| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is rhlB
Identifier: 227080519
GI number: 227080519
Start: 301070
End: 302386
Strand: Reverse
Name: rhlB
Synonym: VCM66_0290
Alternate gene names: 227080519
Gene position: 302386-301070 (Counterclockwise)
Preceding gene: 227080527
Following gene: 227080518
Centisome position: 10.45
GC content: 50.95
Gene sequence:
>1317_bases ATGAAAAAGACGCATATCACAGAGCATAAGTTCGCCGACTTTGGTTTACAGCCACAAGTTATTGATGGACTGGAAAAAAA GGGGTTTGTTTACTGCACCCCTATCCAAGCATTGGCGTTGCCGGTACTGCTCTCCGGCCAAGACATCGCAGGCCAGGCCC AAACAGGGACTGGTAAAACGCTCGCGTTTCTTACTGCTACCTTCAACCATTTATTGACCACACCAGCCGCTGAAGGCCGA GCAGAAACTCAGCCACGCGCCATTATTATGGCCCCGACTCGCGAACTGGCAATTCAGATCTTTAATGATGCCGAGCCTTT GTTGGCCTCCACTGGTCTGAAAGCAGCTTTGGCTTATGGTGGCGAAAGCTATGATAAGCAACTCGCAAAATTGCAAAGTG GCGTCGATATTCTGATCGGGACCACCGGCCGCATTATCGATTTCTACAAACAGCGTGTATTCAACCTCAATCACATTCAA GCAGTGGTACTGGATGAAGCAGATCGCATGTTTGATCTCGGCTTTATTAAAGACATTCGTTTCTTGTTCCGCCGTATGCC TGAGCCCAAAGATCGTCTCAACATGCTGTTCTCTGCCACCCTCTCTTACCGCGTGCAAGAGCTGGCTTTTGAACACATGA ACAATCCTGAACATGTGGTGGTAGAACCTGAGCAAAAAACCGGTCATCGCATTCAGGAAGAGCTGTTCTACCCATCGAAC GAACACAAGATGGCGCTGCTACAGACTCTTATCGAAGAAGAGTGGCCAGATCGCGCAATCATTTTTGCTAACACTAAGCA CCGCTGTGAACAGATTTGGGCACATTTGGCGGCCGATAACCACCGTGTTGGCCTACTGACTGGTGATGTACCGCAGAAAA AACGTGAGCGTATTTTAGAGCAGTTCACCCAAGGTGATGTGGACATTCTGGTTGCGACCGACGTTGCGGCGCGCGGCTTG CACATTCCTCAAGTGACCCACGTGTTTAACTACGATTTGCCTGACGATTGTGAAGACTATGTACACCGTATTGGCCGTAC GGGTCGTGCGGGCGCAAGTGGCCACTCGATAAGCTTTGCGTGTGAAGAGTACGCGATTAATTTGCCGGCGATCGAAAGCT ACATTGAGCATGCGATTCCAACCTCAGACTACGATCCTTCAGCTCTGCTGACGGACTTACCTGCGCCTCTGAGCCTACGT TCGTCGCCACAACAGCGCCGCACCAATACCGCAGGTTCTCGCAATAGCAATAATGGTGGCAATCGCAAACCTCAGCAACG CCGCCCACGCGCACCACGCCCGAAAAAGGAAGCCTGA
Upstream 100 bases:
>100_bases ATGTGATTTTCTGCACTGGTGATAACTCAACCAGTAAATAGATGCTCTATTGGAATGTATTTACTTCCGTATTGCAAGCG TAAGCTGATATTCTATAGCC
Downstream 100 bases:
>100_bases TTTCGCTATGAGCCAAGCCGTTTCTTCACCCTTGTATGCTGCCATTGATTTAGGTTCCAACAGTTTTCACATGTTGGTCG TGCGTCATATCGATGGCAGT
Product: ATP-dependent RNA helicase RhlB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 438; Mature: 438
Protein sequence:
>438_residues MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGR AETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQ AVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGL HIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLR SSPQQRRTNTAGSRNSNNGGNRKPQQRRPRAPRPKKEA
Sequences:
>Translated_438_residues MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGR AETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQ AVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGL HIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLR SSPQQRRTNTAGSRNSNNGGNRKPQQRRPRAPRPKKEA >Mature_438_residues MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGR AETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQ AVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGL HIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLR SSPQQRRTNTAGSRNSNNGGNRKPQQRRPRAPRPKKEA
Specific function: Can carry out ATP-dependent unwinding of double stranded RNA. Has a role in RNA decay. Involved in the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation
COG id: COG0513
COG function: function code LKJ; Superfamily II DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain
Homologues:
Organism=Homo sapiens, GI222352149, Length=348, Percent_Identity=39.367816091954, Blast_Score=243, Evalue=3e-64, Organism=Homo sapiens, GI41327771, Length=418, Percent_Identity=34.688995215311, Blast_Score=227, Evalue=2e-59, Organism=Homo sapiens, GI45446747, Length=346, Percent_Identity=36.7052023121387, Blast_Score=225, Evalue=6e-59, Organism=Homo sapiens, GI45446743, Length=346, Percent_Identity=36.7052023121387, Blast_Score=225, Evalue=6e-59, Organism=Homo sapiens, GI262118318, Length=354, Percent_Identity=35.3107344632768, Blast_Score=218, Evalue=9e-57, Organism=Homo sapiens, GI216548263, Length=354, Percent_Identity=35.3107344632768, Blast_Score=216, Evalue=2e-56, Organism=Homo sapiens, GI13518015, Length=354, Percent_Identity=35.3107344632768, Blast_Score=216, Evalue=2e-56, Organism=Homo sapiens, GI148613856, Length=344, Percent_Identity=38.0813953488372, Blast_Score=216, Evalue=2e-56, Organism=Homo sapiens, GI38201710, Length=344, Percent_Identity=38.0813953488372, Blast_Score=216, Evalue=2e-56, Organism=Homo sapiens, GI262231852, Length=354, Percent_Identity=35.3107344632768, Blast_Score=216, Evalue=3e-56, Organism=Homo sapiens, GI41327773, Length=361, Percent_Identity=36.01108033241, Blast_Score=213, Evalue=3e-55, Organism=Homo sapiens, GI169881239, Length=367, Percent_Identity=34.0599455040872, Blast_Score=213, Evalue=4e-55, Organism=Homo sapiens, GI13514809, Length=367, Percent_Identity=34.0599455040872, Blast_Score=213, Evalue=4e-55, Organism=Homo sapiens, GI4758138, Length=353, Percent_Identity=37.1104815864023, Blast_Score=212, Evalue=4e-55, Organism=Homo sapiens, GI301171467, Length=366, Percent_Identity=34.1530054644809, Blast_Score=212, Evalue=5e-55, Organism=Homo sapiens, GI87196351, Length=366, Percent_Identity=34.1530054644809, Blast_Score=212, Evalue=6e-55, Organism=Homo sapiens, GI301171475, Length=366, Percent_Identity=34.1530054644809, Blast_Score=212, Evalue=7e-55, Organism=Homo sapiens, GI21071032, Length=372, Percent_Identity=34.6774193548387, Blast_Score=211, Evalue=8e-55, Organism=Homo sapiens, GI55749865, Length=356, Percent_Identity=33.7078651685393, Blast_Score=208, Evalue=6e-54, Organism=Homo sapiens, GI224593278, Length=357, Percent_Identity=35.8543417366947, Blast_Score=206, Evalue=4e-53, Organism=Homo sapiens, GI20149629, Length=444, Percent_Identity=32.6576576576577, Blast_Score=205, Evalue=8e-53, Organism=Homo sapiens, GI51094101, Length=353, Percent_Identity=34.5609065155807, Blast_Score=204, Evalue=1e-52, Organism=Homo sapiens, GI7661920, Length=372, Percent_Identity=34.4086021505376, Blast_Score=204, Evalue=1e-52, Organism=Homo sapiens, GI164419743, Length=353, Percent_Identity=34.5609065155807, Blast_Score=204, Evalue=1e-52, Organism=Homo sapiens, GI50659095, Length=371, Percent_Identity=35.3099730458221, Blast_Score=196, Evalue=3e-50, Organism=Homo sapiens, GI13129006, Length=363, Percent_Identity=34.7107438016529, Blast_Score=190, Evalue=2e-48, Organism=Homo sapiens, GI164664518, Length=376, Percent_Identity=30.0531914893617, Blast_Score=180, Evalue=2e-45, Organism=Homo sapiens, GI4758112, Length=369, Percent_Identity=31.4363143631436, Blast_Score=179, Evalue=5e-45, Organism=Homo sapiens, GI18375623, Length=369, Percent_Identity=31.4363143631436, Blast_Score=179, Evalue=5e-45, Organism=Homo sapiens, GI41327776, Length=444, Percent_Identity=30.1801801801802, Blast_Score=177, Evalue=2e-44, Organism=Homo sapiens, GI21040371, Length=369, Percent_Identity=31.4363143631436, Blast_Score=175, Evalue=6e-44, Organism=Homo sapiens, GI13514831, Length=355, Percent_Identity=30.4225352112676, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI41327779, Length=414, Percent_Identity=31.8840579710145, Blast_Score=174, Evalue=2e-43, Organism=Homo sapiens, GI188035877, Length=356, Percent_Identity=32.0224719101124, Blast_Score=173, Evalue=2e-43, Organism=Homo sapiens, GI17505907, Length=407, Percent_Identity=29.7297297297297, Blast_Score=171, Evalue=2e-42, Organism=Homo sapiens, GI38327634, Length=393, Percent_Identity=30.7888040712468, Blast_Score=169, Evalue=4e-42, Organism=Homo sapiens, GI83700235, Length=368, Percent_Identity=34.7826086956522, Blast_Score=168, Evalue=1e-41, Organism=Homo sapiens, GI38569503, Length=380, Percent_Identity=29.2105263157895, Blast_Score=168, Evalue=1e-41, Organism=Homo sapiens, GI4503529, Length=373, Percent_Identity=32.9758713136729, Blast_Score=167, Evalue=1e-41, Organism=Homo sapiens, GI38569505, Length=380, Percent_Identity=29.2105263157895, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI31542656, Length=394, Percent_Identity=31.4720812182741, Blast_Score=164, Evalue=2e-40, Organism=Homo sapiens, GI6005743, Length=391, Percent_Identity=31.9693094629156, Blast_Score=163, Evalue=3e-40, Organism=Homo sapiens, GI8922886, Length=391, Percent_Identity=31.7135549872123, Blast_Score=162, Evalue=8e-40, Organism=Homo sapiens, GI256773275, Length=395, Percent_Identity=29.620253164557, Blast_Score=154, Evalue=2e-37, Organism=Homo sapiens, GI164419732, Length=349, Percent_Identity=32.0916905444126, Blast_Score=154, Evalue=2e-37, Organism=Homo sapiens, GI62241022, Length=374, Percent_Identity=32.0855614973262, Blast_Score=151, Evalue=1e-36, Organism=Homo sapiens, GI256223453, Length=392, Percent_Identity=26.2755102040816, Blast_Score=145, Evalue=9e-35, Organism=Homo sapiens, GI62241024, Length=353, Percent_Identity=31.728045325779, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI9506931, Length=398, Percent_Identity=27.8894472361809, Blast_Score=140, Evalue=3e-33, Organism=Homo sapiens, GI9966805, Length=317, Percent_Identity=32.1766561514196, Blast_Score=132, Evalue=6e-31, Organism=Homo sapiens, GI4826686, Length=336, Percent_Identity=32.1428571428571, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI20336298, Length=220, Percent_Identity=35, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI154759257, Length=411, Percent_Identity=28.2238442822384, Blast_Score=118, Evalue=1e-26, Organism=Escherichia coli, GI1790214, Length=417, Percent_Identity=75.5395683453237, Blast_Score=655, Evalue=0.0, Organism=Escherichia coli, GI1787016, Length=383, Percent_Identity=38.6422976501305, Blast_Score=271, Evalue=7e-74, Organism=Escherichia coli, GI87082221, Length=387, Percent_Identity=36.6925064599483, Blast_Score=239, Evalue=2e-64, Organism=Escherichia coli, GI1788930, Length=430, Percent_Identity=35.1162790697674, Blast_Score=221, Evalue=5e-59, Organism=Escherichia coli, GI1787605, Length=353, Percent_Identity=34.8441926345609, Blast_Score=196, Evalue=2e-51, Organism=Caenorhabditis elegans, GI71995718, Length=363, Percent_Identity=38.0165289256198, Blast_Score=240, Evalue=1e-63, Organism=Caenorhabditis elegans, GI17510309, Length=364, Percent_Identity=39.5604395604396, Blast_Score=236, Evalue=2e-62, Organism=Caenorhabditis elegans, GI17510307, Length=364, Percent_Identity=39.5604395604396, Blast_Score=236, Evalue=2e-62, Organism=Caenorhabditis elegans, GI71995514, Length=364, Percent_Identity=39.5604395604396, Blast_Score=236, Evalue=3e-62, Organism=Caenorhabditis elegans, GI32565321, Length=374, Percent_Identity=34.4919786096257, Blast_Score=218, Evalue=4e-57, Organism=Caenorhabditis elegans, GI86570094, Length=359, Percent_Identity=36.7688022284123, Blast_Score=217, Evalue=9e-57, Organism=Caenorhabditis elegans, GI17552642, Length=359, Percent_Identity=36.4902506963788, Blast_Score=211, Evalue=5e-55, Organism=Caenorhabditis elegans, GI17555296, Length=358, Percent_Identity=34.9162011173184, Blast_Score=204, Evalue=5e-53, Organism=Caenorhabditis elegans, GI115533224, Length=402, Percent_Identity=34.8258706467662, Blast_Score=203, Evalue=2e-52, Organism=Caenorhabditis elegans, GI71987143, Length=369, Percent_Identity=33.6043360433604, Blast_Score=202, Evalue=3e-52, Organism=Caenorhabditis elegans, GI17510559, Length=381, Percent_Identity=31.496062992126, Blast_Score=202, Evalue=3e-52, Organism=Caenorhabditis elegans, GI71995724, Length=372, Percent_Identity=33.6021505376344, Blast_Score=202, Evalue=4e-52, Organism=Caenorhabditis elegans, GI17507121, Length=372, Percent_Identity=33.6021505376344, Blast_Score=201, Evalue=5e-52, Organism=Caenorhabditis elegans, GI17537549, Length=361, Percent_Identity=37.6731301939058, Blast_Score=201, Evalue=5e-52, Organism=Caenorhabditis elegans, GI17507877, Length=376, Percent_Identity=34.5744680851064, Blast_Score=200, Evalue=1e-51, Organism=Caenorhabditis elegans, GI17507945, Length=350, Percent_Identity=34.2857142857143, Blast_Score=196, Evalue=2e-50, Organism=Caenorhabditis elegans, GI17507879, Length=377, Percent_Identity=33.9522546419098, Blast_Score=196, Evalue=2e-50, Organism=Caenorhabditis elegans, GI17507881, Length=367, Percent_Identity=33.5149863760218, Blast_Score=188, Evalue=4e-48, Organism=Caenorhabditis elegans, GI71999646, Length=355, Percent_Identity=32.112676056338, Blast_Score=184, Evalue=9e-47, Organism=Caenorhabditis elegans, GI71999644, Length=355, Percent_Identity=32.112676056338, Blast_Score=184, Evalue=1e-46, Organism=Caenorhabditis elegans, GI17509811, Length=369, Percent_Identity=31.9783197831978, Blast_Score=180, Evalue=1e-45, Organism=Caenorhabditis elegans, GI17552114, Length=390, Percent_Identity=31.2820512820513, Blast_Score=174, Evalue=8e-44, Organism=Caenorhabditis elegans, GI115532548, Length=383, Percent_Identity=31.331592689295, Blast_Score=169, Evalue=3e-42, Organism=Caenorhabditis elegans, GI115532546, Length=383, Percent_Identity=31.331592689295, Blast_Score=169, Evalue=3e-42, Organism=Caenorhabditis elegans, GI17508543, Length=381, Percent_Identity=28.0839895013123, Blast_Score=166, Evalue=2e-41, Organism=Caenorhabditis elegans, GI17505370, Length=360, Percent_Identity=33.0555555555556, Blast_Score=166, Evalue=2e-41, Organism=Caenorhabditis elegans, GI193208216, Length=378, Percent_Identity=31.7460317460317, Blast_Score=166, Evalue=2e-41, Organism=Caenorhabditis elegans, GI71982858, Length=368, Percent_Identity=30.4347826086957, Blast_Score=164, Evalue=8e-41, Organism=Caenorhabditis elegans, GI71990816, Length=393, Percent_Identity=32.3155216284987, Blast_Score=163, Evalue=1e-40, Organism=Caenorhabditis elegans, GI17507641, Length=384, Percent_Identity=30.46875, Blast_Score=153, Evalue=2e-37, Organism=Caenorhabditis elegans, GI17536099, Length=408, Percent_Identity=31.3725490196078, Blast_Score=152, Evalue=4e-37, Organism=Caenorhabditis elegans, GI17536101, Length=408, Percent_Identity=31.3725490196078, Blast_Score=151, Evalue=5e-37, Organism=Caenorhabditis elegans, GI17536103, Length=408, Percent_Identity=31.3725490196078, Blast_Score=150, Evalue=1e-36, Organism=Caenorhabditis elegans, GI193206561, Length=357, Percent_Identity=29.6918767507003, Blast_Score=150, Evalue=1e-36, Organism=Caenorhabditis elegans, GI32564046, Length=365, Percent_Identity=30.4109589041096, Blast_Score=144, Evalue=9e-35, Organism=Caenorhabditis elegans, GI17553716, Length=363, Percent_Identity=27.8236914600551, Blast_Score=129, Evalue=3e-30, Organism=Caenorhabditis elegans, GI25148203, Length=415, Percent_Identity=24.0963855421687, Blast_Score=127, Evalue=8e-30, Organism=Caenorhabditis elegans, GI71997889, Length=460, Percent_Identity=25.8695652173913, Blast_Score=118, Evalue=6e-27, Organism=Caenorhabditis elegans, GI25148291, Length=332, Percent_Identity=28.9156626506024, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17556951, Length=364, Percent_Identity=26.3736263736264, Blast_Score=114, Evalue=1e-25, Organism=Caenorhabditis elegans, GI25148205, Length=337, Percent_Identity=22.5519287833828, Blast_Score=92, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17557982, Length=359, Percent_Identity=23.6768802228412, Blast_Score=92, Evalue=7e-19, Organism=Caenorhabditis elegans, GI71987152, Length=92, Percent_Identity=46.7391304347826, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71982862, Length=219, Percent_Identity=28.7671232876712, Blast_Score=89, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6324778, Length=400, Percent_Identity=35.75, Blast_Score=239, Evalue=4e-64, Organism=Saccharomyces cerevisiae, GI6325138, Length=355, Percent_Identity=38.0281690140845, Blast_Score=237, Evalue=3e-63, Organism=Saccharomyces cerevisiae, GI6324217, Length=358, Percent_Identity=37.7094972067039, Blast_Score=229, Evalue=9e-61, Organism=Saccharomyces cerevisiae, GI6321360, Length=339, Percent_Identity=37.1681415929204, Blast_Score=211, Evalue=2e-55, Organism=Saccharomyces cerevisiae, GI6323021, Length=380, Percent_Identity=34.7368421052632, Blast_Score=207, Evalue=3e-54, Organism=Saccharomyces cerevisiae, GI6321856, Length=384, Percent_Identity=34.8958333333333, Blast_Score=199, Evalue=8e-52, Organism=Saccharomyces cerevisiae, GI6320173, Length=434, Percent_Identity=29.9539170506912, Blast_Score=193, Evalue=4e-50, Organism=Saccharomyces cerevisiae, GI6323947, Length=356, Percent_Identity=33.9887640449438, Blast_Score=192, Evalue=6e-50, Organism=Saccharomyces cerevisiae, GI6320224, Length=368, Percent_Identity=32.3369565217391, Blast_Score=191, Evalue=3e-49, Organism=Saccharomyces cerevisiae, GI6320041, Length=362, Percent_Identity=32.0441988950276, Blast_Score=187, Evalue=4e-48, Organism=Saccharomyces cerevisiae, GI6322912, Length=385, Percent_Identity=33.7662337662338, Blast_Score=186, Evalue=8e-48, Organism=Saccharomyces cerevisiae, GI6322323, Length=385, Percent_Identity=33.7662337662338, Blast_Score=186, Evalue=8e-48, Organism=Saccharomyces cerevisiae, GI6324620, Length=395, Percent_Identity=34.1772151898734, Blast_Score=183, Evalue=5e-47, Organism=Saccharomyces cerevisiae, GI6320449, Length=346, Percent_Identity=32.6589595375723, Blast_Score=179, Evalue=1e-45, Organism=Saccharomyces cerevisiae, GI6322427, Length=364, Percent_Identity=32.6923076923077, Blast_Score=171, Evalue=2e-43, Organism=Saccharomyces cerevisiae, GI6321963, Length=432, Percent_Identity=30.3240740740741, Blast_Score=166, Evalue=7e-42, Organism=Saccharomyces cerevisiae, GI6319714, Length=383, Percent_Identity=30.5483028720627, Blast_Score=165, Evalue=2e-41, Organism=Saccharomyces cerevisiae, GI6321267, Length=395, Percent_Identity=31.6455696202532, Blast_Score=164, Evalue=3e-41, Organism=Saccharomyces cerevisiae, GI6320119, Length=394, Percent_Identity=29.9492385786802, Blast_Score=161, Evalue=2e-40, Organism=Saccharomyces cerevisiae, GI6320400, Length=379, Percent_Identity=30.6068601583113, Blast_Score=155, Evalue=9e-39, Organism=Saccharomyces cerevisiae, GI6321111, Length=367, Percent_Identity=29.700272479564, Blast_Score=148, Evalue=2e-36, Organism=Saccharomyces cerevisiae, GI6319618, Length=411, Percent_Identity=28.2238442822384, Blast_Score=135, Evalue=1e-32, Organism=Saccharomyces cerevisiae, GI6323306, Length=423, Percent_Identity=25.2955082742317, Blast_Score=131, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6322876, Length=428, Percent_Identity=28.7383177570093, Blast_Score=125, Evalue=9e-30, Organism=Saccharomyces cerevisiae, GI6324366, Length=403, Percent_Identity=24.0694789081886, Blast_Score=101, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6321374, Length=429, Percent_Identity=24.2424242424242, Blast_Score=94, Evalue=6e-20, Organism=Drosophila melanogaster, GI24662330, Length=355, Percent_Identity=37.1830985915493, Blast_Score=231, Evalue=9e-61, Organism=Drosophila melanogaster, GI24584399, Length=351, Percent_Identity=36.4672364672365, Blast_Score=229, Evalue=3e-60, Organism=Drosophila melanogaster, GI17985987, Length=348, Percent_Identity=37.6436781609195, Blast_Score=223, Evalue=2e-58, Organism=Drosophila melanogaster, GI24642151, Length=361, Percent_Identity=36.8421052631579, Blast_Score=221, Evalue=5e-58, Organism=Drosophila melanogaster, GI28574962, Length=354, Percent_Identity=38.7005649717514, Blast_Score=221, Evalue=7e-58, Organism=Drosophila melanogaster, GI21355075, Length=369, Percent_Identity=37.6693766937669, Blast_Score=219, Evalue=2e-57, Organism=Drosophila melanogaster, GI18857967, Length=440, Percent_Identity=34.5454545454545, Blast_Score=217, Evalue=2e-56, Organism=Drosophila melanogaster, GI24584994, Length=378, Percent_Identity=35.1851851851852, Blast_Score=216, Evalue=2e-56, Organism=Drosophila melanogaster, GI21356161, Length=341, Percent_Identity=38.7096774193548, Blast_Score=216, Evalue=4e-56, Organism=Drosophila melanogaster, GI24644479, Length=375, Percent_Identity=34.9333333333333, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI24644483, Length=375, Percent_Identity=34.9333333333333, Blast_Score=213, Evalue=2e-55, Organism=Drosophila melanogaster, GI24644487, Length=375, Percent_Identity=34.9333333333333, Blast_Score=213, Evalue=3e-55, Organism=Drosophila melanogaster, GI45551833, Length=375, Percent_Identity=34.9333333333333, Blast_Score=213, Evalue=3e-55, Organism=Drosophila melanogaster, GI24644485, Length=375, Percent_Identity=34.9333333333333, Blast_Score=213, Evalue=3e-55, Organism=Drosophila melanogaster, GI281361218, Length=375, Percent_Identity=34.9333333333333, Blast_Score=213, Evalue=3e-55, Organism=Drosophila melanogaster, GI24644481, Length=375, Percent_Identity=34.9333333333333, Blast_Score=213, Evalue=3e-55, Organism=Drosophila melanogaster, GI24645031, Length=367, Percent_Identity=34.3324250681199, Blast_Score=201, Evalue=9e-52, Organism=Drosophila melanogaster, GI17977678, Length=351, Percent_Identity=33.6182336182336, Blast_Score=198, Evalue=8e-51, Organism=Drosophila melanogaster, GI28575014, Length=426, Percent_Identity=30.2816901408451, Blast_Score=194, Evalue=9e-50, Organism=Drosophila melanogaster, GI24666101, Length=373, Percent_Identity=31.9034852546917, Blast_Score=192, Evalue=4e-49, Organism=Drosophila melanogaster, GI24585582, Length=359, Percent_Identity=32.8690807799443, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI28571808, Length=351, Percent_Identity=33.6182336182336, Blast_Score=180, Evalue=1e-45, Organism=Drosophila melanogaster, GI28571809, Length=351, Percent_Identity=33.6182336182336, Blast_Score=180, Evalue=1e-45, Organism=Drosophila melanogaster, GI281365720, Length=315, Percent_Identity=37.1428571428571, Blast_Score=178, Evalue=7e-45, Organism=Drosophila melanogaster, GI24582080, Length=378, Percent_Identity=32.8042328042328, Blast_Score=177, Evalue=2e-44, Organism=Drosophila melanogaster, GI24582078, Length=378, Percent_Identity=32.8042328042328, Blast_Score=177, Evalue=2e-44, Organism=Drosophila melanogaster, GI17136248, Length=378, Percent_Identity=32.8042328042328, Blast_Score=177, Evalue=2e-44, Organism=Drosophila melanogaster, GI24582075, Length=378, Percent_Identity=32.8042328042328, Blast_Score=177, Evalue=2e-44, Organism=Drosophila melanogaster, GI24583281, Length=426, Percent_Identity=27.6995305164319, Blast_Score=175, Evalue=5e-44, Organism=Drosophila melanogaster, GI24583279, Length=374, Percent_Identity=29.4117647058824, Blast_Score=174, Evalue=8e-44, Organism=Drosophila melanogaster, GI24581954, Length=371, Percent_Identity=33.1536388140162, Blast_Score=170, Evalue=1e-42, Organism=Drosophila melanogaster, GI24581952, Length=371, Percent_Identity=33.1536388140162, Blast_Score=170, Evalue=1e-42, Organism=Drosophila melanogaster, GI24581956, Length=371, Percent_Identity=33.1536388140162, Blast_Score=170, Evalue=1e-42, Organism=Drosophila melanogaster, GI17136814, Length=361, Percent_Identity=32.6869806094183, Blast_Score=167, Evalue=1e-41, Organism=Drosophila melanogaster, GI24642822, Length=407, Percent_Identity=29.97542997543, Blast_Score=160, Evalue=1e-39, Organism=Drosophila melanogaster, GI17647335, Length=364, Percent_Identity=31.3186813186813, Blast_Score=160, Evalue=2e-39, Organism=Drosophila melanogaster, GI20130173, Length=430, Percent_Identity=29.0697674418605, Blast_Score=153, Evalue=2e-37, Organism=Drosophila melanogaster, GI21355559, Length=395, Percent_Identity=29.620253164557, Blast_Score=150, Evalue=1e-36, Organism=Drosophila melanogaster, GI19920478, Length=347, Percent_Identity=29.3948126801153, Blast_Score=147, Evalue=1e-35, Organism=Drosophila melanogaster, GI24643725, Length=390, Percent_Identity=27.1794871794872, Blast_Score=146, Evalue=3e-35, Organism=Drosophila melanogaster, GI24668515, Length=343, Percent_Identity=32.6530612244898, Blast_Score=137, Evalue=2e-32, Organism=Drosophila melanogaster, GI18859659, Length=239, Percent_Identity=33.0543933054393, Blast_Score=118, Evalue=1e-26, Organism=Drosophila melanogaster, GI28571338, Length=239, Percent_Identity=33.0543933054393, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI17136666, Length=400, Percent_Identity=24.75, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI24640164, Length=348, Percent_Identity=23.5632183908046, Blast_Score=95, Evalue=8e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RHLB_VIBC3 (A5F3R4)
Other databases:
- EMBL: CP000627 - EMBL: CP001235 - ProteinModelPortal: A5F3R4 - SMR: A5F3R4 - STRING: A5F3R4 - GenomeReviews: CP000627_GR - GenomeReviews: CP001235_GR - KEGG: vco:VC0395_A2697 - eggNOG: COG0513 - HOGENOM: HBG737336 - OMA: SRLNMLF - ProtClustDB: PRK04837 - BioCyc: VCHO345073:VC0395_A2697-MONOMER - HAMAP: MF_00661 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR000629 - InterPro: IPR014014 - SMART: SM00487 - SMART: SM00490
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C
EC number: =3.6.4.13
Molecular weight: Translated: 49072; Mature: 49072
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: PS00039 DEAD_ATP_HELICASE; PS51192 HELICASE_ATP_BIND_1; PS51194 HELICASE_CTER; PS51195 Q_MOTIF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT CCCCCCCHHHHHCCCCCHHHHHCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCC LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHEEHHCCCCHHHHHCCHHHHHHCC GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR CCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCC EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE CHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA HHCCCCEEEEEECCHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEE CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGG EHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCC NRKPQQRRPRAPRPKKEA CCCCHHCCCCCCCCCCCC >Mature Secondary Structure MKKTHITEHKFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT CCCCCCCHHHHHCCCCCHHHHHCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCC LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHEEHHCCCCHHHHHCCHHHHHHCC GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR CCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCC EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILE CHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA HHCCCCEEEEEECCHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEE CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGG EHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCC NRKPQQRRPRAPRPKKEA CCCCHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA