| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is pheT [H]
Identifier: 226950560
GI number: 226950560
Start: 3571778
End: 3574159
Strand: Reverse
Name: pheT [H]
Synonym: CLM_3537
Alternate gene names: 226950560
Gene position: 3574159-3571778 (Counterclockwise)
Preceding gene: 226950561
Following gene: 226950559
Centisome position: 86.01
GC content: 30.27
Gene sequence:
>2382_bases ATGAAAGTTCCAGTTAAATGGTTAAATGATTATATAGATATAGATATTTCTCCAAAGGAATTAGGGGATAGACTTACGTT ATCAGGTTCAAAGGTAGAAGAAGTTGTTACTACAGGTGATGAAATACAAAATGTAGTTACAGGGAAAATAGTGGAAATAA GAAAACATCTTGATGCGGATAAACTTTCCATTTGTCAAGTAGACATAGGTAAGGAAGAAAATATTCAAATAGTTACAGCT GCTACAAATATGAAAGAAATGGATATAATACCTGTAGCTCTTCATGGATCTACATTACATGGTGGATTAAAGATTAAAAA AGGTAAATTAAGAGGAGAAGTATCTAATGGTATGTTCTGTTCTGAAGAAGAACTAGGTCTAGCAGGAGATGAACCTGTAT ATGGACTTATGATTTTGGATCAGGATACACCTATAGGAGAGGATATAAAAAAGGTATTAAAAATGGAAAGCTCTATTATA GAGTTTGAAATTACATCTAATAGACCAGATTGTTTAAGTGTAATAGGTATAGCAAGGGAAACTGCTGCTACTTTAAACAA AAAATATACTATTCCGGTGGTAGAATTTTCTCCCAAATGCAGTGAAAGTATAGAAGACTCTTTAAAAGTAGAAGTAAAAG ATGCACTTTGTAGAAGATATATGGCAAGAGGTATTAAAAATGTTAAAGTAGAACAATCACCGGGTTGGATGCAAGAAAGA TTATTAGAGGCAGGAGTTAGACCTATAAACAATATAGTAGATATAACAAACTTTGTAATGTTAGAATTAGGTCAACCAAT GCATGCTTTTGATAGGAAAGAAATAAAAACCAATACTATAGTGGTGGAAAGAGCAAAAGAGGGAGAAAAGTTTACTACAT TAGATGAAACAGAAAGAGAATTGGATGTAGATATACTTAACATAAAAGATGGAGATAGAACTGTAGCTATTGCTGGTATA ATGGGTGGTTTAAACTCAGAAGTAAAAGAAGATACGAAGGAAATAATATTAGAATGTGCTAATTTTGATGGGACTAATAT AAGAATATCTTCTAAAAAATTGGGCTTAAGAACAGAGGCCTCTTCTAGGTTTGAGAAAGATTTAGATCCTAATTTAGTGG AATTAGCTATGGATAGAGCTTGTAAACTAATTCAAGAACTAGGTGCAGGAGAGGTAATGGAAGGTTCTGTAGATGTATAT GAAAATAAATTAGAGCCTCATATGTTAGAAGTAGACAGCAATTGGATAAATAAATTTTTAGGTACCAATATATCCAAAGA AGAAATGCAAGAATTTTTAGATAGATTAGATCTTAACACAGAAATAAAGGGAGAAATTTTAGAAATACATGTGCCAACTT TTAGATGCGATTTAAATATAAAGGAAGATATAGCAGAAGAAATAGCAAGAATATATGGATACAATAATATTCCGATAACT ACAATAAAAAGTGTTACTATGCAAGCAGGAAAAAATGAAAAGCAACATTTAGATGACAAGGTTATAGAAACACTAATGGC TAGTGGATTAAATCAATCTATAAGTTATTCCTTCGTAAGTCCAAAAGTATTTGAAAAGATTAATTTAAAAGAAGATAGTA ATTTAAGAAAAGTAGTTAAGATAAAAAATCCTCTAGGAGAAGATTTTAGTATAATGAGAACTACTACAATACCTTCTATG GTGGAGGCTTTAAGTAGAAATTACTCAAGAAACAATGATTATGCTTCTCTGTTTGAAATCGGAAAGATATATATTCCAAA GGAAGATCCTACAGAACTTCCAGATGAAAAGAATATTCTTACTTTAGGTTTATATGGTGATGTGGATTACTTTAATTTAA AAGGTATAGTAGAAAATATACTAGATGGATTAGGAATAGATAATTATAAATTAAAAAGACAAGAGGAAAATCCTACTTTT CATCCTGGAAGAACAGCAGAACTATATATAAAGAAAGATTATGTAGGGATATTAGGAGAAATACATCCAGATGTACAAGA TAATTATGATATAGAAGAAAGATGCTATGTAGCAGAACTAAATTTAGATGTTTTATATAAACATTCTAATGTTAAAAAGG AGTATAGTCAGTTACCAAAATTCCCAGCAGTAACTAGAGACATAGCAGTAATTGTGGATGATACAGTGCTAGTACAAGAA ATAGAAAATATAATTAAGAATGGTGGAGGAAACATACTTGAAAGTATTCACCTATTTGATGTTTATAAAGGAAAGCAAAT ACCAGAAGGAAAGAAAAGTATAGCATATTCTATAGTGTATAGAAATGCTCAAAGAACCCTTAAAGATTCAGAAGTAAATA AAGTTCATGATAAAATAGTAAGAACTTTAGAACATAAATTAGGAGCACAACTTAGAGATTAA
Upstream 100 bases:
>100_bases TAGACATACACTTCTAGTTTAGTTGTATAAAATAGAAGTTTAAATAAATATTTTGGAAATAAAATATTTACTGATTATAT TATATGAGGAGGTATAACAA
Downstream 100 bases:
>100_bases AACTAAAATCCTGTTTTATAAATGTGTATTTTATGATAGAATTATTATAGGAGATTATGACAAATAGTATATATTTATAT AAGGTTTAATCATTAGAACA
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 793; Mature: 793
Protein sequence:
>793_residues MKVPVKWLNDYIDIDISPKELGDRLTLSGSKVEEVVTTGDEIQNVVTGKIVEIRKHLDADKLSICQVDIGKEENIQIVTA ATNMKEMDIIPVALHGSTLHGGLKIKKGKLRGEVSNGMFCSEEELGLAGDEPVYGLMILDQDTPIGEDIKKVLKMESSII EFEITSNRPDCLSVIGIARETAATLNKKYTIPVVEFSPKCSESIEDSLKVEVKDALCRRYMARGIKNVKVEQSPGWMQER LLEAGVRPINNIVDITNFVMLELGQPMHAFDRKEIKTNTIVVERAKEGEKFTTLDETERELDVDILNIKDGDRTVAIAGI MGGLNSEVKEDTKEIILECANFDGTNIRISSKKLGLRTEASSRFEKDLDPNLVELAMDRACKLIQELGAGEVMEGSVDVY ENKLEPHMLEVDSNWINKFLGTNISKEEMQEFLDRLDLNTEIKGEILEIHVPTFRCDLNIKEDIAEEIARIYGYNNIPIT TIKSVTMQAGKNEKQHLDDKVIETLMASGLNQSISYSFVSPKVFEKINLKEDSNLRKVVKIKNPLGEDFSIMRTTTIPSM VEALSRNYSRNNDYASLFEIGKIYIPKEDPTELPDEKNILTLGLYGDVDYFNLKGIVENILDGLGIDNYKLKRQEENPTF HPGRTAELYIKKDYVGILGEIHPDVQDNYDIEERCYVAELNLDVLYKHSNVKKEYSQLPKFPAVTRDIAVIVDDTVLVQE IENIIKNGGGNILESIHLFDVYKGKQIPEGKKSIAYSIVYRNAQRTLKDSEVNKVHDKIVRTLEHKLGAQLRD
Sequences:
>Translated_793_residues MKVPVKWLNDYIDIDISPKELGDRLTLSGSKVEEVVTTGDEIQNVVTGKIVEIRKHLDADKLSICQVDIGKEENIQIVTA ATNMKEMDIIPVALHGSTLHGGLKIKKGKLRGEVSNGMFCSEEELGLAGDEPVYGLMILDQDTPIGEDIKKVLKMESSII EFEITSNRPDCLSVIGIARETAATLNKKYTIPVVEFSPKCSESIEDSLKVEVKDALCRRYMARGIKNVKVEQSPGWMQER LLEAGVRPINNIVDITNFVMLELGQPMHAFDRKEIKTNTIVVERAKEGEKFTTLDETERELDVDILNIKDGDRTVAIAGI MGGLNSEVKEDTKEIILECANFDGTNIRISSKKLGLRTEASSRFEKDLDPNLVELAMDRACKLIQELGAGEVMEGSVDVY ENKLEPHMLEVDSNWINKFLGTNISKEEMQEFLDRLDLNTEIKGEILEIHVPTFRCDLNIKEDIAEEIARIYGYNNIPIT TIKSVTMQAGKNEKQHLDDKVIETLMASGLNQSISYSFVSPKVFEKINLKEDSNLRKVVKIKNPLGEDFSIMRTTTIPSM VEALSRNYSRNNDYASLFEIGKIYIPKEDPTELPDEKNILTLGLYGDVDYFNLKGIVENILDGLGIDNYKLKRQEENPTF HPGRTAELYIKKDYVGILGEIHPDVQDNYDIEERCYVAELNLDVLYKHSNVKKEYSQLPKFPAVTRDIAVIVDDTVLVQE IENIIKNGGGNILESIHLFDVYKGKQIPEGKKSIAYSIVYRNAQRTLKDSEVNKVHDKIVRTLEHKLGAQLRD >Mature_793_residues MKVPVKWLNDYIDIDISPKELGDRLTLSGSKVEEVVTTGDEIQNVVTGKIVEIRKHLDADKLSICQVDIGKEENIQIVTA ATNMKEMDIIPVALHGSTLHGGLKIKKGKLRGEVSNGMFCSEEELGLAGDEPVYGLMILDQDTPIGEDIKKVLKMESSII EFEITSNRPDCLSVIGIARETAATLNKKYTIPVVEFSPKCSESIEDSLKVEVKDALCRRYMARGIKNVKVEQSPGWMQER LLEAGVRPINNIVDITNFVMLELGQPMHAFDRKEIKTNTIVVERAKEGEKFTTLDETERELDVDILNIKDGDRTVAIAGI MGGLNSEVKEDTKEIILECANFDGTNIRISSKKLGLRTEASSRFEKDLDPNLVELAMDRACKLIQELGAGEVMEGSVDVY ENKLEPHMLEVDSNWINKFLGTNISKEEMQEFLDRLDLNTEIKGEILEIHVPTFRCDLNIKEDIAEEIARIYGYNNIPIT TIKSVTMQAGKNEKQHLDDKVIETLMASGLNQSISYSFVSPKVFEKINLKEDSNLRKVVKIKNPLGEDFSIMRTTTIPSM VEALSRNYSRNNDYASLFEIGKIYIPKEDPTELPDEKNILTLGLYGDVDYFNLKGIVENILDGLGIDNYKLKRQEENPTF HPGRTAELYIKKDYVGILGEIHPDVQDNYDIEERCYVAELNLDVLYKHSNVKKEYSQLPKFPAVTRDIAVIVDDTVLVQE IENIIKNGGGNILESIHLFDVYKGKQIPEGKKSIAYSIVYRNAQRTLKDSEVNKVHDKIVRTLEHKLGAQLRD
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI124028525, Length=381, Percent_Identity=25.4593175853018, Blast_Score=104, Evalue=3e-22, Organism=Escherichia coli, GI1788006, Length=814, Percent_Identity=35.1351351351351, Blast_Score=456, Evalue=1e-129, Organism=Caenorhabditis elegans, GI17533403, Length=285, Percent_Identity=25.9649122807018, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI21355211, Length=388, Percent_Identity=22.680412371134, Blast_Score=96, Evalue=1e-19,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR002319 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01409 tRNA-synt_2d; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 89432; Mature: 89432
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVPVKWLNDYIDIDISPKELGDRLTLSGSKVEEVVTTGDEIQNVVTGKIVEIRKHLDAD CCCCHHHHCCEEEECCCHHHHCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC KLSICQVDIGKEENIQIVTAATNMKEMDIIPVALHGSTLHGGLKIKKGKLRGEVSNGMFC CEEEEEEECCCCCCEEEEEEECCCCCCEEEEEEEECCEEECCEEEECCCCCEECCCCEEE SEEELGLAGDEPVYGLMILDQDTPIGEDIKKVLKMESSIIEFEITSNRPDCLSVIGIARE CCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH TAATLNKKYTIPVVEFSPKCSESIEDSLKVEVKDALCRRYMARGIKNVKVEQSPGWMQER HHHHCCCCEEEEEEEECCCHHHHHHHHHEEHHHHHHHHHHHHCCCCCCEEECCCCHHHHH LLEAGVRPINNIVDITNFVMLELGQPMHAFDRKEIKTNTIVVERAKEGEKFTTLDETERE HHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHH LDVDILNIKDGDRTVAIAGIMGGLNSEVKEDTKEIILECANFDGTNIRISSKKLGLRTEA CCEEEEEECCCCCEEEEEEHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCH SSRFEKDLDPNLVELAMDRACKLIQELGAGEVMEGSVDVYENKLEPHMLEVDSNWINKFL HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCCCCCEEEEECHHHHHHHH GTNISKEEMQEFLDRLDLNTEIKGEILEIHVPTFRCDLNIKEDIAEEIARIYGYNNIPIT CCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECEEEECCCCHHHHHHHHHHHHCCCCCCCH TIKSVTMQAGKNEKQHLDDKVIETLMASGLNQSISYSFVSPKVFEKINLKEDSNLRKVVK HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHCCCCCCCCCHHHHE IKNPLGEDFSIMRTTTIPSMVEALSRNYSRNNDYASLFEIGKIYIPKEDPTELPDEKNIL ECCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCCEE TLGLYGDVDYFNLKGIVENILDGLGIDNYKLKRQEENPTFHPGRTAELYIKKDYVGILGE EEEEECCCCEEHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEEEEECCHHHHHHC IHPDVQDNYDIEERCYVAELNLDVLYKHSNVKKEYSQLPKFPAVTRDIAVIVDDTVLVQE CCCCCCCCCCHHHCEEEEEECEEEEEECCCHHHHHHHCCCCCCCCCCEEEEECCHHHHHH IENIIKNGGGNILESIHLFDVYKGKQIPEGKKSIAYSIVYRNAQRTLKDSEVNKVHDKIV HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHEEEEEECCHHHHHHHHHHHHHHHHHH RTLEHKLGAQLRD HHHHHHHCCCCCC >Mature Secondary Structure MKVPVKWLNDYIDIDISPKELGDRLTLSGSKVEEVVTTGDEIQNVVTGKIVEIRKHLDAD CCCCHHHHCCEEEECCCHHHHCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC KLSICQVDIGKEENIQIVTAATNMKEMDIIPVALHGSTLHGGLKIKKGKLRGEVSNGMFC CEEEEEEECCCCCCEEEEEEECCCCCCEEEEEEEECCEEECCEEEECCCCCEECCCCEEE SEEELGLAGDEPVYGLMILDQDTPIGEDIKKVLKMESSIIEFEITSNRPDCLSVIGIARE CCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH TAATLNKKYTIPVVEFSPKCSESIEDSLKVEVKDALCRRYMARGIKNVKVEQSPGWMQER HHHHCCCCEEEEEEEECCCHHHHHHHHHEEHHHHHHHHHHHHCCCCCCEEECCCCHHHHH LLEAGVRPINNIVDITNFVMLELGQPMHAFDRKEIKTNTIVVERAKEGEKFTTLDETERE HHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHH LDVDILNIKDGDRTVAIAGIMGGLNSEVKEDTKEIILECANFDGTNIRISSKKLGLRTEA CCEEEEEECCCCCEEEEEEHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCH SSRFEKDLDPNLVELAMDRACKLIQELGAGEVMEGSVDVYENKLEPHMLEVDSNWINKFL HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCCCCCEEEEECHHHHHHHH GTNISKEEMQEFLDRLDLNTEIKGEILEIHVPTFRCDLNIKEDIAEEIARIYGYNNIPIT CCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECEEEECCCCHHHHHHHHHHHHCCCCCCCH TIKSVTMQAGKNEKQHLDDKVIETLMASGLNQSISYSFVSPKVFEKINLKEDSNLRKVVK HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHCCCCCCCCCHHHHE IKNPLGEDFSIMRTTTIPSMVEALSRNYSRNNDYASLFEIGKIYIPKEDPTELPDEKNIL ECCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCCEE TLGLYGDVDYFNLKGIVENILDGLGIDNYKLKRQEENPTFHPGRTAELYIKKDYVGILGE EEEEECCCCEEHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEEEEECCHHHHHHC IHPDVQDNYDIEERCYVAELNLDVLYKHSNVKKEYSQLPKFPAVTRDIAVIVDDTVLVQE CCCCCCCCCCHHHCEEEEEECEEEEEECCCHHHHHHHCCCCCCCCCCEEEEECCHHHHHH IENIIKNGGGNILESIHLFDVYKGKQIPEGKKSIAYSIVYRNAQRTLKDSEVNKVHDKIV HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHEEEEEECCHHHHHHHHHHHHHHHHHH RTLEHKLGAQLRD HHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12552129 [H]