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The map label for this gene is 226950521

Identifier: 226950521

GI number: 226950521

Start: 3516558

End: 3517532

Strand: Direct

Name: 226950521

Synonym: CLM_3497

Alternate gene names: NA

Gene position: 3516558-3517532 (Clockwise)

Preceding gene: 226950519

Following gene: 226950547

Centisome position: 84.63

GC content: 26.87

Gene sequence:

>975_bases
ATGAACAAAAAAGTTATTTCTTGTGTTTTAGCTTCTTCTTTTTTATTATGCTCTTGTAATTTAAGTACTTCCAACCAAAA
ATTTAATGCAAGTTTAGATGAAAGTAATAAAAAAGTAGAAGAAAATAATATAAAAGATAAATCCAAAGATACTGGAACTC
AGATTAAAAATAATGTTAATGATGAAAACAATATTAAGAATGATAAAGATGAGAAAAAGGATACTACTACTAGCAGTAAT
ATAAATAAATTTAAAGATGAATCTAATATGTCCTCTAAAGAAAAAGATTGGTTCTTTAAGCCTAGTAAAAATAATGAACC
TGCTACTATACCAGAGGATATGGAAAATGATCTTAATAAATATTCTGGATATTTTCTTGGTGATACCTCTAAAAAGCATT
TATATCTTACCTTTGATGAAGGCTATGAAAATGGTTATACTGGGAAAATATTAGATACATTAAAAGAAAATAAAGTTAAA
GCAGCCTTCTTTGTAACTGCACCTTATATAAAACAGAACAAAGACTTAATAAAAAGAATGATCGATGAAGGTCATTTAGT
TTGTAATCATTCTGATCATCATCCTTCTATGGCCTCTGCAGCCTTAAAGGGCAAAGAAAGCTTTAAAAAAGAATTTACTG
TAGTTGAAGATTTATATAAAGATATTACAAAAAAAGATATGCCTAAATTTTTTAGACCACCTATGGGTAAGTACAGTGAA
CTATCCTTAAAATATACAGAAGACTTGGGATATAAAAGTATATTCTGGAGTTTTGCTTATCATGACTGGGATAGAAATAA
ACAACCTTCTCCTGAAAAAGGTAAAGAAAAAATATTAAATGGAGTTCATAATGGAAGTATTATTCTTCTTCATGCAGTTT
CCAAAACAAATACTGAAATATTAGATTCTGTACTAAAAGAACTAAAAAATAATGGATATGAGTTTAAAACTTTAGAGGAT
TTACCTAAAAAATAA

Upstream 100 bases:

>100_bases
AAATTTTTTCGATATTATCTTTAAATGCATTCATATTACTCACCACAATCTTTATTATTCTATAAAAAGTATAACATAGA
AAAGGATAGGTGATTTACTT

Downstream 100 bases:

>100_bases
TCAATTAAAATATAAGTTTTTATAATAAAAAGCTATGAGTTTAACAATATAATATTGCAAATTCGTAGCTTTTTAATTTA
AAAATAAATATTAATAGCTT

Product: polysaccharide deacetylase family protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MNKKVISCVLASSFLLCSCNLSTSNQKFNASLDESNKKVEENNIKDKSKDTGTQIKNNVNDENNIKNDKDEKKDTTTSSN
INKFKDESNMSSKEKDWFFKPSKNNEPATIPEDMENDLNKYSGYFLGDTSKKHLYLTFDEGYENGYTGKILDTLKENKVK
AAFFVTAPYIKQNKDLIKRMIDEGHLVCNHSDHHPSMASAALKGKESFKKEFTVVEDLYKDITKKDMPKFFRPPMGKYSE
LSLKYTEDLGYKSIFWSFAYHDWDRNKQPSPEKGKEKILNGVHNGSIILLHAVSKTNTEILDSVLKELKNNGYEFKTLED
LPKK

Sequences:

>Translated_324_residues
MNKKVISCVLASSFLLCSCNLSTSNQKFNASLDESNKKVEENNIKDKSKDTGTQIKNNVNDENNIKNDKDEKKDTTTSSN
INKFKDESNMSSKEKDWFFKPSKNNEPATIPEDMENDLNKYSGYFLGDTSKKHLYLTFDEGYENGYTGKILDTLKENKVK
AAFFVTAPYIKQNKDLIKRMIDEGHLVCNHSDHHPSMASAALKGKESFKKEFTVVEDLYKDITKKDMPKFFRPPMGKYSE
LSLKYTEDLGYKSIFWSFAYHDWDRNKQPSPEKGKEKILNGVHNGSIILLHAVSKTNTEILDSVLKELKNNGYEFKTLED
LPKK
>Mature_324_residues
MNKKVISCVLASSFLLCSCNLSTSNQKFNASLDESNKKVEENNIKDKSKDTGTQIKNNVNDENNIKNDKDEKKDTTTSSN
INKFKDESNMSSKEKDWFFKPSKNNEPATIPEDMENDLNKYSGYFLGDTSKKHLYLTFDEGYENGYTGKILDTLKENKVK
AAFFVTAPYIKQNKDLIKRMIDEGHLVCNHSDHHPSMASAALKGKESFKKEFTVVEDLYKDITKKDMPKFFRPPMGKYSE
LSLKYTEDLGYKSIFWSFAYHDWDRNKQPSPEKGKEKILNGVHNGSIILLHAVSKTNTEILDSVLKELKNNGYEFKTLED
LPKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014235 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 37172; Mature: 37172

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKVISCVLASSFLLCSCNLSTSNQKFNASLDESNKKVEENNIKDKSKDTGTQIKNNVN
CCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCC
DENNIKNDKDEKKDTTTSSNINKFKDESNMSSKEKDWFFKPSKNNEPATIPEDMENDLNK
CCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHH
YSGYFLGDTSKKHLYLTFDEGYENGYTGKILDTLKENKVKAAFFVTAPYIKQNKDLIKRM
HCCEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCEEEEEEEECCHHHCCHHHHHHH
IDEGHLVCNHSDHHPSMASAALKGKESFKKEFTVVEDLYKDITKKDMPKFFRPPMGKYSE
HHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCC
LSLKYTEDLGYKSIFWSFAYHDWDRNKQPSPEKGKEKILNGVHNGSIILLHAVSKTNTEI
EEEEEHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHH
LDSVLKELKNNGYEFKTLEDLPKK
HHHHHHHHHHCCCEEEEHHCCCCC
>Mature Secondary Structure
MNKKVISCVLASSFLLCSCNLSTSNQKFNASLDESNKKVEENNIKDKSKDTGTQIKNNVN
CCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCC
DENNIKNDKDEKKDTTTSSNINKFKDESNMSSKEKDWFFKPSKNNEPATIPEDMENDLNK
CCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHH
YSGYFLGDTSKKHLYLTFDEGYENGYTGKILDTLKENKVKAAFFVTAPYIKQNKDLIKRM
HCCEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCEEEEEEEECCHHHCCHHHHHHH
IDEGHLVCNHSDHHPSMASAALKGKESFKKEFTVVEDLYKDITKKDMPKFFRPPMGKYSE
HHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCC
LSLKYTEDLGYKSIFWSFAYHDWDRNKQPSPEKGKEKILNGVHNGSIILLHAVSKTNTEI
EEEEEHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHH
LDSVLKELKNNGYEFKTLEDLPKK
HHHHHHHHHHCCCEEEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8473853 [H]