Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 229918258

GI number: 229918258

Start: 2502832

End: 2504424

Strand: Reverse

Name: yciR [C]

Synonym: EAT1b_2541

Alternate gene names: 229918258

Gene position: 2504424-2502832 (Counterclockwise)

Preceding gene: 229918266

Following gene: 229918255

Centisome position: 83.48

GC content: 52.73

Gene sequence:

>1593_bases
ATGATCAAGTCTTTTACGATGCGCCTCGGACTCATTTTGGCGCTCAGCATTGCCACGCTCGTCTTTTTACTGACGATCGC
ACTCACTTCCCTCATCAGTCACCGGGCATCTGACGCGCTCGAGAAAGAAATCGGGGAACGCCTCTCGACAACATCACATC
AATTGGCGGACAAACTCGATTTTTATATGTGGTCACGCTATCAAGAAGTCCAACTCTTACAAGGCCTTGATTTAGAGGAC
CGAGATGAAACACGTCGACTCCTCGATCAAGTCCAGACGAACATCCCCGCCTTCTCTTGGATGGGCGTCACGGATGCGGA
CGGGACCGTCGTCGCTTCGACGAACGGGATTCTCGAGGGAGCCTCGATTGCCGAACGACCGGTTTATCTCGAAGCACAAG
ATGCCCCCTTCATCGGAGATGTCCACGAGGCGGTCCTCTTAGCTGAATTATTGCCGAATCCGACGGGGGAACCGCTCCAA
TTCGTCGATATCAGTGTCCCGCTATTTCAGGACGGCTCGTTTCAAGGGGTACTGGCCACTCATTTAAGCTGGACCTGGGG
GAAAGAAGTGCTCGAACATTTCAATCGAACGCTCCATGAACAAGTCGATGACACGGATTTATTCGTCGTCAGTGGACGAG
ACAACGTTGTACTCCTCGGTCCAGACGACATGGTCGGAAACCCACTCCCTGTATCTTTTACAGAAGGAGCCTCCGTGAAA
GAATGGGATGACGGTCAAGACTATCTGACAGGTATGTCGATCGGAGAAGGGTATGATGAATATCCTGGACTCGGTTGGCA
GGTCGTCGTCCGTCAGCCGACGGCAGTCGCGTTTGCACCGGTCGAGACACTTGAAACGAGAATTCTATGGATTGGTTTAT
TGGCCTCACTCGTGACGGCTGTGCTCGGTTGGCTACTCGCTTCAATCGTGACGAGACCGTTGAAGCGAATCACCGAAACG
GCTTCGCTCATGGAACAAGGGAAAGCGAACACGTTCCCGCATCAATCAGGAATCGAAGAGATTGAATCGCTCGCGTTCGC
GCTCGAATCGCTCGTCACCTCCCTTACGGAGTCCGAGTCGGAACGGGTACACTTTGAAAAACTAGCGAATCGTGACGCAC
TGACCGGTCTTTCAAATCGGGTCGCCCTACGTGAACAGCTGAATCAACTACACGCCTCGAAAGAACCGTACGTCTTTTTC
TATCTCGATCTCGACGGCTTCAAGGCGGTGAATGATACATATGGTCATGCGGTTGGGGACGAGGTATTGGTCGAGGTCGC
ACACCGGTTACAGGCGCTCCCCATCGAGGAGGTTTACCCCGTCCGATTGAGCGGAGATGAGTTCTTCCTCATGTTCCCAA
GGACTGAGCGTTCGACCCAACAGATTCGGGAGGTCGGAAGCACACTCATCGAGATGATTTCTGAACCGATTACGCTAGAC
ATCGTATCGGTGAAAGTCGGGGCTAGTATCGGGGCATCCATTTGGAGTCCACCGGAACCACCACACATTGCCATCGAACA
AGCGGACGACGCGTTATATCGGTCAAAAGCGAACGGGAAACATCAACTTTCTTTCCATGAGTCGCTTTCGTGA

Upstream 100 bases:

>100_bases
GACTCGTCTTTCATTATAGCGGAAGCTCTTCTTCCTATCATGATATCGACTCGTTTTTCATAATTCTCTTTAATTCAAGC
TTTAGGAGGTTTATTTACGC

Downstream 100 bases:

>100_bases
CGTCGTTTCTCCATACGAAAAGGAGTTCGTGATGAACTCCTTTTCTTATTCTTCCGTATTCGTATTCACGTCTTCTTTCT
GTTCTTCCTCTTCTGGCATC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MIKSFTMRLGLILALSIATLVFLLTIALTSLISHRASDALEKEIGERLSTTSHQLADKLDFYMWSRYQEVQLLQGLDLED
RDETRRLLDQVQTNIPAFSWMGVTDADGTVVASTNGILEGASIAERPVYLEAQDAPFIGDVHEAVLLAELLPNPTGEPLQ
FVDISVPLFQDGSFQGVLATHLSWTWGKEVLEHFNRTLHEQVDDTDLFVVSGRDNVVLLGPDDMVGNPLPVSFTEGASVK
EWDDGQDYLTGMSIGEGYDEYPGLGWQVVVRQPTAVAFAPVETLETRILWIGLLASLVTAVLGWLLASIVTRPLKRITET
ASLMEQGKANTFPHQSGIEEIESLAFALESLVTSLTESESERVHFEKLANRDALTGLSNRVALREQLNQLHASKEPYVFF
YLDLDGFKAVNDTYGHAVGDEVLVEVAHRLQALPIEEVYPVRLSGDEFFLMFPRTERSTQQIREVGSTLIEMISEPITLD
IVSVKVGASIGASIWSPPEPPHIAIEQADDALYRSKANGKHQLSFHESLS

Sequences:

>Translated_530_residues
MIKSFTMRLGLILALSIATLVFLLTIALTSLISHRASDALEKEIGERLSTTSHQLADKLDFYMWSRYQEVQLLQGLDLED
RDETRRLLDQVQTNIPAFSWMGVTDADGTVVASTNGILEGASIAERPVYLEAQDAPFIGDVHEAVLLAELLPNPTGEPLQ
FVDISVPLFQDGSFQGVLATHLSWTWGKEVLEHFNRTLHEQVDDTDLFVVSGRDNVVLLGPDDMVGNPLPVSFTEGASVK
EWDDGQDYLTGMSIGEGYDEYPGLGWQVVVRQPTAVAFAPVETLETRILWIGLLASLVTAVLGWLLASIVTRPLKRITET
ASLMEQGKANTFPHQSGIEEIESLAFALESLVTSLTESESERVHFEKLANRDALTGLSNRVALREQLNQLHASKEPYVFF
YLDLDGFKAVNDTYGHAVGDEVLVEVAHRLQALPIEEVYPVRLSGDEFFLMFPRTERSTQQIREVGSTLIEMISEPITLD
IVSVKVGASIGASIWSPPEPPHIAIEQADDALYRSKANGKHQLSFHESLS
>Mature_530_residues
MIKSFTMRLGLILALSIATLVFLLTIALTSLISHRASDALEKEIGERLSTTSHQLADKLDFYMWSRYQEVQLLQGLDLED
RDETRRLLDQVQTNIPAFSWMGVTDADGTVVASTNGILEGASIAERPVYLEAQDAPFIGDVHEAVLLAELLPNPTGEPLQ
FVDISVPLFQDGSFQGVLATHLSWTWGKEVLEHFNRTLHEQVDDTDLFVVSGRDNVVLLGPDDMVGNPLPVSFTEGASVK
EWDDGQDYLTGMSIGEGYDEYPGLGWQVVVRQPTAVAFAPVETLETRILWIGLLASLVTAVLGWLLASIVTRPLKRITET
ASLMEQGKANTFPHQSGIEEIESLAFALESLVTSLTESESERVHFEKLANRDALTGLSNRVALREQLNQLHASKEPYVFF
YLDLDGFKAVNDTYGHAVGDEVLVEVAHRLQALPIEEVYPVRLSGDEFFLMFPRTERSTQQIREVGSTLIEMISEPITLD
IVSVKVGASIGASIWSPPEPPHIAIEQADDALYRSKANGKHQLSFHESLS

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=203, Percent_Identity=30.0492610837438, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1788956, Length=235, Percent_Identity=28.5106382978723, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=31.8918918918919, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=30.2702702702703, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=30.625, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787056, Length=159, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=31.5151515151515, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786584, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081921, Length=153, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87081974, Length=178, Percent_Identity=29.7752808988764, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=30.0613496932515, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI87081977, Length=186, Percent_Identity=32.7956989247312, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 58640; Mature: 58640

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSFTMRLGLILALSIATLVFLLTIALTSLISHRASDALEKEIGERLSTTSHQLADKLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYMWSRYQEVQLLQGLDLEDRDETRRLLDQVQTNIPAFSWMGVTDADGTVVASTNGILEG
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCCC
ASIAERPVYLEAQDAPFIGDVHEAVLLAELLPNPTGEPLQFVDISVPLFQDGSFQGVLAT
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCHHHH
HLSWTWGKEVLEHFNRTLHEQVDDTDLFVVSGRDNVVLLGPDDMVGNPLPVSFTEGASVK
HHCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCCCCCEEECCCCCCC
EWDDGQDYLTGMSIGEGYDEYPGLGWQVVVRQPTAVAFAPVETLETRILWIGLLASLVTA
CCCCCHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHH
VLGWLLASIVTRPLKRITETASLMEQGKANTFPHQSGIEEIESLAFALESLVTSLTESES
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHH
ERVHFEKLANRDALTGLSNRVALREQLNQLHASKEPYVFFYLDLDGFKAVNDTYGHAVGD
HHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHCCHHCHHHHH
EVLVEVAHRLQALPIEEVYPVRLSGDEFFLMFPRTERSTQQIREVGSTLIEMISEPITLD
HHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEE
IVSVKVGASIGASIWSPPEPPHIAIEQADDALYRSKANGKHQLSFHESLS
EEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCEEECHHHCCC
>Mature Secondary Structure
MIKSFTMRLGLILALSIATLVFLLTIALTSLISHRASDALEKEIGERLSTTSHQLADKLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYMWSRYQEVQLLQGLDLEDRDETRRLLDQVQTNIPAFSWMGVTDADGTVVASTNGILEG
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCCC
ASIAERPVYLEAQDAPFIGDVHEAVLLAELLPNPTGEPLQFVDISVPLFQDGSFQGVLAT
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCHHHH
HLSWTWGKEVLEHFNRTLHEQVDDTDLFVVSGRDNVVLLGPDDMVGNPLPVSFTEGASVK
HHCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCCCCCEEECCCCCCC
EWDDGQDYLTGMSIGEGYDEYPGLGWQVVVRQPTAVAFAPVETLETRILWIGLLASLVTA
CCCCCHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHH
VLGWLLASIVTRPLKRITETASLMEQGKANTFPHQSGIEEIESLAFALESLVTSLTESES
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHH
ERVHFEKLANRDALTGLSNRVALREQLNQLHASKEPYVFFYLDLDGFKAVNDTYGHAVGD
HHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHCCHHCHHHHH
EVLVEVAHRLQALPIEEVYPVRLSGDEFFLMFPRTERSTQQIREVGSTLIEMISEPITLD
HHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEE
IVSVKVGASIGASIWSPPEPPHIAIEQADDALYRSKANGKHQLSFHESLS
EEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCEEECHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]