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The map label for this gene is yfdE [H]

Identifier: 227827004

GI number: 227827004

Start: 614211

End: 615239

Strand: Direct

Name: yfdE [H]

Synonym: M1425_0662

Alternate gene names: 227827004

Gene position: 614211-615239 (Clockwise)

Preceding gene: 227827002

Following gene: 227827005

Centisome position: 23.54

GC content: 35.47

Gene sequence:

>1029_bases
ATGTATAGGGTTATTGAGTTAGGACATGTAATTTCAGTACCATTTGCAGGAGAGATTTTGAGGCATTTAGGATTTGAGGT
AATAAAGGTGGAACCACTACTAGGTGATCCAAGCAGGGCAGATGATGTTTTAGGAGATTCGATGTTTATCTTCAATAATA
GAGGTAAAAGATCCATTTCCATAGATTTAAAAAAGGATAAGGGAAGGGAAGTTTTCCTAAAACTAATAGAGAACTCCCAT
GTTTTGATAGAGAACTTATCTCCTTATGCCATGGATAGACTAGGATTATCGGATGATGTTATATTTTCAACTAATCCTTC
CTTAATATATTGCTCTGTGAAGGGATATCCTAAGGGAAAATACGAAAACTTGCCTGCTTTTGGTACTGTAATTGAAGCGG
AAAGCGGAATCATGGATGCTAATGGAAAAGCTAGACTACCGGCTTCAATAACCGATATGAATGCGTCCACATATTGTGTA
ATTACGATTTTATGGGCACTGCTTATGAAGAAACCCGGACACTATAGGGTAGACATTATTCAAACCAATACAGTTTGGTT
AGGATATTATTTCATAGCATTTCAGAAATATGGTAAGCTCTTTGAAGGAGGAAAAGACGAACTTCCCTTCTGGGCTCCTT
ACGAGCTATTCAAGAGTTCTGAGGGAAAGGAATTTTATCTAGCCGTAAATGACAATATAAAATTTACAAAACTTTGTAAG
GCATTAGGATTAGACGATCTATTGGTTGATGGAAGGTTTAAAACTAATGCGGATAGGGTTACGAATAGAAAAATATTACA
TGAAAAGCTTCAACAGAAATTCAGCTCAATGAAACTGGAAGAGATAATAAACATTTTACGCTATAATGATATACCCATAG
GTAAACTAAATAATGTAAAAGATCTAGTTAGTAATGAATTAGTGGAATGGGATATATTTGGAAACGTTAAGATTCCTAGC
CTTCCTCTACCGGGGAGTCTGAATAACCAAGATGTACCAGATTTAGGGGAAGATACTTTAAATATATAG

Upstream 100 bases:

>100_bases
AAGAAGATTATCTCAATTCCAGTATATAACTATTATTATTTATGATAGTATTAAATTGATGACAAGTTAAGTTTTTAAAT
ATAAATTGGGAAAAGGCTTT

Downstream 100 bases:

>100_bases
CAGTTGTTCTACTTTTCCTCGGTAATACAAAGTTCACGGTACTATCGATAAAGTTTTTAGATTTACGTTTAGTTGATTAA
AAACTGTGAACCCCGAGAAA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MYRVIELGHVISVPFAGEILRHLGFEVIKVEPLLGDPSRADDVLGDSMFIFNNRGKRSISIDLKKDKGREVFLKLIENSH
VLIENLSPYAMDRLGLSDDVIFSTNPSLIYCSVKGYPKGKYENLPAFGTVIEAESGIMDANGKARLPASITDMNASTYCV
ITILWALLMKKPGHYRVDIIQTNTVWLGYYFIAFQKYGKLFEGGKDELPFWAPYELFKSSEGKEFYLAVNDNIKFTKLCK
ALGLDDLLVDGRFKTNADRVTNRKILHEKLQQKFSSMKLEEIINILRYNDIPIGKLNNVKDLVSNELVEWDIFGNVKIPS
LPLPGSLNNQDVPDLGEDTLNI

Sequences:

>Translated_342_residues
MYRVIELGHVISVPFAGEILRHLGFEVIKVEPLLGDPSRADDVLGDSMFIFNNRGKRSISIDLKKDKGREVFLKLIENSH
VLIENLSPYAMDRLGLSDDVIFSTNPSLIYCSVKGYPKGKYENLPAFGTVIEAESGIMDANGKARLPASITDMNASTYCV
ITILWALLMKKPGHYRVDIIQTNTVWLGYYFIAFQKYGKLFEGGKDELPFWAPYELFKSSEGKEFYLAVNDNIKFTKLCK
ALGLDDLLVDGRFKTNADRVTNRKILHEKLQQKFSSMKLEEIINILRYNDIPIGKLNNVKDLVSNELVEWDIFGNVKIPS
LPLPGSLNNQDVPDLGEDTLNI
>Mature_342_residues
MYRVIELGHVISVPFAGEILRHLGFEVIKVEPLLGDPSRADDVLGDSMFIFNNRGKRSISIDLKKDKGREVFLKLIENSH
VLIENLSPYAMDRLGLSDDVIFSTNPSLIYCSVKGYPKGKYENLPAFGTVIEAESGIMDANGKARLPASITDMNASTYCV
ITILWALLMKKPGHYRVDIIQTNTVWLGYYFIAFQKYGKLFEGGKDELPFWAPYELFKSSEGKEFYLAVNDNIKFTKLCK
ALGLDDLLVDGRFKTNADRVTNRKILHEKLQQKFSSMKLEEIINILRYNDIPIGKLNNVKDLVSNELVEWDIFGNVKIPS
LPLPGSLNNQDVPDLGEDTLNI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=345, Percent_Identity=27.8260869565217, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI300863124, Length=320, Percent_Identity=28.125, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI300863126, Length=312, Percent_Identity=27.2435897435897, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI13376042, Length=320, Percent_Identity=25.3125, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI87082093, Length=345, Percent_Identity=28.9855072463768, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1786222, Length=149, Percent_Identity=34.2281879194631, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788717, Length=149, Percent_Identity=34.2281879194631, Blast_Score=78, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24648431, Length=327, Percent_Identity=29.6636085626911, Blast_Score=134, Evalue=7e-32,
Organism=Drosophila melanogaster, GI24585488, Length=175, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 38633; Mature: 38633

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRVIELGHVISVPFAGEILRHLGFEVIKVEPLLGDPSRADDVLGDSMFIFNNRGKRSIS
CEEEEEECCEEECCHHHHHHHHCCCEEEEEEECCCCCCCHHHHCCCCEEEEECCCCEEEE
IDLKKDKGREVFLKLIENSHVLIENLSPYAMDRLGLSDDVIFSTNPSLIYCSVKGYPKGK
EEEECCCCHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCEEEECCCCEEEEEECCCCCCC
YENLPAFGTVIEAESGIMDANGKARLPASITDMNASTYCVITILWALLMKKPGHYRVDII
CCCCCCCCEEEECCCCEECCCCCEECCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE
QTNTVWLGYYFIAFQKYGKLFEGGKDELPFWAPYELFKSSEGKEFYLAVNDNIKFTKLCK
EECEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCHHHHHH
ALGLDDLLVDGRFKTNADRVTNRKILHEKLQQKFSSMKLEEIINILRYNDIPIGKLNNVK
HHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHH
DLVSNELVEWDIFGNVKIPSLPLPGSLNNQDVPDLGEDTLNI
HHHHCCCEEEEEECCEECCCCCCCCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MYRVIELGHVISVPFAGEILRHLGFEVIKVEPLLGDPSRADDVLGDSMFIFNNRGKRSIS
CEEEEEECCEEECCHHHHHHHHCCCEEEEEEECCCCCCCHHHHCCCCEEEEECCCCEEEE
IDLKKDKGREVFLKLIENSHVLIENLSPYAMDRLGLSDDVIFSTNPSLIYCSVKGYPKGK
EEEECCCCHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCEEEECCCCEEEEEECCCCCCC
YENLPAFGTVIEAESGIMDANGKARLPASITDMNASTYCVITILWALLMKKPGHYRVDII
CCCCCCCCEEEECCCCEECCCCCEECCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE
QTNTVWLGYYFIAFQKYGKLFEGGKDELPFWAPYELFKSSEGKEFYLAVNDNIKFTKLCK
EECEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCHHHHHH
ALGLDDLLVDGRFKTNADRVTNRKILHEKLQQKFSSMKLEEIINILRYNDIPIGKLNNVK
HHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHH
DLVSNELVEWDIFGNVKIPSLPLPGSLNNQDVPDLGEDTLNI
HHHHCCCEEEEEECCEECCCCCCCCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]