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The map label for this gene is yrdD [H]

Identifier: 227080287

GI number: 227080287

Start: 47678

End: 48250

Strand: Direct

Name: yrdD [H]

Synonym: VCM66_0050

Alternate gene names: 227080287

Gene position: 47678-48250 (Clockwise)

Preceding gene: 227080286

Following gene: 227080290

Centisome position: 1.65

GC content: 49.21

Gene sequence:

>573_bases
GTGTCTATGAGTCGTAAAATTGACCCGCAACTGTTTGCCGCTCATGAGCATGCGCTGCAATCTTCCCCTTGTCCGCAATG
TGGCGCAGCATTACAACTGCGCCACGGCAAACATGGTCCTTTTTTAGGTTGCACTGCATACCCAGAGTGTGACTACATCA
AACCTCTGCATCAAAATGATGGGCATATCATCAAAGAACTCGGTGTGCCTTGCCCTGAATGTGGACATGAACTGGTGCTG
CGCCAAGGTCGTTACGGGATGTTTATTGGCTGTAGCCACTACCCGCAGTGCCACCATATCGAGTCGATGGATTCCCCTTC
GCATGAGGAAACATCGCCAGATATCCTTTGCCCGGAATGCGGCAAAGGCCACCTTATCGAACGCAAATCTCGCTTCGGTA
AACTGTTTTATGCGTGTGATGCGTATCCTAAGTGTAAGTTTGCTTTAAATGGTAAACCGATTGCTCAGGCTTGTGCTCGG
TGTGGCTTTACGGTGATGGTGGAAAAGAAAAGTGCAGCAGGCATGCGCTATCAATGTGCTAATCGTCAATGTGGGCATAT
TCAGGAATGCTAG

Upstream 100 bases:

>100_bases
GATGGTGCTGTTCAATGTCCCAGGTAATGAAAATGCTTACACAGTGATGGAAGAGCTGCTGTACAGCAAAGAACAAGGCA
TTTTGCATTAAGCGTGTGAT

Downstream 100 bases:

>100_bases
CTTCATCATGCTCATCGCATACAAAGTTAAAGCCGCGTTAGACGCGGCTTTATTGGATTAGTGAGGTATGGATTAAGGCT
GAATTTCCTTTGCTACGGCG

Product: DNA topoisomerase I-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MSMSRKIDPQLFAAHEHALQSSPCPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQNDGHIIKELGVPCPECGHELVL
RQGRYGMFIGCSHYPQCHHIESMDSPSHEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCKFALNGKPIAQACAR
CGFTVMVEKKSAAGMRYQCANRQCGHIQEC

Sequences:

>Translated_190_residues
MSMSRKIDPQLFAAHEHALQSSPCPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQNDGHIIKELGVPCPECGHELVL
RQGRYGMFIGCSHYPQCHHIESMDSPSHEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCKFALNGKPIAQACAR
CGFTVMVEKKSAAGMRYQCANRQCGHIQEC
>Mature_189_residues
SMSRKIDPQLFAAHEHALQSSPCPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQNDGHIIKELGVPCPECGHELVLR
QGRYGMFIGCSHYPQCHHIESMDSPSHEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCKFALNGKPIAQACARC
GFTVMVEKKSAAGMRYQCANRQCGHIQEC

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=168, Percent_Identity=55.3571428571429, Blast_Score=196, Evalue=7e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 21106; Mature: 20974

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
12.1 %Cys+Met (Translated Protein)
9.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
11.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMSRKIDPQLFAAHEHALQSSPCPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQND
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCC
GHIIKELGVPCPECGHELVLRQGRYGMFIGCSHYPQCHHIESMDSPSHEETSPDILCPEC
CEEHHHHCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
GKGHLIERKSRFGKLFYACDAYPKCKFALNGKPIAQACARCGFTVMVEKKSAAGMRYQCA
CCCCEEHHHHHHCEEEEEECCCCCEEEEECCCHHHHHHHHCCEEEEEECCCCCCCEEECC
NRQCGHIQEC
CCCCCCCCCC
>Mature Secondary Structure 
SMSRKIDPQLFAAHEHALQSSPCPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQND
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCC
GHIIKELGVPCPECGHELVLRQGRYGMFIGCSHYPQCHHIESMDSPSHEETSPDILCPEC
CEEHHHHCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
GKGHLIERKSRFGKLFYACDAYPKCKFALNGKPIAQACARCGFTVMVEKKSAAGMRYQCA
CCCCEEHHHHHHCEEEEEECCCCCEEEEECCCHHHHHHHHCCEEEEEECCCCCCCEEECC
NRQCGHIQEC
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]