Definition | Exiguobacterium sp. AT1b, complete genome. |
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Accession | NC_012673 |
Length | 2,999,895 |
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The map label for this gene is 229917868
Identifier: 229917868
GI number: 229917868
Start: 2090583
End: 2091788
Strand: Reverse
Name: 229917868
Synonym: EAT1b_2146
Alternate gene names: NA
Gene position: 2091788-2090583 (Counterclockwise)
Preceding gene: 229917882
Following gene: 229917867
Centisome position: 69.73
GC content: 49.67
Gene sequence:
>1206_bases ATGGGTTTATTGAACAATTCCCGATTTATGTTTATCTGGTTATCTGGAATGACGCTCACGCTCGGGTTTTCGATTTTCTT CTTGAGCGTCTCTTGGTTGACGATCGATGTGTTGAAGCAACCAACACTTCTCGGGATTATCTTGACTGCGGTCTCGTTGC CGCGTGTGGTCATGATGGTATTCGGCGGTGTGTTCGCCGACCGATTCCAAAAGAGTCGCTTGTTATGCTTAACAAATATC GGACAAGGCGTGTTGATGTTAATTGTCGTTGCGCTCCATTTTGCTGATGCGTATTCGGTGACAGCCCTCTTGATCATCTC CGTATTGTTTGGTCTTTTAGATGGCATGTCTTACCCGGCACTGTCATCACTTATGCCTTCAATCGTATCAGGTCAACAAT TGCAACGGGCAAATTCCCTTTTCCAAGGGTCGCTCGAGTTGATGTTCGTCATCGGTCCGTTCCTTGCAGGAATCCTACTG ACGTGGGGAAGTTTCGGTCTCAGTTTCGGCACGTCGGCTGCATTGATTTTCCTCTCCGCGATTTTGATCATGCCACGTCT GATTCAAGACAATATTCCCGAGGTCGCTCCACTCTCAGCGAAAGATGTACTCCTTGATTTGAAAGAGGGCATTCGTTACG TATCGCAGACACCTGTGTTACGTAGTGGGACGTTCGCCATTGCCATCGTCAACTTGTTCGTCATGGGACCACTTATCATG AGTATCCCGATTCTCGTTGGTGCGATCGGAGGGACAGCATTTGATTTGAGTATCATCGAAGGCGGGCTCGCTGTCGGGAC ATTTGTCGCAAGCTTCCTGATTCTATTGTTACGGTCGGTTCATCGTGGACGCTTCGTCTTCCGCGCCCTGTTCCTGACAC TCGGCGCCTTCTTCCTCTACACGCAAGTCCAATCGATTCCGCTTCTCGCGGTCGCGGCTTCTATGAGCGGATTTATGATC ATGCTCGTCTACTTGCCGACGGTCACCATCATGCAGGAACAAAGCGACTCTGACAAAATCGGGCGTGTCATGAGCATCAT GTCGCTCGCCGCCTCAGGCCTTGAACCGATTGCGTTCGCCATTTTATCGGTACTCGTCGCCTTGTCCGTACCAATTCAAA CGCTCTTGCTGGCGTTTGGTATAATCGGATTAGTTTGTGGTGTCCTCTTATATCTACAGAGCGAAACGTTCCGACAGACA CCGTAA
Upstream 100 bases:
>100_bases TTTCGTACCAAAGTCATGTTTCTTGACGATATGAACTTCTCGTCTTATAGTTTAGTTAACTTAACTATATTTTGAAGAAT GAAAGTAAGAGGTTATTAAC
Downstream 100 bases:
>100_bases AGAAAGGATGAATGACACGTTGAATGAAACACGAAAGCAACAAGTCCTCACGATGTATCGCCAAATCGATGAGCTTGACT TGCTGTTCACGAAATATTTC
Product: major facilitator superfamily MFS_1
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Permease; Integral Membrane Efflux Protein; Facilitator Superfamily Permease; Macrolide-Efflux Protein; Transporter Facilitator Family; Multidrug ABC Transporter Permease; Multidrug ABC Transporter; Multidrug-Efflux Transporter; Integral Membrane Protein; Transporter Facilitator Family Protein; Permease Of Facilitator Superfamily Protein; Export Protein; DrugProton Antiporter; ABC Transporter Permease; MFS Transporter; MFS Family Transporter; Tetracycline Resistance Determinant TetV; Mfs Transporter; Facilitator Superfamily MacrolideCation Symporter; Facilitator Superfamily Multidrug Resistance Protein; Drug Resistance Efflux Protein; Permease Facilitator Superfamily; Efflux Protein; MFS Macrolide/Multidrug Exporter; Multidrug Resistance Protein; Efflux Transporter Protein; Permeases Of Facilitator Superfamily; Glucose-Dependent Multidrug Resistance Protein; Facilitator Superfamily Transporter
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MGLLNNSRFMFIWLSGMTLTLGFSIFFLSVSWLTIDVLKQPTLLGIILTAVSLPRVVMMVFGGVFADRFQKSRLLCLTNI GQGVLMLIVVALHFADAYSVTALLIISVLFGLLDGMSYPALSSLMPSIVSGQQLQRANSLFQGSLELMFVIGPFLAGILL TWGSFGLSFGTSAALIFLSAILIMPRLIQDNIPEVAPLSAKDVLLDLKEGIRYVSQTPVLRSGTFAIAIVNLFVMGPLIM SIPILVGAIGGTAFDLSIIEGGLAVGTFVASFLILLLRSVHRGRFVFRALFLTLGAFFLYTQVQSIPLLAVAASMSGFMI MLVYLPTVTIMQEQSDSDKIGRVMSIMSLAASGLEPIAFAILSVLVALSVPIQTLLLAFGIIGLVCGVLLYLQSETFRQT P
Sequences:
>Translated_401_residues MGLLNNSRFMFIWLSGMTLTLGFSIFFLSVSWLTIDVLKQPTLLGIILTAVSLPRVVMMVFGGVFADRFQKSRLLCLTNI GQGVLMLIVVALHFADAYSVTALLIISVLFGLLDGMSYPALSSLMPSIVSGQQLQRANSLFQGSLELMFVIGPFLAGILL TWGSFGLSFGTSAALIFLSAILIMPRLIQDNIPEVAPLSAKDVLLDLKEGIRYVSQTPVLRSGTFAIAIVNLFVMGPLIM SIPILVGAIGGTAFDLSIIEGGLAVGTFVASFLILLLRSVHRGRFVFRALFLTLGAFFLYTQVQSIPLLAVAASMSGFMI MLVYLPTVTIMQEQSDSDKIGRVMSIMSLAASGLEPIAFAILSVLVALSVPIQTLLLAFGIIGLVCGVLLYLQSETFRQT P >Mature_400_residues GLLNNSRFMFIWLSGMTLTLGFSIFFLSVSWLTIDVLKQPTLLGIILTAVSLPRVVMMVFGGVFADRFQKSRLLCLTNIG QGVLMLIVVALHFADAYSVTALLIISVLFGLLDGMSYPALSSLMPSIVSGQQLQRANSLFQGSLELMFVIGPFLAGILLT WGSFGLSFGTSAALIFLSAILIMPRLIQDNIPEVAPLSAKDVLLDLKEGIRYVSQTPVLRSGTFAIAIVNLFVMGPLIMS IPILVGAIGGTAFDLSIIEGGLAVGTFVASFLILLLRSVHRGRFVFRALFLTLGAFFLYTQVQSIPLLAVAASMSGFMIM LVYLPTVTIMQEQSDSDKIGRVMSIMSLAASGLEPIAFAILSVLVALSVPIQTLLLAFGIIGLVCGVLLYLQSETFRQTP
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43150; Mature: 43019
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLLNNSRFMFIWLSGMTLTLGFSIFFLSVSWLTIDVLKQPTLLGIILTAVSLPRVVMMV CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH FGGVFADRFQKSRLLCLTNIGQGVLMLIVVALHFADAYSVTALLIISVLFGLLDGMSYPA HHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH LSSLMPSIVSGQQLQRANSLFQGSLELMFVIGPFLAGILLTWGSFGLSFGTSAALIFLSA HHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH ILIMPRLIQDNIPEVAPLSAKDVLLDLKEGIRYVSQTPVLRSGTFAIAIVNLFVMGPLIM HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH SIPILVGAIGGTAFDLSIIEGGLAVGTFVASFLILLLRSVHRGRFVFRALFLTLGAFFLY HHHHHHHHHCCCCEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TQVQSIPLLAVAASMSGFMIMLVYLPTVTIMQEQSDSDKIGRVMSIMSLAASGLEPIAFA HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH ILSVLVALSVPIQTLLLAFGIIGLVCGVLLYLQSETFRQTP HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GLLNNSRFMFIWLSGMTLTLGFSIFFLSVSWLTIDVLKQPTLLGIILTAVSLPRVVMMV CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH FGGVFADRFQKSRLLCLTNIGQGVLMLIVVALHFADAYSVTALLIISVLFGLLDGMSYPA HHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH LSSLMPSIVSGQQLQRANSLFQGSLELMFVIGPFLAGILLTWGSFGLSFGTSAALIFLSA HHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH ILIMPRLIQDNIPEVAPLSAKDVLLDLKEGIRYVSQTPVLRSGTFAIAIVNLFVMGPLIM HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH SIPILVGAIGGTAFDLSIIEGGLAVGTFVASFLILLLRSVHRGRFVFRALFLTLGAFFLY HHHHHHHHHCCCCEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TQVQSIPLLAVAASMSGFMIMLVYLPTVTIMQEQSDSDKIGRVMSIMSLAASGLEPIAFA HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH ILSVLVALSVPIQTLLLAFGIIGLVCGVLLYLQSETFRQTP HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA