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The map label for this gene is ysgA [H]

Identifier: 226950562

GI number: 226950562

Start: 3575687

End: 3576466

Strand: Reverse

Name: ysgA [H]

Synonym: CLM_3539

Alternate gene names: 226950562

Gene position: 3576466-3575687 (Counterclockwise)

Preceding gene: 226950563

Following gene: 226950561

Centisome position: 86.07

GC content: 25.9

Gene sequence:

>780_bases
ATGATTTCTAGTAAAGATAATCAATTAATAAAAGAAGTAAGAAAGTTAAGAGAAAAGAAATATAGAACACAAAATAAAAG
CTTTATTATAGAAGGATTTAGATTTTTTGAAGAAGCATTGAAATCTAATAGTAGTGTAAATAAAGTTTTTATAGAAGAAA
AAAGCTTGAATAAATTAGAAGAACTATACAAAAAATATAATATAAATAATGATATAGAAACTTATGTGGTTAATTATTTT
GTTTTAAAAAGTATAGGTAATACAGAAAATCCTCAGGGGATAGTATCAGTAATAAACTATTTTAAAAAAGAAAAATTAGA
TTTACAAAATGGTTTTTATATTTTAGTAGATAAAGTACAAGATCCAGGTAATATGGGAACTATAATAAGAACTGCTCATG
CGGCAGGAGCCTTAGGAATTATAACAACTAAAGGAACAGTAGATATATATAATGAAAAAACATTAAGGTCTACTATGGGA
TCTATTTTTTATATTCCTATAATAGAAGATGAAAATTTAGAAGTAGTGAAATCGCTACGAAAAAAGGGGTTCAAACTATT
AGTAAGTTCTTTAGATACAAACAGTAATTTTTATGATGTAAATATGAAAGATAATATGATAATTGCGGTAGGAAATGAAG
GAAATGGAATAAGCGAGGTTTTGAAGACTCTTAGTGACATAAAGGTTAAAATCCCTATGCCTGGAGCAGCAGAATCGTTA
AATGTAGCAGTAGCGTGTTCTATAATGACTTTTGAAAGAATAAGACAAATTAATAAATAA

Upstream 100 bases:

>100_bases
TGTAGACTAATAATTAATGCTGATTTTAAAAATATGAATTAATTTATTACTAAAGTTTAATTTATTAGTCTAAATTAAAA
TGAGGTGCATTATATAAGAA

Downstream 100 bases:

>100_bases
GACTGTTGACAAAAAACTAAACAGTATGTAAAATTATGAGAAGGATAAAAACAGAAAATATTAAACTATGATGAAGAGAG
TAAGTTTAAAATATTTTTAA

Product: RNA methyltransferase, TrmH family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MISSKDNQLIKEVRKLREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYVVNYF
VLKSIGNTENPQGIVSVINYFKKEKLDLQNGFYILVDKVQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMG
SIFYIPIIEDENLEVVKSLRKKGFKLLVSSLDTNSNFYDVNMKDNMIIAVGNEGNGISEVLKTLSDIKVKIPMPGAAESL
NVAVACSIMTFERIRQINK

Sequences:

>Translated_259_residues
MISSKDNQLIKEVRKLREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYVVNYF
VLKSIGNTENPQGIVSVINYFKKEKLDLQNGFYILVDKVQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMG
SIFYIPIIEDENLEVVKSLRKKGFKLLVSSLDTNSNFYDVNMKDNMIIAVGNEGNGISEVLKTLSDIKVKIPMPGAAESL
NVAVACSIMTFERIRQINK
>Mature_259_residues
MISSKDNQLIKEVRKLREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYVVNYF
VLKSIGNTENPQGIVSVINYFKKEKLDLQNGFYILVDKVQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMG
SIFYIPIIEDENLEVVKSLRKKGFKLLVSSLDTNSNFYDVNMKDNMIIAVGNEGNGISEVLKTLSDIKVKIPMPGAAESL
NVAVACSIMTFERIRQINK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=303, Percent_Identity=23.4323432343234, Blast_Score=84, Evalue=1e-16,
Organism=Escherichia coli, GI1790623, Length=150, Percent_Identity=29.3333333333333, Blast_Score=82, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24666840, Length=272, Percent_Identity=24.2647058823529, Blast_Score=82, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29360; Mature: 29360

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSKDNQLIKEVRKLREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLE
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHH
ELYKKYNINNDIETYVVNYFVLKSIGNTENPQGIVSVINYFKKEKLDLQNGFYILVDKVQ
HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
DPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKSLR
CCCCCCHHHEEHHCCCCEEEEEECCEEEECCCHHHHHHHCCEEEEEEEECCCHHHHHHHH
KKGFKLLVSSLDTNSNFYDVNMKDNMIIAVGNEGNGISEVLKTLSDIKVKIPMPGAAESL
HHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCEEEECCCCCCCCC
NVAVACSIMTFERIRQINK
CEEEEEHHHHHHHHHHCCC
>Mature Secondary Structure
MISSKDNQLIKEVRKLREKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLE
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHH
ELYKKYNINNDIETYVVNYFVLKSIGNTENPQGIVSVINYFKKEKLDLQNGFYILVDKVQ
HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
DPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENLEVVKSLR
CCCCCCHHHEEHHCCCCEEEEEECCEEEECCCHHHHHHHCCEEEEEEEECCCHHHHHHHH
KKGFKLLVSSLDTNSNFYDVNMKDNMIIAVGNEGNGISEVLKTLSDIKVKIPMPGAAESL
HHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCEEEECCCCCCCCC
NVAVACSIMTFERIRQINK
CEEEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]