Definition | Exiguobacterium sp. AT1b, complete genome. |
---|---|
Accession | NC_012673 |
Length | 2,999,895 |
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The map label for this gene is yfiS [H]
Identifier: 229918266
GI number: 229918266
Start: 2510689
End: 2511906
Strand: Reverse
Name: yfiS [H]
Synonym: EAT1b_2549
Alternate gene names: 229918266
Gene position: 2511906-2510689 (Counterclockwise)
Preceding gene: 229918267
Following gene: 229918258
Centisome position: 83.73
GC content: 51.15
Gene sequence:
>1218_bases ATGTGGAAAAATCGGAACGTCTGGATCATCTTGACGGGCGAATTCGTCGCCGGTCTTGGTCTATGGCTCGGCATCATCGG GAACTTGGAATTTATGCAAGACCGCGTCCCCTCTGACTTTGTGAAGGCGGTCATTCTCGCCATCGGCTTACTTGCCGGGG TCGCCATCGGTCCGCTCGCAGGTCGCTTGACCGACCAAGGTTCTAAGAAAAACATCATGCTCATCTCGAGCATCGTCCGG GCGCTCAGCGTGATCTTCATGTTCGTCGCCATCGAGACGAATTCGGTCGTGTGGATGGTCGTCTTTTTAATCATCTTACA AGGGTCGGCCGCTTTTTACTTCCCTGCCCTGCAGGCAGCGATTCCGCTCATCGTGAAAGAACGGGAACTTCTTGCCTTGA ACGGCGTTCATATGAATGTGTCTACCTTGTCGCGTGTCATCGGGACGGCGATTGCAGGTGTCCTTTTGACACTGATCTCG CTCCGTAACGTCTACGCGCTCTCGCTCGTCGCCTACCTGTTGCTAGCGGTCGCGACGCTCTTCTTGAAACTTGATGAGAC GAAAACGCCCTCGGCGAAAAAGGTCGATGCGAAAGCGTCGAGCGGTTTCAAAGACGTCTTCCCAATCATCAAATCGATTC CAGTCATCTTCATGACACTCGTCATGACGCTCATCCCGCTCCTCTTCATCGGAGGATTCAACTTGCTCGTCATCAATATC AGTGAGTTGCAAGATTCGACGGCGATTAAAGGATGGATTTATACGGCAGAGGGACTCGCCTTCATGACAGGTGCCTTTAT GATTAAACGGATCGGAGAAAAATTCTCGGCGTTCTCGATTTTATTCTCGTTCTCGTTTTTAATCGGTGTCGCCCAACTGA TGCTCTATTTTGCGGACATCCCGTTCATGTCCATTGCTGCATTCGTCCTCTTCGGCTTCTCGGTCGGCTGTTTCTTCCCG ACAGCCGTCACGATTTTCCAGACACGGATGCCAAAAGAATATCACGGGCGCTTCTTCTCGTTCCGAAACATGCTCGACCG GATCATCTTCCAAGTCGTCCTTCTCGTGACAGGATTCTTCCTCGACTTGATCGGACTTCAGCTCATGGTCGTCTTGTTTG GAATCAGTTCGATTGCGATGACAGCCGCGTTCCTCGTCTATACGCGTAAACACAAACTGCATATCGAAGAAGATGCTACA GAGAAGATGTCTTCCTAA
Upstream 100 bases:
>100_bases TGATTGATGAAGAAGCCGACGTTCGGCTTCTTTTTTGTGGTATTCTTCACCCTACTACTTGATAATAGTGATTAGCATAT AAGAATCGAGGACTACATCT
Downstream 100 bases:
>100_bases CAAAAAAACAAGCGGTGACCGAGGTCATCGCTTCAAAATATATGATCAATTAAAGTGTATAATTTTTTTCGTAAAATCAG AATTCTAATTAATACTTATA
Product: major facilitator superfamily MFS_1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 405; Mature: 405
Protein sequence:
>405_residues MWKNRNVWIILTGEFVAGLGLWLGIIGNLEFMQDRVPSDFVKAVILAIGLLAGVAIGPLAGRLTDQGSKKNIMLISSIVR ALSVIFMFVAIETNSVVWMVVFLIILQGSAAFYFPALQAAIPLIVKERELLALNGVHMNVSTLSRVIGTAIAGVLLTLIS LRNVYALSLVAYLLLAVATLFLKLDETKTPSAKKVDAKASSGFKDVFPIIKSIPVIFMTLVMTLIPLLFIGGFNLLVINI SELQDSTAIKGWIYTAEGLAFMTGAFMIKRIGEKFSAFSILFSFSFLIGVAQLMLYFADIPFMSIAAFVLFGFSVGCFFP TAVTIFQTRMPKEYHGRFFSFRNMLDRIIFQVVLLVTGFFLDLIGLQLMVVLFGISSIAMTAAFLVYTRKHKLHIEEDAT EKMSS
Sequences:
>Translated_405_residues MWKNRNVWIILTGEFVAGLGLWLGIIGNLEFMQDRVPSDFVKAVILAIGLLAGVAIGPLAGRLTDQGSKKNIMLISSIVR ALSVIFMFVAIETNSVVWMVVFLIILQGSAAFYFPALQAAIPLIVKERELLALNGVHMNVSTLSRVIGTAIAGVLLTLIS LRNVYALSLVAYLLLAVATLFLKLDETKTPSAKKVDAKASSGFKDVFPIIKSIPVIFMTLVMTLIPLLFIGGFNLLVINI SELQDSTAIKGWIYTAEGLAFMTGAFMIKRIGEKFSAFSILFSFSFLIGVAQLMLYFADIPFMSIAAFVLFGFSVGCFFP TAVTIFQTRMPKEYHGRFFSFRNMLDRIIFQVVLLVTGFFLDLIGLQLMVVLFGISSIAMTAAFLVYTRKHKLHIEEDAT EKMSS >Mature_405_residues MWKNRNVWIILTGEFVAGLGLWLGIIGNLEFMQDRVPSDFVKAVILAIGLLAGVAIGPLAGRLTDQGSKKNIMLISSIVR ALSVIFMFVAIETNSVVWMVVFLIILQGSAAFYFPALQAAIPLIVKERELLALNGVHMNVSTLSRVIGTAIAGVLLTLIS LRNVYALSLVAYLLLAVATLFLKLDETKTPSAKKVDAKASSGFKDVFPIIKSIPVIFMTLVMTLIPLLFIGGFNLLVINI SELQDSTAIKGWIYTAEGLAFMTGAFMIKRIGEKFSAFSILFSFSFLIGVAQLMLYFADIPFMSIAAFVLFGFSVGCFFP TAVTIFQTRMPKEYHGRFFSFRNMLDRIIFQVVLLVTGFFLDLIGLQLMVVLFGISSIAMTAAFLVYTRKHKLHIEEDAT EKMSS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 44640; Mature: 44640
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWKNRNVWIILTGEFVAGLGLWLGIIGNLEFMQDRVPSDFVKAVILAIGLLAGVAIGPLA CCCCCCEEEEEECHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH GRLTDQGSKKNIMLISSIVRALSVIFMFVAIETNSVVWMVVFLIILQGSAAFYFPALQAA HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHH IPLIVKERELLALNGVHMNVSTLSRVIGTAIAGVLLTLISLRNVYALSLVAYLLLAVATL HHHHHCCCHHHEECCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLKLDETKTPSAKKVDAKASSGFKDVFPIIKSIPVIFMTLVMTLIPLLFIGGFNLLVINI HHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEH SELQDSTAIKGWIYTAEGLAFMTGAFMIKRIGEKFSAFSILFSFSFLIGVAQLMLYFADI HHHCCCHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PFMSIAAFVLFGFSVGCFFPTAVTIFQTRMPKEYHGRFFSFRNMLDRIIFQVVLLVTGFF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDLIGLQLMVVLFGISSIAMTAAFLVYTRKHKLHIEEDATEKMSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHCCC >Mature Secondary Structure MWKNRNVWIILTGEFVAGLGLWLGIIGNLEFMQDRVPSDFVKAVILAIGLLAGVAIGPLA CCCCCCEEEEEECHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH GRLTDQGSKKNIMLISSIVRALSVIFMFVAIETNSVVWMVVFLIILQGSAAFYFPALQAA HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHH IPLIVKERELLALNGVHMNVSTLSRVIGTAIAGVLLTLISLRNVYALSLVAYLLLAVATL HHHHHCCCHHHEECCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLKLDETKTPSAKKVDAKASSGFKDVFPIIKSIPVIFMTLVMTLIPLLFIGGFNLLVINI HHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEH SELQDSTAIKGWIYTAEGLAFMTGAFMIKRIGEKFSAFSILFSFSFLIGVAQLMLYFADI HHHCCCHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PFMSIAAFVLFGFSVGCFFPTAVTIFQTRMPKEYHGRFFSFRNMLDRIIFQVVLLVTGFF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDLIGLQLMVVLFGISSIAMTAAFLVYTRKHKLHIEEDATEKMSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8946165; 9384377 [H]