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The map label for this gene is ydeS [H]

Identifier: 226951028

GI number: 226951028

Start: 4086600

End: 4087172

Strand: Direct

Name: ydeS [H]

Synonym: CLM_4067

Alternate gene names: 226951028

Gene position: 4086600-4087172 (Clockwise)

Preceding gene: 226951025

Following gene: 226951029

Centisome position: 98.35

GC content: 33.86

Gene sequence:

>573_bases
ATGGAGAAAAAATTGGGACGTCCCCGTAGCGAAAAAACTAAGCAGGCCATTCTTTCCGCTGCATATGAGTTATTACTTGA
AAATGGTTTTGGAGCTGTTACAGTTGAAAAAATTGCTGAAAGAGCTGGAGTTAGTAAAGCTACTATTTACAAATGGTGGC
CCAACAAAGCTGCTGTTGTTATAGATGCTTTTTTTGATGCTGCTGTTGTAAGACTTCCAATACCTGATACCGGATCAACT
ATTAATGATATGATAATTCAAGTAAATAATTTAGCAAAATTTTTAATTAGTCGAGAAGGAAAGGTACTTAATGAAATAAT
AGCAGAAGGCCAATTTAATCAAAAGCTAGCTGAAGCCTACCGCGCAATATATTTTAAGCCTCGCAGGCTTGATTCACGAT
ATATTTTAGAACGTGGAATTTCAAGAGGAGAACTAAAGGAAGATTTGGATATAGAGTTAGTTATAGATTTAATTTTTGGC
CCATTATTCTATAGATTATTAATAACGGGGGATATGGTAGACGAGGCTTTTATAAAGGATCTAATAAATTATGCATTTAA
AGGTATAAAATAA

Upstream 100 bases:

>100_bases
AATAGCTTTTTTATCTTTAAAACAAAAAAATATATAGTATAATATACGTATAGTTTATTAAGTATATTATTATAAATTAA
ATACAATGGAGGTAATTATA

Downstream 100 bases:

>100_bases
AAGTTAATATTAATGATAACTTAATGAAATATTAACAGGAAGAAAATTGATTCCACTTATGAGTGGATAAAAGAACTTCA
AATGTTTTCAATAATTTGTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MEKKLGRPRSEKTKQAILSAAYELLLENGFGAVTVEKIAERAGVSKATIYKWWPNKAAVVIDAFFDAAVVRLPIPDTGST
INDMIIQVNNLAKFLISREGKVLNEIIAEGQFNQKLAEAYRAIYFKPRRLDSRYILERGISRGELKEDLDIELVIDLIFG
PLFYRLLITGDMVDEAFIKDLINYAFKGIK

Sequences:

>Translated_190_residues
MEKKLGRPRSEKTKQAILSAAYELLLENGFGAVTVEKIAERAGVSKATIYKWWPNKAAVVIDAFFDAAVVRLPIPDTGST
INDMIIQVNNLAKFLISREGKVLNEIIAEGQFNQKLAEAYRAIYFKPRRLDSRYILERGISRGELKEDLDIELVIDLIFG
PLFYRLLITGDMVDEAFIKDLINYAFKGIK
>Mature_190_residues
MEKKLGRPRSEKTKQAILSAAYELLLENGFGAVTVEKIAERAGVSKATIYKWWPNKAAVVIDAFFDAAVVRLPIPDTGST
INDMIIQVNNLAKFLISREGKVLNEIIAEGQFNQKLAEAYRAIYFKPRRLDSRYILERGISRGELKEDLDIELVIDLIFG
PLFYRLLITGDMVDEAFIKDLINYAFKGIK

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21515; Mature: 21515

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKLGRPRSEKTKQAILSAAYELLLENGFGAVTVEKIAERAGVSKATIYKWWPNKAAVV
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCEEE
IDAFFDAAVVRLPIPDTGSTINDMIIQVNNLAKFLISREGKVLNEIIAEGQFNQKLAEAY
HEEHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHH
RAIYFKPRRLDSRYILERGISRGELKEDLDIELVIDLIFGPLFYRLLITGDMVDEAFIKD
HHHHCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LINYAFKGIK
HHHHHHCCCC
>Mature Secondary Structure
MEKKLGRPRSEKTKQAILSAAYELLLENGFGAVTVEKIAERAGVSKATIYKWWPNKAAVV
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCEEE
IDAFFDAAVVRLPIPDTGSTINDMIIQVNNLAKFLISREGKVLNEIIAEGQFNQKLAEAY
HEEHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHH
RAIYFKPRRLDSRYILERGISRGELKEDLDIELVIDLIFGPLFYRLLITGDMVDEAFIKD
HHHHCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LINYAFKGIK
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]