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The map label for this gene is 226950519

Identifier: 226950519

GI number: 226950519

Start: 3514304

End: 3514474

Strand: Direct

Name: 226950519

Synonym: CLM_3495

Alternate gene names: NA

Gene position: 3514304-3514474 (Clockwise)

Preceding gene: 226950512

Following gene: 226950521

Centisome position: 84.57

GC content: 23.39

Gene sequence:

>171_bases
TTGTCCATATTTAATACTTTTATTCCTATTTTTCCTAAATGTAAAGCAAAAGGTTTTTATGTCCATTATTCTAGAACACA
TTATTATAATGTTAAAATACTAAAACACCTTTCTGCAGAAAAAGCAATGCTATGTAAAATAGATGAAGAAGTTATAAAAA
CTTCTAAATAA

Upstream 100 bases:

>100_bases
ACTATCCCCCCCAATTTTATGTTTTTTTATAAATCATCAATATTACTATTCTACATATGGAATAATTTTCCTTCTTTTTC
TTTTATATCTCTTTTTATTA

Downstream 100 bases:

>100_bases
TTTCTTACTACATACTTTTTAGATAATCCTAAATGAAAAATATTTATTGGTGGCGGTATAGAAATACATACATGATCATA
AAATGAATTTGATATATTAA

Product: spermidine synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 56; Mature: 55

Protein sequence:

>56_residues
MSIFNTFIPIFPKCKAKGFYVHYSRTHYYNVKILKHLSAEKAMLCKIDEEVIKTSK

Sequences:

>Translated_56_residues
MSIFNTFIPIFPKCKAKGFYVHYSRTHYYNVKILKHLSAEKAMLCKIDEEVIKTSK
>Mature_55_residues
SIFNTFIPIFPKCKAKGFYVHYSRTHYYNVKILKHLSAEKAMLCKIDEEVIKTSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 6612; Mature: 6481

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIFNTFIPIFPKCKAKGFYVHYSRTHYYNVKILKHLSAEKAMLCKIDEEVIKTSK
CCCCCCCCCCCCCCCCCEEEEEECCCEEEEEHHEECCCCCCEEEEECCHHHHCCCC
>Mature Secondary Structure 
SIFNTFIPIFPKCKAKGFYVHYSRTHYYNVKILKHLSAEKAMLCKIDEEVIKTSK
CCCCCCCCCCCCCCCCEEEEEECCCEEEEEHHEECCCCCCEEEEECCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA