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The map label for this gene is 227815538

Identifier: 227815538

GI number: 227815538

Start: 2685726

End: 2686199

Strand: Reverse

Name: 227815538

Synonym: BAMEG_2951

Alternate gene names: NA

Gene position: 2686199-2685726 (Counterclockwise)

Preceding gene: 227815540

Following gene: 227815537

Centisome position: 51.36

GC content: 31.43

Gene sequence:

>474_bases
TTGAAGTCATTAAAAAACAACTTGTCTATCGTTGCTTTAGGCGGAGTAAATGAAATAGGGAAAAATATGTATGCTATTCA
ATATGAAAATGATATTGTCGTTATTGATTGCGGATCTAAATTTCCAGATGAAAGTTTATTAGGAATTGATTTAATCATTC
CAGACGTCACATACTTACAAGAAAATAAAGAAAAAATTCGCGGATTAGTAGTAACGCATGGACATGAAGATCATATTGGC
GGAATACCATATTTTTTAAAACAACTAAACGTACCAATCTATGCGACGAGGTTAACGTTAGGTTTAATTGAAATTAAATT
AAAGGAACATAACCTTCAAAATGATACAGAATTAATCGTTATTCATTCAGAATCAGAAATTGATTTTGGTTCTATTAAGA
CGACTTTTTTAAAACGAATCATAGCATTCCAGATTGCCTCGGTATTGCTTTCCATACACCAGAAGGTACTGTAG

Upstream 100 bases:

>100_bases
TTTTATATGTATGAAATAGTATGAAGTCCTTTTCCATTACAAATAATAAAGCCTAAATACGATTTCACGAATTATAACTG
TGAAAGGGAGGGCATATAAT

Downstream 100 bases:

>100_bases
TACATACAGGTGATTTTAAATTTGATTTAACACCAGTAAATAACCAACAGCCTGATATTCATAAAATGGCTAAAATAGGT
AGTGAAGGCGTGCTAGCTTT

Product: RNA-metabolising metallo-beta-lactamase

Products: NA

Alternate protein names: RNase J1 [H]

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MKSLKNNLSIVALGGVNEIGKNMYAIQYENDIVVIDCGSKFPDESLLGIDLIIPDVTYLQENKEKIRGLVVTHGHEDHIG
GIPYFLKQLNVPIYATRLTLGLIEIKLKEHNLQNDTELIVIHSESEIDFGSIKTTFLKRIIAFQIASVLLSIHQKVL

Sequences:

>Translated_157_residues
MKSLKNNLSIVALGGVNEIGKNMYAIQYENDIVVIDCGSKFPDESLLGIDLIIPDVTYLQENKEKIRGLVVTHGHEDHIG
GIPYFLKQLNVPIYATRLTLGLIEIKLKEHNLQNDTELIVIHSESEIDFGSIKTTFLKRIIAFQIASVLLSIHQKVL
>Mature_157_residues
MKSLKNNLSIVALGGVNEIGKNMYAIQYENDIVVIDCGSKFPDESLLGIDLIIPDVTYLQENKEKIRGLVVTHGHEDHIG
GIPYFLKQLNVPIYATRLTLGLIEIKLKEHNLQNDTELIVIHSESEIDFGSIKTTFLKRIIAFQIASVLLSIHQKVL

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 17608; Mature: 17608

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLKNNLSIVALGGVNEIGKNMYAIQYENDIVVIDCGSKFPDESLLGIDLIIPDVTYLQ
CCCCCCCEEEEEECCCHHHCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEECCCHHHHH
ENKEKIRGLVVTHGHEDHIGGIPYFLKQLNVPIYATRLTLGLIEIKLKEHNLQNDTELIV
CCHHHHCEEEEECCCCCCCCCHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEE
IHSESEIDFGSIKTTFLKRIIAFQIASVLLSIHQKVL
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSLKNNLSIVALGGVNEIGKNMYAIQYENDIVVIDCGSKFPDESLLGIDLIIPDVTYLQ
CCCCCCCEEEEEECCCHHHCCCEEEEEECCCEEEEECCCCCCCCCCEEEEEECCCHHHHH
ENKEKIRGLVVTHGHEDHIGGIPYFLKQLNVPIYATRLTLGLIEIKLKEHNLQNDTELIV
CCHHHHCEEEEECCCCCCCCCHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEE
IHSESEIDFGSIKTTFLKRIIAFQIASVLLSIHQKVL
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA