| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is amiC [H]
Identifier: 226950540
GI number: 226950540
Start: 3540418
End: 3543309
Strand: Reverse
Name: amiC [H]
Synonym: CLM_3516
Alternate gene names: 226950540
Gene position: 3543309-3540418 (Counterclockwise)
Preceding gene: 226950541
Following gene: 226950539
Centisome position: 85.27
GC content: 30.01
Gene sequence:
>2892_bases ATGAATGGAAAAAAATTTTTACTAAAAGAAAGGAGGGGAAATATGTATATGGGGGAAATAGAAAATATAGTTAAAAAGAT TCCATTAATACTTTTAATTAGTATTATTGTAACTTTTGTACCTTCATTTAAAGTACATGCTAGTAGCACTACACATATAA TGGGACAACCTCAGTTAACACAGGAACAAGCATTAAATTATTTTAAGACCAGAAACAGTGAAAAAAGTGACCAAGCTACA AAAGAATTTATTTCCATAGTTTGGCAGGAAGCTAATTTAGAAGGAATAAGAGCTGATGTAGTTTTTATTCAAATAATGAA GGAAACAAATTTTTTGAAATTTACAGGGGATGTAAAAGAATGTCAAAATAATTTTGCAGGTATTGGTGCTACAGGTGGTG GTGTACCAGGTGCTTATTTTAAAGATACAAAAACAGGAGTAAGAGCCGTTGTTCAACATCTAAAAGCTTATTGTAGTACT GAGGGATTAAAAAATCCTTGTGTAGATCCACGATTTACATATGTTCAAAGAGGAATAAGTCCCTATGTTGAGTGGTTAGG TATAGGGGAAAATCCTAATTATCCAGATAAAGGATGGGCTGCGGATAATAATTATGGTAAGAGTATAGTTGAAATGATGC ACAGTGCAAAGTATCTGGCAAATGAAGGTGATTCGCAAGGAAATATAACTACTTCAAAGGCTACTATTAATAATTTAGAA GTAAGTTTAGATGGAAATAATGTAGTAACTAATGAATTAGAACCGGGAAAAGCATATAACATAAAAGCTTATGGGAATAG TTCTAATGGAGTACTATATGAATATTGGATAAAAGACTTATCAATTAATTCATGGATAAAGCTAAGAGATTATAGTACAA CCAATGAAGTTAAATGGACACCAAATAAATCAGGGAAATATCTAATAGGAGTACATGTTAAAGATAGATATAGTAAAGAA AGATTAGATAATTTTAAGTATGTAGAATATAATGTAGCATCCCTTAAAAAAGCTACTATTAGTAGTTTAGAAGTAAGCTT AGATGGAAATAATGTAGTGAATAATGAATTACAACTAGGCAAGATATATAATATAAAAGCTTATGGCAGTAGCTCTAATG GCGTATTGTATGAATATTGGATAAAAGACTTATCAAAGAATTCATGGATGAAGTTAAGAGATTATAGTACAAGTACTCAA GTCACATGGACACCAAATAAATCAGGAAAGTATCTATTAGGAGTACATGTTAAAGATAGGTATAGTGAAGAAAGATTAGA TAACTTTAAGTATGTAGAATACAATGTAGCATCACCTAAAAAGGCTACTGTTAATAGCTTAGAAGTAAGCTTAGATGGAA ATAAGGTAGTAGCTAATGAACTAGATCCAGGAAAAGCATATAACATAAAAGCTTATGGGAATAGTTCTAATGGAGTATTA TATGAATATTGGATAAAAGACTTATCGATTAATTCGTGGATAAAGTTAAAAGATTATAGTACAAGTACTCAAGTTACATG GACACCAAATAAGTCAGGAAAATATTTGATAGGAGTACACGTAAAAGATAAGTATAGTACACAAAAATTAGATAATTTTA AGTATGTGGAATATAATGTAGCATCACCTAAAAAGGCTACTATCAATAGTTTAGAAGTAAGTCTAGATGGAGGTAAAGTA GTAAATAATGAACTACAAGCAGGTGAAACATATAATATAAAAGCTTATGGTAGTAGTTCTAATGGAGTATTGTATGAATA TTGGATAAAAGACTTATCAATTAATTCGTGGATAAAGTTAAAAGATTATAGTACAAGTACTCAAGTTACATGGACACCAA ATAAGTCAGGAAAATATTTGATAGGAGTACACGTAAAAGATAAGTATAGTACACAAAAATTAGATAATTTTAAGTATGTA GAATATAATGTGAAACTATCTAAAAAAGCAGTTATTAGTAACTTGGAAGTAAGCCTAAATGGAAAGATAGTAACAAACAA TCAATTAAATTCAGGAAAAACATATAGTATAAAAACTTATGCCGAAAGTCTTAATGGAGTATTGTATGAATATTGGATAA AAGATTTATCAATTAATTCATGGATAAAGTTAAAAGATTATAGTACAAGTACTCAGATCACATGGACACCAAATAAAGCA GGAAAATATCTAATAGGAGTGCATGTAAAAGATAAATATAGTAATGAAAGATTAGACAATTATAAATATGTAGAATATAG TGTTCAAGGTAGTTTAATAAAAACTATAGTTTTAGATGCAGGTCATGGAGGCAGGGACTCAGGTGCAGTATCTTCTAGAG CAACTGGAAATATACACGAAGCAGATATAGTTCAGAAGATTACCATCAAGTTAGGAAACCTTCTTAAAGCCAAAGGATAT AATGTTATTTATACTAGGGACAAAGTAGATAATTATAATTATCCTTCAATAACACAAAATTTAGAAGATAGAATAAATGT AGCTAATAGTATAAAAGCTGATTTATTCGTGAGTATACATGCTGACTCTGCTGATAGTTCATCAGCTCATGGATATGGTG CTCACTATAGTAGCTATAGACCTAGATTAGATAATTCAGGTGTATATATGGAGGATGATGTGTATTATGATAGAACCCCT TGTGATGCAGCATTAAAGAGCAAAGTGTTATCACAACTTATAGTAAATGAAATGGCTTCTTTGGGAACTACAAACAGGGG AATATATGATCATAATTTATATGTTACAAGAAATGCCTTAATGCCTTCTGTACTCGTAGAATGTGGATTTGTTTCCAATG ATGCAGAGGTTAGATGGCTAAATACTGATTCTAATCAAAATAAAATAGCTCAAAAACTTTACAATGCGGTAACAAAATTA TTCAGTATATAG
Upstream 100 bases:
>100_bases TTAATTACATATAATTGATGGTTTTTTATATTTTAGATATTATATAAATAAAATTATAAATAAAACATATGATATAATAA TTTACAAAGGAGGTGAATTT
Downstream 100 bases:
>100_bases TTAAAAAACCGTTGACAGGTCCTTTGTCAACGGTTTTTTAATTTTACTCATAAACTTTAAATGATATTTTCTATTTATTG TATATATGATAAAATAAAGA
Product: putative N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 963; Mature: 963
Protein sequence:
>963_residues MNGKKFLLKERRGNMYMGEIENIVKKIPLILLISIIVTFVPSFKVHASSTTHIMGQPQLTQEQALNYFKTRNSEKSDQAT KEFISIVWQEANLEGIRADVVFIQIMKETNFLKFTGDVKECQNNFAGIGATGGGVPGAYFKDTKTGVRAVVQHLKAYCST EGLKNPCVDPRFTYVQRGISPYVEWLGIGENPNYPDKGWAADNNYGKSIVEMMHSAKYLANEGDSQGNITTSKATINNLE VSLDGNNVVTNELEPGKAYNIKAYGNSSNGVLYEYWIKDLSINSWIKLRDYSTTNEVKWTPNKSGKYLIGVHVKDRYSKE RLDNFKYVEYNVASLKKATISSLEVSLDGNNVVNNELQLGKIYNIKAYGSSSNGVLYEYWIKDLSKNSWMKLRDYSTSTQ VTWTPNKSGKYLLGVHVKDRYSEERLDNFKYVEYNVASPKKATVNSLEVSLDGNKVVANELDPGKAYNIKAYGNSSNGVL YEYWIKDLSINSWIKLKDYSTSTQVTWTPNKSGKYLIGVHVKDKYSTQKLDNFKYVEYNVASPKKATINSLEVSLDGGKV VNNELQAGETYNIKAYGSSSNGVLYEYWIKDLSINSWIKLKDYSTSTQVTWTPNKSGKYLIGVHVKDKYSTQKLDNFKYV EYNVKLSKKAVISNLEVSLNGKIVTNNQLNSGKTYSIKTYAESLNGVLYEYWIKDLSINSWIKLKDYSTSTQITWTPNKA GKYLIGVHVKDKYSNERLDNYKYVEYSVQGSLIKTIVLDAGHGGRDSGAVSSRATGNIHEADIVQKITIKLGNLLKAKGY NVIYTRDKVDNYNYPSITQNLEDRINVANSIKADLFVSIHADSADSSSAHGYGAHYSSYRPRLDNSGVYMEDDVYYDRTP CDAALKSKVLSQLIVNEMASLGTTNRGIYDHNLYVTRNALMPSVLVECGFVSNDAEVRWLNTDSNQNKIAQKLYNAVTKL FSI
Sequences:
>Translated_963_residues MNGKKFLLKERRGNMYMGEIENIVKKIPLILLISIIVTFVPSFKVHASSTTHIMGQPQLTQEQALNYFKTRNSEKSDQAT KEFISIVWQEANLEGIRADVVFIQIMKETNFLKFTGDVKECQNNFAGIGATGGGVPGAYFKDTKTGVRAVVQHLKAYCST EGLKNPCVDPRFTYVQRGISPYVEWLGIGENPNYPDKGWAADNNYGKSIVEMMHSAKYLANEGDSQGNITTSKATINNLE VSLDGNNVVTNELEPGKAYNIKAYGNSSNGVLYEYWIKDLSINSWIKLRDYSTTNEVKWTPNKSGKYLIGVHVKDRYSKE RLDNFKYVEYNVASLKKATISSLEVSLDGNNVVNNELQLGKIYNIKAYGSSSNGVLYEYWIKDLSKNSWMKLRDYSTSTQ VTWTPNKSGKYLLGVHVKDRYSEERLDNFKYVEYNVASPKKATVNSLEVSLDGNKVVANELDPGKAYNIKAYGNSSNGVL YEYWIKDLSINSWIKLKDYSTSTQVTWTPNKSGKYLIGVHVKDKYSTQKLDNFKYVEYNVASPKKATINSLEVSLDGGKV VNNELQAGETYNIKAYGSSSNGVLYEYWIKDLSINSWIKLKDYSTSTQVTWTPNKSGKYLIGVHVKDKYSTQKLDNFKYV EYNVKLSKKAVISNLEVSLNGKIVTNNQLNSGKTYSIKTYAESLNGVLYEYWIKDLSINSWIKLKDYSTSTQITWTPNKA GKYLIGVHVKDKYSNERLDNYKYVEYSVQGSLIKTIVLDAGHGGRDSGAVSSRATGNIHEADIVQKITIKLGNLLKAKGY NVIYTRDKVDNYNYPSITQNLEDRINVANSIKADLFVSIHADSADSSSAHGYGAHYSSYRPRLDNSGVYMEDDVYYDRTP CDAALKSKVLSQLIVNEMASLGTTNRGIYDHNLYVTRNALMPSVLVECGFVSNDAEVRWLNTDSNQNKIAQKLYNAVTKL FSI >Mature_963_residues MNGKKFLLKERRGNMYMGEIENIVKKIPLILLISIIVTFVPSFKVHASSTTHIMGQPQLTQEQALNYFKTRNSEKSDQAT KEFISIVWQEANLEGIRADVVFIQIMKETNFLKFTGDVKECQNNFAGIGATGGGVPGAYFKDTKTGVRAVVQHLKAYCST EGLKNPCVDPRFTYVQRGISPYVEWLGIGENPNYPDKGWAADNNYGKSIVEMMHSAKYLANEGDSQGNITTSKATINNLE VSLDGNNVVTNELEPGKAYNIKAYGNSSNGVLYEYWIKDLSINSWIKLRDYSTTNEVKWTPNKSGKYLIGVHVKDRYSKE RLDNFKYVEYNVASLKKATISSLEVSLDGNNVVNNELQLGKIYNIKAYGSSSNGVLYEYWIKDLSKNSWMKLRDYSTSTQ VTWTPNKSGKYLLGVHVKDRYSEERLDNFKYVEYNVASPKKATVNSLEVSLDGNKVVANELDPGKAYNIKAYGNSSNGVL YEYWIKDLSINSWIKLKDYSTSTQVTWTPNKSGKYLIGVHVKDKYSTQKLDNFKYVEYNVASPKKATINSLEVSLDGGKV VNNELQAGETYNIKAYGSSSNGVLYEYWIKDLSINSWIKLKDYSTSTQVTWTPNKSGKYLIGVHVKDKYSTQKLDNFKYV EYNVKLSKKAVISNLEVSLNGKIVTNNQLNSGKTYSIKTYAESLNGVLYEYWIKDLSINSWIKLKDYSTSTQITWTPNKA GKYLIGVHVKDKYSNERLDNYKYVEYSVQGSLIKTIVLDAGHGGRDSGAVSSRATGNIHEADIVQKITIKLGNLLKAKGY NVIYTRDKVDNYNYPSITQNLEDRINVANSIKADLFVSIHADSADSSSAHGYGAHYSSYRPRLDNSGVYMEDDVYYDRTP CDAALKSKVLSQLIVNEMASLGTTNRGIYDHNLYVTRNALMPSVLVECGFVSNDAEVRWLNTDSNQNKIAQKLYNAVTKL FSI
Specific function: Cell-wall hydrolase involved in septum cleavage during cell division [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]
Homologues:
Organism=Escherichia coli, GI87082163, Length=230, Percent_Identity=29.1304347826087, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1788776, Length=230, Percent_Identity=26.9565217391304, Blast_Score=66, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021731 - InterPro: IPR002508 [H]
Pfam domain/function: PF01520 Amidase_3; PF11741 AMIN [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 108457; Mature: 108457
Theoretical pI: Translated: 9.39; Mature: 9.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGKKFLLKERRGNMYMGEIENIVKKIPLILLISIIVTFVPSFKVHASSTTHIMGQPQLT CCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCC QEQALNYFKTRNSEKSDQATKEFISIVWQEANLEGIRADVVFIQIMKETNFLKFTGDVKE HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEECCHHH CQNNFAGIGATGGGVPGAYFKDTKTGVRAVVQHLKAYCSTEGLKNPCVDPRFTYVQRGIS HHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC PYVEWLGIGENPNYPDKGWAADNNYGKSIVEMMHSAKYLANEGDSQGNITTSKATINNLE HHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECEEEEEEEE VSLDGNNVVTNELEPGKAYNIKAYGNSSNGVLYEYWIKDLSINSWIKLRDYSTTNEVKWT EEECCCEEEECCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEECCCCCCEEEC PNKSGKYLIGVHVKDRYSKERLDNFKYVEYNVASLKKATISSLEVSLDGNNVVNNELQLG CCCCCCEEEEEEECCHHCHHHHCCCEEEEEEHHHHHHHEEEEEEEEECCCCEECCCEEEC KIYNIKAYGSSSNGVLYEYWIKDLSKNSWMKLRDYSTSTQVTWTPNKSGKYLLGVHVKDR EEEEEEEECCCCCCEEEEEEHHHCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEEHHC YSEERLDNFKYVEYNVASPKKATVNSLEVSLDGNKVVANELDPGKAYNIKAYGNSSNGVL CCHHHHCCEEEEEEECCCCCCCEEEEEEEEECCCEEEECCCCCCCEEEEEEECCCCCCEE YEYWIKDLSINSWIKLKDYSTSTQVTWTPNKSGKYLIGVHVKDKYSTQKLDNFKYVEYNV EEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEEEECCCCHHHCCCEEEEEEEC ASPKKATINSLEVSLDGGKVVNNELQAGETYNIKAYGSSSNGVLYEYWIKDLSINSWIKL CCCCCCEEEEEEEEECCCEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCEEEE KDYSTSTQVTWTPNKSGKYLIGVHVKDKYSTQKLDNFKYVEYNVKLSKKAVISNLEVSLN EECCCCEEEEECCCCCCCEEEEEEEECCCCHHHCCCEEEEEEEEEECHHHHEEEEEEEEC GKIVTNNQLNSGKTYSIKTYAESLNGVLYEYWIKDLSINSWIKLKDYSTSTQITWTPNKA CEEEECCCCCCCCEEEEEEHHHHHCCCEEEEHHHHCCCCCEEEEEECCCCEEEEECCCCC GKYLIGVHVKDKYSNERLDNYKYVEYSVQGSLIKTIVLDAGHGGRDSGAVSSRATGNIHE CCEEEEEEEECCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCH ADIVQKITIKLGNLLKAKGYNVIYTRDKVDNYNYPSITQNLEDRINVANSIKADLFVSIH HHHHHHHHHHHHCEEECCCCEEEEEECCCCCCCCCHHHHCHHHHHHHHCCCCEEEEEEEE ADSADSSSAHGYGAHYSSYRPRLDNSGVYMEDDVYYDRTPCDAALKSKVLSQLIVNEMAS CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCHHHHHHHHHHHHHHHHHHHH LGTTNRGIYDHNLYVTRNALMPSVLVECGFVSNDAEVRWLNTDSNQNKIAQKLYNAVTKL CCCCCCCEEECEEEEEECHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH FSI HCC >Mature Secondary Structure MNGKKFLLKERRGNMYMGEIENIVKKIPLILLISIIVTFVPSFKVHASSTTHIMGQPQLT CCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCC QEQALNYFKTRNSEKSDQATKEFISIVWQEANLEGIRADVVFIQIMKETNFLKFTGDVKE HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEECCHHH CQNNFAGIGATGGGVPGAYFKDTKTGVRAVVQHLKAYCSTEGLKNPCVDPRFTYVQRGIS HHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCC PYVEWLGIGENPNYPDKGWAADNNYGKSIVEMMHSAKYLANEGDSQGNITTSKATINNLE HHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECEEEEEEEE VSLDGNNVVTNELEPGKAYNIKAYGNSSNGVLYEYWIKDLSINSWIKLRDYSTTNEVKWT EEECCCEEEECCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEECCCCCCEEEC PNKSGKYLIGVHVKDRYSKERLDNFKYVEYNVASLKKATISSLEVSLDGNNVVNNELQLG CCCCCCEEEEEEECCHHCHHHHCCCEEEEEEHHHHHHHEEEEEEEEECCCCEECCCEEEC KIYNIKAYGSSSNGVLYEYWIKDLSKNSWMKLRDYSTSTQVTWTPNKSGKYLLGVHVKDR EEEEEEEECCCCCCEEEEEEHHHCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEEHHC YSEERLDNFKYVEYNVASPKKATVNSLEVSLDGNKVVANELDPGKAYNIKAYGNSSNGVL CCHHHHCCEEEEEEECCCCCCCEEEEEEEEECCCEEEECCCCCCCEEEEEEECCCCCCEE YEYWIKDLSINSWIKLKDYSTSTQVTWTPNKSGKYLIGVHVKDKYSTQKLDNFKYVEYNV EEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEEEECCCCHHHCCCEEEEEEEC ASPKKATINSLEVSLDGGKVVNNELQAGETYNIKAYGSSSNGVLYEYWIKDLSINSWIKL CCCCCCEEEEEEEEECCCEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCEEEE KDYSTSTQVTWTPNKSGKYLIGVHVKDKYSTQKLDNFKYVEYNVKLSKKAVISNLEVSLN EECCCCEEEEECCCCCCCEEEEEEEECCCCHHHCCCEEEEEEEEEECHHHHEEEEEEEEC GKIVTNNQLNSGKTYSIKTYAESLNGVLYEYWIKDLSINSWIKLKDYSTSTQITWTPNKA CEEEECCCCCCCCEEEEEEHHHHHCCCEEEEHHHHCCCCCEEEEEECCCCEEEEECCCCC GKYLIGVHVKDKYSNERLDNYKYVEYSVQGSLIKTIVLDAGHGGRDSGAVSSRATGNIHE CCEEEEEEEECCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCH ADIVQKITIKLGNLLKAKGYNVIYTRDKVDNYNYPSITQNLEDRINVANSIKADLFVSIH HHHHHHHHHHHHCEEECCCCEEEEEECCCCCCCCCHHHHCHHHHHHHHCCCCEEEEEEEE ADSADSSSAHGYGAHYSSYRPRLDNSGVYMEDDVYYDRTPCDAALKSKVLSQLIVNEMAS CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCHHHHHHHHHHHHHHHHHHHH LGTTNRGIYDHNLYVTRNALMPSVLVECGFVSNDAEVRWLNTDSNQNKIAQKLYNAVTKL CCCCCCCEEECEEEEEECHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH FSI HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]