACGGACCGTCCGATGCACGTGTGCGCGTTTCCCGCACGCGGATACGACCCGGCACGC GGCACCACCGACAACTCGCC
Downstream 100 bases:
>100_bases TCCATGTGCTGATTGCCGACGATCACGCGCTCGTGCGCGACGGGCTGCGCCACATCCTGCGGGACGCCACCGGCTTCGAA GTCGCCGGCGAAGCCTACGA
Product: multi-sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 769; Mature: 769
Protein sequence:
>769_residues MNASGSSRFPSGQPRAPRSRLAAALARPASAGFAAFAVGAVLSVGVAWFVGQAWQDSMTARFERRASRVTANLRRELQAG GAMLSGARGVLRLAPGLTPAAWRDYVATLDPDGMRAPLAALGYATAGAEASGSASERRGGPKTGPDAAPANGERTARVRS VLPASDAQAAAGSASAASAASAASAAASGALASPGALAPPASARSPSLASITLFAPIVRGTQPTPPAADASALRRAAETG RLVLAVRPAQGGAPAALTLYLPVEAFDAAPLASSPAANGAPRRAPAGYLFAPLDPHAAVRARRRRRSQQQPAGLREPGSA PLYATETPPADDSPLARANFVRTDTLAFGGATLTLAYTAVDATSGARTLASVVLAAGLVASLSLAAALAGWSRARAAART APSGSRLNEARMMGIIRSSMEAIITVDEEQKIVIFNPMAEKVFGVSAMDAIGAPLTRFIPQRFRHAHASHIARFGVTGQS ERHLGSQRLLYGLRANGDEFPIEASISQIHDGDGKLYTVMMRDVTERVQAENALKASREELRELSANLQRVREEEKTRIA RELHDDLGQQLTALKMDLSAVEHRLLRDGTGEAHASVVEPLREMRRLIDATVASVRRIAADLRPVMLDDLGLVPAIEWLA NDFTNRYGIEVERRIDPGDVRFPNATATALFRIVQEALTNVARHAEASHVALTLGIEDRQCVLRIVDDGVGADQADGRRA PDDKSFGLLGIRERAHMLGGTVRMETARNQGYALTITIPLPSTPDPNLP
Sequences:
>Translated_769_residues MNASGSSRFPSGQPRAPRSRLAAALARPASAGFAAFAVGAVLSVGVAWFVGQAWQDSMTARFERRASRVTANLRRELQAG GAMLSGARGVLRLAPGLTPAAWRDYVATLDPDGMRAPLAALGYATAGAEASGSASERRGGPKTGPDAAPANGERTARVRS VLPASDAQAAAGSASAASAASAASAAASGALASPGALAPPASARSPSLASITLFAPIVRGTQPTPPAADASALRRAAETG RLVLAVRPAQGGAPAALTLYLPVEAFDAAPLASSPAANGAPRRAPAGYLFAPLDPHAAVRARRRRRSQQQPAGLREPGSA PLYATETPPADDSPLARANFVRTDTLAFGGATLTLAYTAVDATSGARTLASVVLAAGLVASLSLAAALAGWSRARAAART APSGSRLNEARMMGIIRSSMEAIITVDEEQKIVIFNPMAEKVFGVSAMDAIGAPLTRFIPQRFRHAHASHIARFGVTGQS ERHLGSQRLLYGLRANGDEFPIEASISQIHDGDGKLYTVMMRDVTERVQAENALKASREELRELSANLQRVREEEKTRIA RELHDDLGQQLTALKMDLSAVEHRLLRDGTGEAHASVVEPLREMRRLIDATVASVRRIAADLRPVMLDDLGLVPAIEWLA NDFTNRYGIEVERRIDPGDVRFPNATATALFRIVQEALTNVARHAEASHVALTLGIEDRQCVLRIVDDGVGADQADGRRA PDDKSFGLLGIRERAHMLGGTVRMETARNQGYALTITIPLPSTPDPNLP >Mature_769_residues MNASGSSRFPSGQPRAPRSRLAAALARPASAGFAAFAVGAVLSVGVAWFVGQAWQDSMTARFERRASRVTANLRRELQAG GAMLSGARGVLRLAPGLTPAAWRDYVATLDPDGMRAPLAALGYATAGAEASGSASERRGGPKTGPDAAPANGERTARVRS VLPASDAQAAAGSASAASAASAASAAASGALASPGALAPPASARSPSLASITLFAPIVRGTQPTPPAADASALRRAAETG RLVLAVRPAQGGAPAALTLYLPVEAFDAAPLASSPAANGAPRRAPAGYLFAPLDPHAAVRARRRRRSQQQPAGLREPGSA PLYATETPPADDSPLARANFVRTDTLAFGGATLTLAYTAVDATSGARTLASVVLAAGLVASLSLAAALAGWSRARAAART APSGSRLNEARMMGIIRSSMEAIITVDEEQKIVIFNPMAEKVFGVSAMDAIGAPLTRFIPQRFRHAHASHIARFGVTGQS ERHLGSQRLLYGLRANGDEFPIEASISQIHDGDGKLYTVMMRDVTERVQAENALKASREELRELSANLQRVREEEKTRIA RELHDDLGQQLTALKMDLSAVEHRLLRDGTGEAHASVVEPLREMRRLIDATVASVRRIAADLRPVMLDDLGLVPAIEWLA NDFTNRYGIEVERRIDPGDVRFPNATATALFRIVQEALTNVARHAEASHVALTLGIEDRQCVLRIVDDGVGADQADGRRA PDDKSFGLLGIRERAHMLGGTVRMETARNQGYALTITIPLPSTPDPNLP
Specific function: Involved in a sensory transduction pathway that affect the production of enzymes that degrade polymeric carbon and nitrogen sources. DegS probably acts as a kinase that phosphorylates degU [H]
COG id: COG4585
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1787474, Length=221, Percent_Identity=29.8642533936652, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI87082311, Length=243, Percent_Identity=35.3909465020576, Blast_Score=82, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR008595 - InterPro: IPR011712 - InterPro: IPR005467 - InterPro: IPR016381 [H]
Pfam domain/function: PF05384 DegS; PF02518 HATPase_c; PF07730 HisKA_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 80766; Mature: 80766
Theoretical pI: Translated: 10.54; Mature: 10.54
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNASGSSRFPSGQPRAPRSRLAAALARPASAGFAAFAVGAVLSVGVAWFVGQAWQDSMTA CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFERRASRVTANLRRELQAGGAMLSGARGVLRLAPGLTPAAWRDYVATLDPDGMRAPLAA HHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHH LGYATAGAEASGSASERRGGPKTGPDAAPANGERTARVRSVLPASDAQAAAGSASAASAA HHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHH SAASAAASGALASPGALAPPASARSPSLASITLFAPIVRGTQPTPPAADASALRRAAETG HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC RLVLAVRPAQGGAPAALTLYLPVEAFDAAPLASSPAANGAPRRAPAGYLFAPLDPHAAVR CEEEEEECCCCCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHH ARRRRRSQQQPAGLREPGSAPLYATETPPADDSPLARANFVRTDTLAFGGATLTLAYTAV HHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCEEHHHHEECCEEEEEEEEEC DATSGARTLASVVLAAGLVASLSLAAALAGWSRARAAARTAPSGSRLNEARMMGIIRSSM CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC EAIITVDEEQKIVIFNPMAEKVFGVSAMDAIGAPLTRFIPQRFRHAHASHIARFGVTGQS CEEEEECCCCEEEEECCHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCH ERHLGSQRLLYGLRANGDEFPIEASISQIHDGDGKLYTVMMRDVTERVQAENALKASREE HHHCCCHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH LRELSANLQRVREEEKTRIARELHDDLGQQLTALKMDLSAVEHRLLRDGTGEAHASVVEP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LREMRRLIDATVASVRRIAADLRPVMLDDLGLVPAIEWLANDFTNRYGIEVERRIDPGDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC RFPNATATALFRIVQEALTNVARHAEASHVALTLGIEDRQCVLRIVDDGVGADQADGRRA CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCC PDDKSFGLLGIRERAHMLGGTVRMETARNQGYALTITIPLPSTPDPNLP CCCCCCCEEHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCCCCCCC >Mature Secondary Structure MNASGSSRFPSGQPRAPRSRLAAALARPASAGFAAFAVGAVLSVGVAWFVGQAWQDSMTA CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFERRASRVTANLRRELQAGGAMLSGARGVLRLAPGLTPAAWRDYVATLDPDGMRAPLAA HHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHH LGYATAGAEASGSASERRGGPKTGPDAAPANGERTARVRSVLPASDAQAAAGSASAASAA HHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHH SAASAAASGALASPGALAPPASARSPSLASITLFAPIVRGTQPTPPAADASALRRAAETG HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC RLVLAVRPAQGGAPAALTLYLPVEAFDAAPLASSPAANGAPRRAPAGYLFAPLDPHAAVR CEEEEEECCCCCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHH ARRRRRSQQQPAGLREPGSAPLYATETPPADDSPLARANFVRTDTLAFGGATLTLAYTAV HHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCEEHHHHEECCEEEEEEEEEC DATSGARTLASVVLAAGLVASLSLAAALAGWSRARAAARTAPSGSRLNEARMMGIIRSSM CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC EAIITVDEEQKIVIFNPMAEKVFGVSAMDAIGAPLTRFIPQRFRHAHASHIARFGVTGQS CEEEEECCCCEEEEECCHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCH ERHLGSQRLLYGLRANGDEFPIEASISQIHDGDGKLYTVMMRDVTERVQAENALKASREE HHHCCCHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH LRELSANLQRVREEEKTRIARELHDDLGQQLTALKMDLSAVEHRLLRDGTGEAHASVVEP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH LREMRRLIDATVASVRRIAADLRPVMLDDLGLVPAIEWLANDFTNRYGIEVERRIDPGDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC RFPNATATALFRIVQEALTNVARHAEASHVALTLGIEDRQCVLRIVDDGVGADQADGRRA CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCC PDDKSFGLLGIRERAHMLGGTVRMETARNQGYALTITIPLPSTPDPNLP CCCCCCCEEHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7765823 [H]