Click here to switch to the map view.

The map label for this gene is rnjA [H]

Identifier: 227815537

GI number: 227815537

Start: 2684527

End: 2685660

Strand: Reverse

Name: rnjA [H]

Synonym: BAMEG_2950

Alternate gene names: 227815537

Gene position: 2685660-2684527 (Counterclockwise)

Preceding gene: 227815538

Following gene: 227815536

Centisome position: 51.35

GC content: 35.27

Gene sequence:

>1134_bases
ATGGCTAAAATAGGTAGTGAAGGCGTGCTAGCTTTACTATCTGAAAGCACAAATGCAGAACGACCAGGATTTACTCCATC
AGAAAGGTCGGTAGGGGAGCGGATAGAAGAAATATTTATGAAAGCAAATAGGAAAGTGATTATTTCTACTTTTGCTTCTA
ATGTGAATCGTGTTCAGCAAATAGTTGAAGCTTGTATAAAAACAAATCGAAAACTGGCTTTGCTCGGGAGAAGTATGGTA
AATGTAGTAGAAGTTGCTCTAGAGAAAGGGTATCTAAATATTCCAGATGGTATGTTAATTGAAGCAAGTGAGGTAAATCG
TTTAGATCCAAAGCAGGTAGCAATCCTTTGTACAGGAAGCCAAGGAGAACCAATGGCAGCTTTAGCGCGGTTAGCTAGTG
GAAACTATAGGCAAGTGGATGTTTTACCAGAAGATACGGTTATTATAGCGGCAACGCCTATTCCGGGAAATGAACGTAAC
GTTTCACGAATTATAGATAATTTATTCGCATTAGGAGCAAAAGTAATTTATGGATCAGGTAGTTCTACTGGAGTCCATGT
ATCTGGTCATGCGTATCAAGAAGAATTGAAATTAATGCTTGCGTTAATGAAGCCAAAATATTTTATCCCTATTCATGGAG
AATTTAGAATGCTACATCATCACAGTTTGTTAGCAGAATCAATAGGTGTTGAAAAAGAGAATATCTTTATCGTTCGTAAT
GGAGATGTTGTAGATATAAGTAATGAAGTGGCAATTCAATCTAGAAAAATACAGGCAGGAAATATATATGTAGATGGATT
AGGAATTGGTGATGTTGGAAATGCCTTATTACGTGATCGAAAACAACTTTCAGAAGATGGAATGCTTGTTATAGTGATTA
CTTTTAATAAAGCGGATGGAGATATAATTTCAGGTCCGGATATTATATCTCGTGGATTTGTCTATGTTCGTGATTCAGAA
GAATTTTTGAAGGAATTAAATAAATTAGCTGTTATTACGATTAATAATTTAAAGAAAGAGAAAGTGAATAGCTGGGGTAT
TTTGAAAAGAGAAGTAAGAGAAGCTTTAGGGAAGTATATATATACGAATACGAAAAGAAAGCCGATGATTCTTCCTATAA
TAATAGAGGTGTAA

Upstream 100 bases:

>100_bases
CGGTATTGCTTTCCATACACCAGAAGGTACTGTAGTACATACAGGTGATTTTAAATTTGATTTAACACCAGTAAATAACC
AACAGCCTGATATTCATAAA

Downstream 100 bases:

>100_bases
TAATGAATAAAAAGAATTCTCGTATGGGAATTCTTTTTTTGTTTTGAAGATAAAATGAACATATAATGAAGTAAATAGGA
ATGGAAGGGAATAAAAGATG

Product: ribonuclease J

Products: NA

Alternate protein names: RNase J1 [H]

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MAKIGSEGVLALLSESTNAERPGFTPSERSVGERIEEIFMKANRKVIISTFASNVNRVQQIVEACIKTNRKLALLGRSMV
NVVEVALEKGYLNIPDGMLIEASEVNRLDPKQVAILCTGSQGEPMAALARLASGNYRQVDVLPEDTVIIAATPIPGNERN
VSRIIDNLFALGAKVIYGSGSSTGVHVSGHAYQEELKLMLALMKPKYFIPIHGEFRMLHHHSLLAESIGVEKENIFIVRN
GDVVDISNEVAIQSRKIQAGNIYVDGLGIGDVGNALLRDRKQLSEDGMLVIVITFNKADGDIISGPDIISRGFVYVRDSE
EFLKELNKLAVITINNLKKEKVNSWGILKREVREALGKYIYTNTKRKPMILPIIIEV

Sequences:

>Translated_377_residues
MAKIGSEGVLALLSESTNAERPGFTPSERSVGERIEEIFMKANRKVIISTFASNVNRVQQIVEACIKTNRKLALLGRSMV
NVVEVALEKGYLNIPDGMLIEASEVNRLDPKQVAILCTGSQGEPMAALARLASGNYRQVDVLPEDTVIIAATPIPGNERN
VSRIIDNLFALGAKVIYGSGSSTGVHVSGHAYQEELKLMLALMKPKYFIPIHGEFRMLHHHSLLAESIGVEKENIFIVRN
GDVVDISNEVAIQSRKIQAGNIYVDGLGIGDVGNALLRDRKQLSEDGMLVIVITFNKADGDIISGPDIISRGFVYVRDSE
EFLKELNKLAVITINNLKKEKVNSWGILKREVREALGKYIYTNTKRKPMILPIIIEV
>Mature_376_residues
AKIGSEGVLALLSESTNAERPGFTPSERSVGERIEEIFMKANRKVIISTFASNVNRVQQIVEACIKTNRKLALLGRSMVN
VVEVALEKGYLNIPDGMLIEASEVNRLDPKQVAILCTGSQGEPMAALARLASGNYRQVDVLPEDTVIIAATPIPGNERNV
SRIIDNLFALGAKVIYGSGSSTGVHVSGHAYQEELKLMLALMKPKYFIPIHGEFRMLHHHSLLAESIGVEKENIFIVRNG
DVVDISNEVAIQSRKIQAGNIYVDGLGIGDVGNALLRDRKQLSEDGMLVIVITFNKADGDIISGPDIISRGFVYVRDSEE
FLKELNKLAVITINNLKKEKVNSWGILKREVREALGKYIYTNTKRKPMILPIIIEV

Specific function: Cleaves the 5'-leader sequence of certain mRNAs. May play a role in maturation and stability of specific mRNAs. Is also required for the maturation of the 16S rRNA. Acts preferentially on 16S rRNA precursors after association of the 30S and 50S ribosomal

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 41517; Mature: 41386

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIGSEGVLALLSESTNAERPGFTPSERSVGERIEEIFMKANRKVIISTFASNVNRVQQ
CCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHH
IVEACIKTNRKLALLGRSMVNVVEVALEKGYLNIPDGMLIEASEVNRLDPKQVAILCTGS
HHHHHHHCCCEEEEHHHHHHHHHHHHHHCCEEECCCCCEEECCCCCCCCCCEEEEEEECC
QGEPMAALARLASGNYRQVDVLPEDTVIIAATPIPGNERNVSRIIDNLFALGAKVIYGSG
CCCHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECC
SSTGVHVSGHAYQEELKLMLALMKPKYFIPIHGEFRMLHHHSLLAESIGVEKENIFIVRN
CCCCEEEECHHHHHHHHHHHHHHCCCEEEEECCCEEEHHHHHHHHHHHCCCCCCEEEEEC
GDVVDISNEVAIQSRKIQAGNIYVDGLGIGDVGNALLRDRKQLSEDGMLVIVITFNKADG
CCEEECCCCEEEEEEEEEECCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCC
DIISGPDIISRGFVYVRDSEEFLKELNKLAVITINNLKKEKVNSWGILKREVREALGKYI
CEECCCCHHHCCEEEEECCHHHHHHHCCEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHE
YTNTKRKPMILPIIIEV
EECCCCCCEEEEEEEEC
>Mature Secondary Structure 
AKIGSEGVLALLSESTNAERPGFTPSERSVGERIEEIFMKANRKVIISTFASNVNRVQQ
CCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHH
IVEACIKTNRKLALLGRSMVNVVEVALEKGYLNIPDGMLIEASEVNRLDPKQVAILCTGS
HHHHHHHCCCEEEEHHHHHHHHHHHHHHCCEEECCCCCEEECCCCCCCCCCEEEEEEECC
QGEPMAALARLASGNYRQVDVLPEDTVIIAATPIPGNERNVSRIIDNLFALGAKVIYGSG
CCCHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECC
SSTGVHVSGHAYQEELKLMLALMKPKYFIPIHGEFRMLHHHSLLAESIGVEKENIFIVRN
CCCCEEEECHHHHHHHHHHHHHHCCCEEEEECCCEEEHHHHHHHHHHHCCCCCCEEEEEC
GDVVDISNEVAIQSRKIQAGNIYVDGLGIGDVGNALLRDRKQLSEDGMLVIVITFNKADG
CCEEECCCCEEEEEEEEEECCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCC
DIISGPDIISRGFVYVRDSEEFLKELNKLAVITINNLKKEKVNSWGILKREVREALGKYI
CEECCCCHHHCCEEEEECCHHHHHHHCCEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHE
YTNTKRKPMILPIIIEV
EECCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969500; 9384377 [H]