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The map label for this gene is ydcI [H]

Identifier: 238024594

GI number: 238024594

Start: 1542951

End: 1543940

Strand: Reverse

Name: ydcI [H]

Synonym: bglu_2g12050

Alternate gene names: 238024594

Gene position: 1543940-1542951 (Counterclockwise)

Preceding gene: 238024597

Following gene: 238024593

Centisome position: 54.61

GC content: 73.94

Gene sequence:

>990_bases
ATGTCCAACCGAATCGCCGACGGCCGCGTCAAGTTCCGGCACCTGCAGTGTTTCCTCGCGGTGGCGCAGCTGGGCGGCGT
GCAGAAGGCGGCCGAGAGCCTGTCGATCACGCAGCCGGCGGTGTCGAAGACGATCGCGGAACTCGAATCGATCCTCGGCG
TGAAGCTGTTCGAGCGCGGCCGGCAGGGCGCGCAGCCCACCCGCGAGGCGCGCCTGTTCCTGCCGCATGCCAGCGCGAGC
GTGCTGGCGCTGCGGCAGGGCGTGGGGCTGCTGGCGGGCGAGAGCAGCGGCGCGGCGGCCACGCTGGAACTCGGCATGCT
GCCCACGGTGGCGGCCTCGCTCGCGCCGGCGGTGCTCCGGGCGCTCACGGCGCGGCTGCCGCGCGTGATCGTGCGGATCG
CGACCGACGCGAACGCGCGGCTGCTGGAACGGCTCAAGTCGGGCGAGATCGAATGCGCGATCGGCCGGCTCTCGGAGCCG
GAGCGCATGGTGGGGCTGTCGTTCGAGCAGCTCTACAACGAGCCGCTGGTCGCGCTGGTGCGCGCGGGCCATCCGCTCGC
GGCGCTCGCCGCGCCGGCGGGCGAGCTGGGCCGCTTTCCGGTGGTGCTGCCGCCCTACGGCACGCTGATCCGCCAGTCGG
CCGAGCAACTGCTGGCGGCCTGCGGGGCGCCGCCGCTCGATTCGTTCGTGGAGGTGCTGTCGGTATCGGTCGGCCGCGCG
CTGGCACTGGAGAACGACGCGGTGTGGTTCGTGCCGCGCTACGCGGCCGAGTACGATCTGGCCGCGCGCACGCTGGTGCG
GCTCGCGCTGCCGGTGGAGGGCGCCGACGAACTGGTGGGGCTGCTGCTGCGCACCGACACGCGGCCGTCGCCGGCCGCGC
AGGCCCTGATCGACGCGGTGCGCAACGTCGCGCGCGATCGTTTCGCGAGTTTCGCGGCACGCCGCCCGGCGGCGCGTAAA
CGGCGTGGTTCCGCCGCGCCGCATCGGTGA

Upstream 100 bases:

>100_bases
CGGTGTCTCCTGTTTCGTATTGGAGGAAATGGCAAGACTTTAGCCAAACCGGAAAGTTATGCAAAATGACGTTTCTTCCC
ATCTCGTATAACCGTTCGTT

Downstream 100 bases:

>100_bases
TAATGGCCGCTCGGCACACTTCACGGAACCGGCTCGCAGCACGGTCCGCATGACAACGATGAACGAGAGCACTGCCGGAC
GGCGCGGGTGGAGAGACCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MSNRIADGRVKFRHLQCFLAVAQLGGVQKAAESLSITQPAVSKTIAELESILGVKLFERGRQGAQPTREARLFLPHASAS
VLALRQGVGLLAGESSGAAATLELGMLPTVAASLAPAVLRALTARLPRVIVRIATDANARLLERLKSGEIECAIGRLSEP
ERMVGLSFEQLYNEPLVALVRAGHPLAALAAPAGELGRFPVVLPPYGTLIRQSAEQLLAACGAPPLDSFVEVLSVSVGRA
LALENDAVWFVPRYAAEYDLAARTLVRLALPVEGADELVGLLLRTDTRPSPAAQALIDAVRNVARDRFASFAARRPAARK
RRGSAAPHR

Sequences:

>Translated_329_residues
MSNRIADGRVKFRHLQCFLAVAQLGGVQKAAESLSITQPAVSKTIAELESILGVKLFERGRQGAQPTREARLFLPHASAS
VLALRQGVGLLAGESSGAAATLELGMLPTVAASLAPAVLRALTARLPRVIVRIATDANARLLERLKSGEIECAIGRLSEP
ERMVGLSFEQLYNEPLVALVRAGHPLAALAAPAGELGRFPVVLPPYGTLIRQSAEQLLAACGAPPLDSFVEVLSVSVGRA
LALENDAVWFVPRYAAEYDLAARTLVRLALPVEGADELVGLLLRTDTRPSPAAQALIDAVRNVARDRFASFAARRPAARK
RRGSAAPHR
>Mature_328_residues
SNRIADGRVKFRHLQCFLAVAQLGGVQKAAESLSITQPAVSKTIAELESILGVKLFERGRQGAQPTREARLFLPHASASV
LALRQGVGLLAGESSGAAATLELGMLPTVAASLAPAVLRALTARLPRVIVRIATDANARLLERLKSGEIECAIGRLSEPE
RMVGLSFEQLYNEPLVALVRAGHPLAALAAPAGELGRFPVVLPPYGTLIRQSAEQLLAACGAPPLDSFVEVLSVSVGRAL
ALENDAVWFVPRYAAEYDLAARTLVRLALPVEGADELVGLLLRTDTRPSPAAQALIDAVRNVARDRFASFAARRPAARKR
RGSAAPHR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=299, Percent_Identity=39.7993311036789, Blast_Score=207, Evalue=9e-55,
Organism=Escherichia coli, GI1787601, Length=301, Percent_Identity=27.906976744186, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788887, Length=178, Percent_Identity=29.7752808988764, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788297, Length=168, Percent_Identity=27.9761904761905, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790399, Length=245, Percent_Identity=23.265306122449, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789506, Length=167, Percent_Identity=26.9461077844311, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI145693105, Length=227, Percent_Identity=26.431718061674, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1789204, Length=182, Percent_Identity=29.6703296703297, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI157672245, Length=177, Percent_Identity=27.683615819209, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790783, Length=312, Percent_Identity=23.7179487179487, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34955; Mature: 34824

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNRIADGRVKFRHLQCFLAVAQLGGVQKAAESLSITQPAVSKTIAELESILGVKLFERG
CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
RQGAQPTREARLFLPHASASVLALRQGVGLLAGESSGAAATLELGMLPTVAASLAPAVLR
CCCCCCCHHCEEECCCCCHHHHHHHHCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHH
ALTARLPRVIVRIATDANARLLERLKSGEIECAIGRLSEPERMVGLSFEQLYNEPLVALV
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHCCCHHHHHCCHHHHHH
RAGHPLAALAAPAGELGRFPVVLPPYGTLIRQSAEQLLAACGAPPLDSFVEVLSVSVGRA
HCCCCHHHHHCCCHHHCCCCEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LALENDAVWFVPRYAAEYDLAARTLVRLALPVEGADELVGLLLRTDTRPSPAAQALIDAV
EEECCCCEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
RNVARDRFASFAARRPAARKRRGSAAPHR
HHHHHHHHHHHHHHCCHHHHHCCCCCCCC
>Mature Secondary Structure 
SNRIADGRVKFRHLQCFLAVAQLGGVQKAAESLSITQPAVSKTIAELESILGVKLFERG
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
RQGAQPTREARLFLPHASASVLALRQGVGLLAGESSGAAATLELGMLPTVAASLAPAVLR
CCCCCCCHHCEEECCCCCHHHHHHHHCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHH
ALTARLPRVIVRIATDANARLLERLKSGEIECAIGRLSEPERMVGLSFEQLYNEPLVALV
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHCCCHHHHHCCHHHHHH
RAGHPLAALAAPAGELGRFPVVLPPYGTLIRQSAEQLLAACGAPPLDSFVEVLSVSVGRA
HCCCCHHHHHCCCHHHCCCCEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LALENDAVWFVPRYAAEYDLAARTLVRLALPVEGADELVGLLLRTDTRPSPAAQALIDAV
EEECCCCEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
RNVARDRFASFAARRPAARKRRGSAAPHR
HHHHHHHHHHHHHHCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]