Definition | Exiguobacterium sp. AT1b, complete genome. |
---|---|
Accession | NC_012673 |
Length | 2,999,895 |
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The map label for this gene is menB [H]
Identifier: 229918092
GI number: 229918092
Start: 2324521
End: 2325345
Strand: Reverse
Name: menB [H]
Synonym: EAT1b_2372
Alternate gene names: 229918092
Gene position: 2325345-2324521 (Counterclockwise)
Preceding gene: 229918093
Following gene: 229918091
Centisome position: 77.51
GC content: 51.03
Gene sequence:
>825_bases ATGGAATCAGTAGCGAACTGGACATCGGTCCGGACGTATGAAGACATTAAATATGAAACGTGGAACGGGATTGCCAAAAT CACCATCAACCGTCCCGAAGTGCGCAATGCATTCCGTCCGTTGACGGTCAACGAATTGATTGATGCATTTGCTCGCGCGC GCGACGATAAAGAAGTCGGCGTCATCATCTTGACAGGTGAAGGCGAAAAGGCATTCTGTTCAGGTGGAGACCAAAAAGTT CGCGGACATGGTGGCTACGTCGGGGAAGATGAAATCCCACGCTTGAACGTCCTCGACCTTCAGCGCTTGATTCGCGTCAT TCCAAAACCGGTCATTGCCATGGTCGCAGGTTTCGCAATCGGCGGAGGACACGTCCTTCACGTCGTCTGTGACTTGACGA TTGCAGCGGACAACGCTCGCTTCGGACAAACAGGTCCTAAAGTCGGTTCGTTCGATGCAGGATACGGTTCTGGATACTTG GCACGCATCATCGGCCATAAGAAAGCTCGTGAAATCTGGTACCTTTGCCGTCAATACGATGCACAAGAAGCACTCGACAT GGGACTCGTCAACACGGTCGTCCCACTCGATCAACTCGAAGCAGAAACGATCAAGTGGTGCCAAGAAATCTTACAACACT CACCTACAGCGCTTCGCTTCTTGAAAGCAGCAATGAACGCAGATACAGATGGTCTTGCCGGACTTCAGCAACTCGCTGGA GACGCAACGCTTCTCTACTACACGACAGATGAAGCAAAAGAAGGACGCGATGCGTTCAAAGAAAAACGTGACCCTGACTT CGGTCAATTCCCACGTTTCCCTTAA
Upstream 100 bases:
>100_bases AAAATCTATGAAATTTCAAACGCAGGGCATGCTCCTCATATCGAGAATGCATCAGAGTTTGGTACAATAATAAAGAAATT GATTTTAGGGGGTATTTAAA
Downstream 100 bases:
>100_bases TTGTTGAGAGAGTAGCGATTTCGCTACTCTTTTTTTGGAGGTGACCGCTATGTATGAATGGATTCAGAAACAGCAAGCGT CACATATCGCCCTTGTGACA
Product: naphthoate synthase
Products: NA
Alternate protein names: DHNA-CoA synthase [H]
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MESVANWTSVRTYEDIKYETWNGIAKITINRPEVRNAFRPLTVNELIDAFARARDDKEVGVIILTGEGEKAFCSGGDQKV RGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVIAMVAGFAIGGGHVLHVVCDLTIAADNARFGQTGPKVGSFDAGYGSGYL ARIIGHKKAREIWYLCRQYDAQEALDMGLVNTVVPLDQLEAETIKWCQEILQHSPTALRFLKAAMNADTDGLAGLQQLAG DATLLYYTTDEAKEGRDAFKEKRDPDFGQFPRFP
Sequences:
>Translated_274_residues MESVANWTSVRTYEDIKYETWNGIAKITINRPEVRNAFRPLTVNELIDAFARARDDKEVGVIILTGEGEKAFCSGGDQKV RGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVIAMVAGFAIGGGHVLHVVCDLTIAADNARFGQTGPKVGSFDAGYGSGYL ARIIGHKKAREIWYLCRQYDAQEALDMGLVNTVVPLDQLEAETIKWCQEILQHSPTALRFLKAAMNADTDGLAGLQQLAG DATLLYYTTDEAKEGRDAFKEKRDPDFGQFPRFP >Mature_274_residues MESVANWTSVRTYEDIKYETWNGIAKITINRPEVRNAFRPLTVNELIDAFARARDDKEVGVIILTGEGEKAFCSGGDQKV RGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVIAMVAGFAIGGGHVLHVVCDLTIAADNARFGQTGPKVGSFDAGYGSGYL ARIIGHKKAREIWYLCRQYDAQEALDMGLVNTVVPLDQLEAETIKWCQEILQHSPTALRFLKAAMNADTDGLAGLQQLAG DATLLYYTTDEAKEGRDAFKEKRDPDFGQFPRFP
Specific function: Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) [H]
COG id: COG0447
COG function: function code H; Dihydroxynaphthoic acid synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI194097323, Length=247, Percent_Identity=32.3886639676113, Blast_Score=111, Evalue=7e-25, Organism=Homo sapiens, GI31542718, Length=261, Percent_Identity=31.0344827586207, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI4502327, Length=261, Percent_Identity=31.0344827586207, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI45643119, Length=213, Percent_Identity=28.6384976525822, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI260275230, Length=213, Percent_Identity=28.6384976525822, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI260274832, Length=213, Percent_Identity=28.6384976525822, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI157694516, Length=210, Percent_Identity=26.1904761904762, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI213417737, Length=210, Percent_Identity=26.1904761904762, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI70995211, Length=232, Percent_Identity=27.1551724137931, Blast_Score=68, Evalue=7e-12, Organism=Escherichia coli, GI1788597, Length=264, Percent_Identity=70.8333333333333, Blast_Score=393, Evalue=1e-111, Organism=Escherichia coli, GI1787659, Length=245, Percent_Identity=32.2448979591837, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI221142681, Length=262, Percent_Identity=32.824427480916, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI87082183, Length=265, Percent_Identity=27.9245283018868, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787660, Length=261, Percent_Identity=31.0344827586207, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788682, Length=178, Percent_Identity=27.5280898876405, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17554946, Length=264, Percent_Identity=33.3333333333333, Blast_Score=123, Evalue=8e-29, Organism=Caenorhabditis elegans, GI25145438, Length=257, Percent_Identity=32.6848249027237, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17540714, Length=221, Percent_Identity=29.8642533936652, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17560910, Length=189, Percent_Identity=32.8042328042328, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17549921, Length=219, Percent_Identity=27.8538812785388, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17535521, Length=252, Percent_Identity=25.3968253968254, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17534483, Length=261, Percent_Identity=27.2030651340996, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17540306, Length=275, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17536985, Length=222, Percent_Identity=27.9279279279279, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI20129971, Length=266, Percent_Identity=34.9624060150376, Blast_Score=128, Evalue=3e-30, Organism=Drosophila melanogaster, GI24653477, Length=266, Percent_Identity=34.9624060150376, Blast_Score=128, Evalue=3e-30, Organism=Drosophila melanogaster, GI24653139, Length=255, Percent_Identity=29.4117647058824, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI21357171, Length=189, Percent_Identity=33.8624338624339, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI19922422, Length=274, Percent_Identity=24.4525547445255, Blast_Score=80, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 - InterPro: IPR010198 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.1.3.36 [H]
Molecular weight: Translated: 30303; Mature: 30303
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: PS00166 ENOYL_COA_HYDRATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESVANWTSVRTYEDIKYETWNGIAKITINRPEVRNAFRPLTVNELIDAFARARDDKEVG CCCCCCHHHHCHHHHCCEECCCCEEEEEECCHHHHHHCCCCCHHHHHHHHHHCCCCCCEE VIILTGEGEKAFCSGGDQKVRGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVIAMVAGFAI EEEEECCCCCHHHCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHC GGGHVLHVVCDLTIAADNARFGQTGPKVGSFDAGYGSGYLARIIGHKKAREIWYLCRQYD CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHC AQEALDMGLVNTVVPLDQLEAETIKWCQEILQHSPTALRFLKAAMNADTDGLAGLQQLAG HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCC DATLLYYTTDEAKEGRDAFKEKRDPDFGQFPRFP CCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MESVANWTSVRTYEDIKYETWNGIAKITINRPEVRNAFRPLTVNELIDAFARARDDKEVG CCCCCCHHHHCHHHHCCEECCCCEEEEEECCHHHHHHCCCCCHHHHHHHHHHCCCCCCEE VIILTGEGEKAFCSGGDQKVRGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVIAMVAGFAI EEEEECCCCCHHHCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHC GGGHVLHVVCDLTIAADNARFGQTGPKVGSFDAGYGSGYLARIIGHKKAREIWYLCRQYD CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHC AQEALDMGLVNTVVPLDQLEAETIKWCQEILQHSPTALRFLKAAMNADTDGLAGLQQLAG HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCC DATLLYYTTDEAKEGRDAFKEKRDPDFGQFPRFP CCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1629163; 8566759; 9387221; 9384377 [H]