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The map label for this gene is yigB [H]

Identifier: 227080365

GI number: 227080365

Start: 122908

End: 123627

Strand: Direct

Name: yigB [H]

Synonym: VCM66_0129

Alternate gene names: 227080365

Gene position: 122908-123627 (Clockwise)

Preceding gene: 227080364

Following gene: 227080366

Centisome position: 4.25

GC content: 52.08

Gene sequence:

>720_bases
ATGCTGTTTTACCGCCCATTGGCTTCGATTCAAGCACTGACGTTTGATTTGGACGATACCCTTTACGATAACCGTCCGGT
CATCAAACAGGTCGAGGAAAAAGTCACTGAGTGGTTGTTAAGTGAGCATCCCATTACGGCGACGCGTCCTTTGGCTTGGT
GGCTGGCGATGAAGCGTGATATAGCGCGCCGCTTTCCGGAGCAGTGCCATGATGTGAGCCAATGGCGTTATTTACAGGTG
CAGCATGGTTTACTGGAATTAGGCTATGCGCAGCCAGAGGCGGAGCAAGCGGCGAGCGAGACGCTTGAGCAAGTGATGCG
CTGGCGTAATCAAGTCGATGTTCCTGCCGAAACGCATCGGGTGTTGGCTCAGTTAGCGGCTAAAGTGCCGCTGATTGCGA
TCACCAATGGCAATGTCCAGATAGAAAAAATTGGTTTAAGTGGCTATTTCCAAACGGTATTGCGCGCAGGGCCAGACGGC
CGTGCCAAACCGTATCCCGATCTCTTTGCACAAGCAGCACAACAGCTTCAGCTTGAGCCCCGTTCAATCTTGCATGTCGG
GGATCATTTACAAACCGATGTGCTAGGGGCGCGGCAAAATGGTTTTCAAGCCTGCTGGTTTAACGATCAAGGGCAGAGTA
TTCGTCGGCTCGCCAAAGCGAGCGTATTACCCGACGTGGAGATCGAGCGTCTCTCGGAATTACTTCTGATAGTTAACTAG

Upstream 100 bases:

>100_bases
CGACAACGCAAATCTATACCCACCTCGATTTTCAACATCTGGCTCAGGTGTATGACCAAGCGCATCCTCGGGCGCGCAAA
AAGAATAAGGATGACTAACC

Downstream 100 bases:

>100_bases
GTGCATAACATCGAGTCACAAAAATCACATTGCATGGTTATTGAGTATAGTCTGCGGTAACGATTGCATTGCATAATGCC
TAAACATTTCACTGGCTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MLFYRPLASIQALTFDLDDTLYDNRPVIKQVEEKVTEWLLSEHPITATRPLAWWLAMKRDIARRFPEQCHDVSQWRYLQV
QHGLLELGYAQPEAEQAASETLEQVMRWRNQVDVPAETHRVLAQLAAKVPLIAITNGNVQIEKIGLSGYFQTVLRAGPDG
RAKPYPDLFAQAAQQLQLEPRSILHVGDHLQTDVLGARQNGFQACWFNDQGQSIRRLAKASVLPDVEIERLSELLLIVN

Sequences:

>Translated_239_residues
MLFYRPLASIQALTFDLDDTLYDNRPVIKQVEEKVTEWLLSEHPITATRPLAWWLAMKRDIARRFPEQCHDVSQWRYLQV
QHGLLELGYAQPEAEQAASETLEQVMRWRNQVDVPAETHRVLAQLAAKVPLIAITNGNVQIEKIGLSGYFQTVLRAGPDG
RAKPYPDLFAQAAQQLQLEPRSILHVGDHLQTDVLGARQNGFQACWFNDQGQSIRRLAKASVLPDVEIERLSELLLIVN
>Mature_239_residues
MLFYRPLASIQALTFDLDDTLYDNRPVIKQVEEKVTEWLLSEHPITATRPLAWWLAMKRDIARRFPEQCHDVSQWRYLQV
QHGLLELGYAQPEAEQAASETLEQVMRWRNQVDVPAETHRVLAQLAAKVPLIAITNGNVQIEKIGLSGYFQTVLRAGPDG
RAKPYPDLFAQAAQQLQLEPRSILHVGDHLQTDVLGARQNGFQACWFNDQGQSIRRLAKASVLPDVEIERLSELLLIVN

Specific function: Unknown

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjjG [H]

Homologues:

Organism=Escherichia coli, GI2367295, Length=238, Percent_Identity=43.2773109243698, Blast_Score=206, Evalue=9e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 27241; Mature: 27241

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS00761 SPASE_I_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFYRPLASIQALTFDLDDTLYDNRPVIKQVEEKVTEWLLSEHPITATRPLAWWLAMKRD
CCCCCCHHHHHHEEECCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
IARRFPEQCHDVSQWRYLQVQHGLLELGYAQPEAEQAASETLEQVMRWRNQVDVPAETHR
HHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VLAQLAAKVPLIAITNGNVQIEKIGLSGYFQTVLRAGPDGRAKPYPDLFAQAAQQLQLEP
HHHHHHHCCCEEEEECCCEEEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
RSILHVGDHLQTDVLGARQNGFQACWFNDQGQSIRRLAKASVLPDVEIERLSELLLIVN
HHHHHHCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MLFYRPLASIQALTFDLDDTLYDNRPVIKQVEEKVTEWLLSEHPITATRPLAWWLAMKRD
CCCCCCHHHHHHEEECCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
IARRFPEQCHDVSQWRYLQVQHGLLELGYAQPEAEQAASETLEQVMRWRNQVDVPAETHR
HHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VLAQLAAKVPLIAITNGNVQIEKIGLSGYFQTVLRAGPDGRAKPYPDLFAQAAQQLQLEP
HHHHHHHCCCEEEEECCCEEEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
RSILHVGDHLQTDVLGARQNGFQACWFNDQGQSIRRLAKASVLPDVEIERLSELLLIVN
HHHHHHCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254268; 1379743; 9278503; 6379604; 6324092 [H]