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The map label for this gene is 227080284

Identifier: 227080284

GI number: 227080284

Start: 44899

End: 46074

Strand: Direct

Name: 227080284

Synonym: VCM66_0047

Alternate gene names: NA

Gene position: 44899-46074 (Clockwise)

Preceding gene: 227080277

Following gene: 227080285

Centisome position: 1.55

GC content: 49.83

Gene sequence:

>1176_bases
GTGATTTCTCCGAAACCCAGTCATTTTTTCGACCAAGGAAGCAAGGTCATGGCACGATTAACCCGTTATATTGCCTACGC
TTTATTGCCTTTCACTCTGCTCAGTGGACAGGTGACCGCCGATGAGCAAACGCCACTGGCACTCAAACCAAATGCACCGA
CCACCTATACCGTGGTGAAAGGTGACACCTTGTGGGATATTTCCGCTTTGTATCTCGACAGTCCATGGCTGTGGCCAAGA
CTTTGGCAAGTGAACCCAGAAATTGATAACCCACATTTGATCTACCCCGGTGATAAATTGACGCTGTTTTGGCGTGATGG
GCAACCCGTACTCAGTCTAAAACCGATGCGCAAACTGAGCCCGCAAGTGCGTGTGTTGGAAAAACAAGCTGTTCCGACTG
TGCAAGAAGGCTTGGTGCTTCCTTATTTACAATCTGACCGTTTGATGGCGAAAACCGCCTTGCAAGGTAGTGTGCGTGTG
ATTGGCTCCAGCGAGGGTCGTCAATATCTCACCAAGCAAGATCAGCTTTACATCTCCGGTGTACACAGCGAGAAAAAGTG
GGGGATTTATCGCGAGGTAGCACAGTATCAACGTGATGATGAAGTCATGGTGGCGCTGCGTTTAGTGGCGGTGGGTGAAT
TGGCGATGACTGGGGGCAACTTTAGTGGACTAAGCTTGCTAGAGCAAAATCAAGAGATTTTAGCCAATGATATTGCTTTG
CCAGAAGTCGATCTTGAGGAGCGCCAACTGTCGACAACCTTCTATCCGCAGCCAGCGCCTGCAGGGAGTGAAGCTCGCAT
TCTGGGTTCGCTTGAAGGGAGTCAATACGCCGGACAGAATCAAGTGGTGGTGATTGACCAAGGCCGCAGTGATGGCGTCG
CGCAAGGCAGTATGTTTGAACTGTATCAAGCCGCAGTCCAAGTCAAAGCTAAGCAAGATTCGTCTACTTTCCTGTCTGAG
CGTTCGAACACGGACGTACAGTTACCAAGTGTAAAAGTGGGCGCTTTGATGGTGATTCGCCCTTATGAGCGTTTTAGCTT
GGCACTGATTACTAACAGTTCGGCACCGATCAGTGCTGAAGTGCATGCACTGTCTCCGCAGGCAGAGCCTCAAACCGAGC
AGCCAGATGTAGTGCAATTGTCTGAACAAATCGATTTGGTTGATGATGCCAGTTAA

Upstream 100 bases:

>100_bases
TACAGACATATACACTCGAAATGTTGAACTGTGCCGAAACAGCTTAATGCGTGTTGGCTCAATTCTAGACATTTTATGAC
CCAAATGACAGCATCCGGAC

Downstream 100 bases:

>100_bases
TGAAAGATCAGGATTTAGCGGCATGGTTGGCGCTCTGTTTTACTCCTAAACTAGGCAGCAAAACCATTTCTCACCTGCTT
GCGACCCGTTTGCCAGCCCA

Product: hypothetical protein

Products: NA

Alternate protein names: LysM Domain Protein; Cell Wall Degradation; LysM Motif-Containing Protein; Protein Containing LysM Domain; Signal Peptide Protein; LysM Family Cell Wall Degradation Protein; Lysin Domain-Containing Protein; Lysm Domain Protein; Signal Peptide Protein LysM Domain Protein; Secreted Protein

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MISPKPSHFFDQGSKVMARLTRYIAYALLPFTLLSGQVTADEQTPLALKPNAPTTYTVVKGDTLWDISALYLDSPWLWPR
LWQVNPEIDNPHLIYPGDKLTLFWRDGQPVLSLKPMRKLSPQVRVLEKQAVPTVQEGLVLPYLQSDRLMAKTALQGSVRV
IGSSEGRQYLTKQDQLYISGVHSEKKWGIYREVAQYQRDDEVMVALRLVAVGELAMTGGNFSGLSLLEQNQEILANDIAL
PEVDLEERQLSTTFYPQPAPAGSEARILGSLEGSQYAGQNQVVVIDQGRSDGVAQGSMFELYQAAVQVKAKQDSSTFLSE
RSNTDVQLPSVKVGALMVIRPYERFSLALITNSSAPISAEVHALSPQAEPQTEQPDVVQLSEQIDLVDDAS

Sequences:

>Translated_391_residues
MISPKPSHFFDQGSKVMARLTRYIAYALLPFTLLSGQVTADEQTPLALKPNAPTTYTVVKGDTLWDISALYLDSPWLWPR
LWQVNPEIDNPHLIYPGDKLTLFWRDGQPVLSLKPMRKLSPQVRVLEKQAVPTVQEGLVLPYLQSDRLMAKTALQGSVRV
IGSSEGRQYLTKQDQLYISGVHSEKKWGIYREVAQYQRDDEVMVALRLVAVGELAMTGGNFSGLSLLEQNQEILANDIAL
PEVDLEERQLSTTFYPQPAPAGSEARILGSLEGSQYAGQNQVVVIDQGRSDGVAQGSMFELYQAAVQVKAKQDSSTFLSE
RSNTDVQLPSVKVGALMVIRPYERFSLALITNSSAPISAEVHALSPQAEPQTEQPDVVQLSEQIDLVDDAS
>Mature_391_residues
MISPKPSHFFDQGSKVMARLTRYIAYALLPFTLLSGQVTADEQTPLALKPNAPTTYTVVKGDTLWDISALYLDSPWLWPR
LWQVNPEIDNPHLIYPGDKLTLFWRDGQPVLSLKPMRKLSPQVRVLEKQAVPTVQEGLVLPYLQSDRLMAKTALQGSVRV
IGSSEGRQYLTKQDQLYISGVHSEKKWGIYREVAQYQRDDEVMVALRLVAVGELAMTGGNFSGLSLLEQNQEILANDIAL
PEVDLEERQLSTTFYPQPAPAGSEARILGSLEGSQYAGQNQVVVIDQGRSDGVAQGSMFELYQAAVQVKAKQDSSTFLSE
RSNTDVQLPSVKVGALMVIRPYERFSLALITNSSAPISAEVHALSPQAEPQTEQPDVVQLSEQIDLVDDAS

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43256; Mature: 43256

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISPKPSHFFDQGSKVMARLTRYIAYALLPFTLLSGQVTADEQTPLALKPNAPTTYTVVK
CCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEECCCCCEEEEEEE
GDTLWDISALYLDSPWLWPRLWQVNPEIDNPHLIYPGDKLTLFWRDGQPVLSLKPMRKLS
CCCEEEEEEEEECCCCCCCEEEEECCCCCCCEEEECCCEEEEEEECCCCEEEECCHHHCC
PQVRVLEKQAVPTVQEGLVLPYLQSDRLMAKTALQGSVRVIGSSEGRQYLTKQDQLYISG
HHHHHHHHHCCCHHHCCEEEEEECCCCHHHHHHCCCCEEEEECCCCCHHHCCCCEEEEEE
VHSEKKWGIYREVAQYQRDDEVMVALRLVAVGELAMTGGNFSGLSLLEQNQEILANDIAL
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCHHHHHCCHHHHHHCCCC
PEVDLEERQLSTTFYPQPAPAGSEARILGSLEGSQYAGQNQVVVIDQGRSDGVAQGSMFE
CCCCCCHHHHCEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCHHHH
LYQAAVQVKAKQDSSTFLSERSNTDVQLPSVKVGALMVIRPYERFSLALITNSSAPISAE
HHHHHHHEEECCCCHHHHHCCCCCCEECCCEEECEEEEEECCCCEEEEEEECCCCCCEEE
VHALSPQAEPQTEQPDVVQLSEQIDLVDDAS
EEEECCCCCCCCCCCCCEEHHHHCCCCCCCC
>Mature Secondary Structure
MISPKPSHFFDQGSKVMARLTRYIAYALLPFTLLSGQVTADEQTPLALKPNAPTTYTVVK
CCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEECCCCCEEEEEEE
GDTLWDISALYLDSPWLWPRLWQVNPEIDNPHLIYPGDKLTLFWRDGQPVLSLKPMRKLS
CCCEEEEEEEEECCCCCCCEEEEECCCCCCCEEEECCCEEEEEEECCCCEEEECCHHHCC
PQVRVLEKQAVPTVQEGLVLPYLQSDRLMAKTALQGSVRVIGSSEGRQYLTKQDQLYISG
HHHHHHHHHCCCHHHCCEEEEEECCCCHHHHHHCCCCEEEEECCCCCHHHCCCCEEEEEE
VHSEKKWGIYREVAQYQRDDEVMVALRLVAVGELAMTGGNFSGLSLLEQNQEILANDIAL
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCHHHHHCCHHHHHHCCCC
PEVDLEERQLSTTFYPQPAPAGSEARILGSLEGSQYAGQNQVVVIDQGRSDGVAQGSMFE
CCCCCCHHHHCEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCHHHH
LYQAAVQVKAKQDSSTFLSERSNTDVQLPSVKVGALMVIRPYERFSLALITNSSAPISAE
HHHHHHHEEECCCCHHHHHCCCCCCEECCCEEECEEEEEECCCCEEEEEEECCCCCCEEE
VHALSPQAEPQTEQPDVVQLSEQIDLVDDAS
EEEECCCCCCCCCCCCCEEHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA