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The map label for this gene is tetD [H]

Identifier: 226951029

GI number: 226951029

Start: 4087419

End: 4087808

Strand: Direct

Name: tetD [H]

Synonym: CLM_4068

Alternate gene names: 226951029

Gene position: 4087419-4087808 (Clockwise)

Preceding gene: 226951028

Following gene: 226951030

Centisome position: 98.37

GC content: 28.46

Gene sequence:

>390_bases
TTGTCTGTAAAAACTATAGAAAATATGGTTAACTGGATTGAAGATAATATAATGAGGAATCCAACACTAACTGAAATGTC
TAATTATGTTGGGTACTCTCCATTCTATTGTTCATCAAAGTTTCATGAAAATATTGGAATTACTTTTAAACAATATATAT
CAAAACGCAGATTAAGTCTTGCTGCGATAAAAGTAAAGGATACTAAAGTTAGATTCTTAGATATAGCGTTAAAATATGGA
TTTTCATCTCAAGAAGCCTTTACAAGAGCCTTCGTATCCAATTATGGATGCACACCCAATGAATATAGAAAGAAAAGATT
AACTAATATTGAATTATATATGAAACCTAATATATTTCCGGTATCTGATAATGACAATATTAGTGACTAA

Upstream 100 bases:

>100_bases
TTTAAATAAATGAATATGTAGATTAGTGGGATTATCATTGCAAGTCACATCAAGTTTTTATTCGTAGAGAATGATATAAT
ACCTTATAGGGGTGATCTAA

Downstream 100 bases:

>100_bases
TATATTGAAAGGAAATTAAAATGTTTAGTAAATTAGGTAGAAACGATTTATGTTGGTGTGGCAGTGAAAAGAAATATAAA
AAATGTCATTTTAACTTTGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: ORFR [H]

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSVKTIENMVNWIEDNIMRNPTLTEMSNYVGYSPFYCSSKFHENIGITFKQYISKRRLSLAAIKVKDTKVRFLDIALKYG
FSSQEAFTRAFVSNYGCTPNEYRKKRLTNIELYMKPNIFPVSDNDNISD

Sequences:

>Translated_129_residues
MSVKTIENMVNWIEDNIMRNPTLTEMSNYVGYSPFYCSSKFHENIGITFKQYISKRRLSLAAIKVKDTKVRFLDIALKYG
FSSQEAFTRAFVSNYGCTPNEYRKKRLTNIELYMKPNIFPVSDNDNISD
>Mature_128_residues
SVKTIENMVNWIEDNIMRNPTLTEMSNYVGYSPFYCSSKFHENIGITFKQYISKRRLSLAAIKVKDTKVRFLDIALKYGF
SSQEAFTRAFVSNYGCTPNEYRKKRLTNIELYMKPNIFPVSDNDNISD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=112, Percent_Identity=31.25, Blast_Score=73, Evalue=5e-15,
Organism=Escherichia coli, GI1790497, Length=102, Percent_Identity=32.3529411764706, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI1790857, Length=99, Percent_Identity=35.3535353535354, Blast_Score=71, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 15063; Mature: 14932

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKTIENMVNWIEDNIMRNPTLTEMSNYVGYSPFYCSSKFHENIGITFKQYISKRRLSL
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEE
AAIKVKDTKVRFLDIALKYGFSSQEAFTRAFVSNYGCTPNEYRKKRLTNIELYMKPNIFP
EEEEECCCEEEEEEEHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCEEEEEECCCEEE
VSDNDNISD
CCCCCCCCC
>Mature Secondary Structure 
SVKTIENMVNWIEDNIMRNPTLTEMSNYVGYSPFYCSSKFHENIGITFKQYISKRRLSL
CHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEE
AAIKVKDTKVRFLDIALKYGFSSQEAFTRAFVSNYGCTPNEYRKKRLTNIELYMKPNIFP
EEEEECCCEEEEEEEHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCEEEEEECCCEEE
VSDNDNISD
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6094471; 6094472 [H]