| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is pbpA [H]
Identifier: 226950512
GI number: 226950512
Start: 3508071
End: 3510566
Strand: Direct
Name: pbpA [H]
Synonym: CLM_3488
Alternate gene names: 226950512
Gene position: 3508071-3510566 (Clockwise)
Preceding gene: 226950510
Following gene: 226950519
Centisome position: 84.42
GC content: 30.97
Gene sequence:
>2496_bases ATGGGAAAAAAGAAAAAAAAGCGCAAATCTAGCGCCTTTAAAATAATACTTAATGTCTTTTTAAGTATTTTCTTAGTAGC TGGAGTAGCCTTTGGTGGAATTGTGTTTGCGATGATAAAAACAGCTCCTCCACTAAATGTACAGCAAGTTCTCACTTTTG ATGAGCCCTCTATACTTTATGATGATAAAGGTCAATATATGGATAAAGTTATAACTAACGAACAAAGAATTGTAGTTGAT TATAAAAATGTACCTCAAAATTTAAAAAATGCATTTGTAAGTATAGAAGATGAAAGATTTTATAAACATCATGGAGTTGA CATAAAAAGATTTACTGGTGTTATATTAATTAATGTGACTAATAAAATAAAAAGGAGTTCTAAACTTCAGGGAGCTTCTA CTCTAACTCAACAGTTAATAAAAAATACAGTTTTATCCTCTGAAGTTTCTATTAAAAGAAAAGTTCAGGAAATGTACTTA TCTATACAACTAGAAAAAGAGATATCGAAGGATGAAATTTTAGGTGCCTATATGAATAGTATATTTTTAGGCGGAAATGC TTTAGGGGTAGAGGCAGCCTCAAAACAGTATTTTAATAAAAGTGTAAAAGATCTATCTTTAATAGAATGTGCTTTTATTG CTGGAGTACCTCAAAGTCCATCAGTTTACTATCCCTATTCATCTGTTGCTAAGAAAAACCCTTCTATTTATTTAAATAGA ACAAAAACTGTTTTATATAAAATGTTAGACAATGGCTATATTACTCAAAATGATTATAATAAAGCTTTAAAGGATTTAGA TAGTAAAAAGCTAGCCTTTGCTAAACCATCTGCCCCTAACAATAAGTTAGCCTATGAATGGTTCTCTATTCCTGCTATTG AGCAAGTAAAAAAAGATTTAAAGACTCAATATAAATATGATGACAAACAAATTCATAACCTTTTAGTTAATGGTGGTTTA AAAATATATACTACTATGAATAAAAATTTACAAGATAAGACTCAAAATACAATAAATGATGCTTATTATTTAAATTCTTA TAAAAGTAATGGTATGATATATCCTCAAGCCTCTGCTGTAATAATGGACTATCATAATGGTGAGGTAAAAACTATAATTG GAGGTAGAGGCGACCAACCTGCTAGATCTTATAACAGAGCAGCTTCTTATAACTATCTAAGACCTGCCGGCTCTAGTATT AAACCTCTTACAGTATATAGTGCTGCTATAGATAGTAAAAAAGCCACTTCTGCTACTGGATTTGAAGATTCTCCAATTCC AGATAATATAGGACGTAAATATAGTTCTGGAGCACCTTATAATCCTAAAAATAGCCCTAATATTTATTCTGGATATGTAA ATGTAAGAGAGGCTTTAAAGCGCTCTATAAACGTAATAGCCGTAAAACTTGTAGATAGAATAGGACTCAATACTAGTATA CAATATGCTGAAAAATTTGGAATTCCTATAGACCAACATGATAGGAGTAGTATTGCATCTCTAGCTTTAGGAGAATTACA TAAAGGTACTAATCCTTTAATAATGGCTCAGGCCTACGGTGTATTTGGCAATAATGGAACTTATACAGAAGCAAAATTAT ATACAAAAGTTGTAGACAGATCTGGTAAGGTTATTTTAGAACCTAAAACTAATACAAAAAAGGTTCTTTCACCAGAAGCT GCTTTTATAACTTACGATATGCTTCAAGGACCTGTAAGTGAAGGAGGTACCGGAACTCAAGCTAATTTTGGTAATATGGA GGTTAGAGGTAAGACTGGTACATCTAGTGATATGAAAAACTTATGGTTCTGCGGATTAACTCCTTATTATTCCGCAGCGG TTTGGATAGGTAATGATAATTCTTCTACAGTAGATGGAGTATATAGTAGCACTGCTGCTAGACTTTGGGGAGATATTGTG AAAGAATTCCATGTTAATCTTCCCTATAAACAAGTTCAAAAACCAGCTAGTGTTATAACTGCTAACGTAGATAGAATTTC TGGTAAACTTCCAACTCAGCTATCTTATAGAGATCCTAGAGGAAGTACAGTATATAATGAATTTTTTATAAATGGAACTA TTCCAACAGAATATGATGATATACATGTAGAAGCTCAAATAAATAAGTTAACTGGTAAATTAGCAAGTAAATTTACCCCT TCATTCCTTGTAGAATCTAGAGTATTCTTAAGAAGAGATTACTCTCCTGGTATAGAACTTTTAGATCAACAATGGGTTCT CCCTTATTCTATAGATGAAGGAGGAAGCTTACCACCTACTGAAGAAAAAAATAACTCTAATACTAGAGATAAAAATAAAG ATAAGGATAAGAATAAAAATAAGAATAAAAATAAGAATAAAGATAAGAATCCTTCACAGGATAAACCTAATAATAATGAT AACAATAGTAACAATAATAACGACAATAACAACAATGCTAAACCTCCTGAAAATGATTCAAATCAAAATCAAGAAGACAA AAAGAACAAACGATAA
Upstream 100 bases:
>100_bases ATAATTAGGATTTTTTCTATTTATTCATAAGTAATTCAATATGTGTTATAATATTAAAAATAATGTTTTATTTTACCCTA ACTAAGGAGGACAAATATAT
Downstream 100 bases:
>100_bases AAAGAATAAAAACTCCTTTTTGGGAGTTTTTATTCTTTTGTTTTAGGATTAAATATTAAAGCCATTATATATCCGAATAT AATAGCCGCAGTTATTCCTC
Product: penicillin-binding protein, 1A family
Products: NA
Alternate protein names: PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 831; Mature: 830
Protein sequence:
>831_residues MGKKKKKRKSSAFKIILNVFLSIFLVAGVAFGGIVFAMIKTAPPLNVQQVLTFDEPSILYDDKGQYMDKVITNEQRIVVD YKNVPQNLKNAFVSIEDERFYKHHGVDIKRFTGVILINVTNKIKRSSKLQGASTLTQQLIKNTVLSSEVSIKRKVQEMYL SIQLEKEISKDEILGAYMNSIFLGGNALGVEAASKQYFNKSVKDLSLIECAFIAGVPQSPSVYYPYSSVAKKNPSIYLNR TKTVLYKMLDNGYITQNDYNKALKDLDSKKLAFAKPSAPNNKLAYEWFSIPAIEQVKKDLKTQYKYDDKQIHNLLVNGGL KIYTTMNKNLQDKTQNTINDAYYLNSYKSNGMIYPQASAVIMDYHNGEVKTIIGGRGDQPARSYNRAASYNYLRPAGSSI KPLTVYSAAIDSKKATSATGFEDSPIPDNIGRKYSSGAPYNPKNSPNIYSGYVNVREALKRSINVIAVKLVDRIGLNTSI QYAEKFGIPIDQHDRSSIASLALGELHKGTNPLIMAQAYGVFGNNGTYTEAKLYTKVVDRSGKVILEPKTNTKKVLSPEA AFITYDMLQGPVSEGGTGTQANFGNMEVRGKTGTSSDMKNLWFCGLTPYYSAAVWIGNDNSSTVDGVYSSTAARLWGDIV KEFHVNLPYKQVQKPASVITANVDRISGKLPTQLSYRDPRGSTVYNEFFINGTIPTEYDDIHVEAQINKLTGKLASKFTP SFLVESRVFLRRDYSPGIELLDQQWVLPYSIDEGGSLPPTEEKNNSNTRDKNKDKDKNKNKNKNKNKDKNPSQDKPNNND NNSNNNNDNNNNAKPPENDSNQNQEDKKNKR
Sequences:
>Translated_831_residues MGKKKKKRKSSAFKIILNVFLSIFLVAGVAFGGIVFAMIKTAPPLNVQQVLTFDEPSILYDDKGQYMDKVITNEQRIVVD YKNVPQNLKNAFVSIEDERFYKHHGVDIKRFTGVILINVTNKIKRSSKLQGASTLTQQLIKNTVLSSEVSIKRKVQEMYL SIQLEKEISKDEILGAYMNSIFLGGNALGVEAASKQYFNKSVKDLSLIECAFIAGVPQSPSVYYPYSSVAKKNPSIYLNR TKTVLYKMLDNGYITQNDYNKALKDLDSKKLAFAKPSAPNNKLAYEWFSIPAIEQVKKDLKTQYKYDDKQIHNLLVNGGL KIYTTMNKNLQDKTQNTINDAYYLNSYKSNGMIYPQASAVIMDYHNGEVKTIIGGRGDQPARSYNRAASYNYLRPAGSSI KPLTVYSAAIDSKKATSATGFEDSPIPDNIGRKYSSGAPYNPKNSPNIYSGYVNVREALKRSINVIAVKLVDRIGLNTSI QYAEKFGIPIDQHDRSSIASLALGELHKGTNPLIMAQAYGVFGNNGTYTEAKLYTKVVDRSGKVILEPKTNTKKVLSPEA AFITYDMLQGPVSEGGTGTQANFGNMEVRGKTGTSSDMKNLWFCGLTPYYSAAVWIGNDNSSTVDGVYSSTAARLWGDIV KEFHVNLPYKQVQKPASVITANVDRISGKLPTQLSYRDPRGSTVYNEFFINGTIPTEYDDIHVEAQINKLTGKLASKFTP SFLVESRVFLRRDYSPGIELLDQQWVLPYSIDEGGSLPPTEEKNNSNTRDKNKDKDKNKNKNKNKNKDKNPSQDKPNNND NNSNNNNDNNNNAKPPENDSNQNQEDKKNKR >Mature_830_residues GKKKKKRKSSAFKIILNVFLSIFLVAGVAFGGIVFAMIKTAPPLNVQQVLTFDEPSILYDDKGQYMDKVITNEQRIVVDY KNVPQNLKNAFVSIEDERFYKHHGVDIKRFTGVILINVTNKIKRSSKLQGASTLTQQLIKNTVLSSEVSIKRKVQEMYLS IQLEKEISKDEILGAYMNSIFLGGNALGVEAASKQYFNKSVKDLSLIECAFIAGVPQSPSVYYPYSSVAKKNPSIYLNRT KTVLYKMLDNGYITQNDYNKALKDLDSKKLAFAKPSAPNNKLAYEWFSIPAIEQVKKDLKTQYKYDDKQIHNLLVNGGLK IYTTMNKNLQDKTQNTINDAYYLNSYKSNGMIYPQASAVIMDYHNGEVKTIIGGRGDQPARSYNRAASYNYLRPAGSSIK PLTVYSAAIDSKKATSATGFEDSPIPDNIGRKYSSGAPYNPKNSPNIYSGYVNVREALKRSINVIAVKLVDRIGLNTSIQ YAEKFGIPIDQHDRSSIASLALGELHKGTNPLIMAQAYGVFGNNGTYTEAKLYTKVVDRSGKVILEPKTNTKKVLSPEAA FITYDMLQGPVSEGGTGTQANFGNMEVRGKTGTSSDMKNLWFCGLTPYYSAAVWIGNDNSSTVDGVYSSTAARLWGDIVK EFHVNLPYKQVQKPASVITANVDRISGKLPTQLSYRDPRGSTVYNEFFINGTIPTEYDDIHVEAQINKLTGKLASKFTPS FLVESRVFLRRDYSPGIELLDQQWVLPYSIDEGGSLPPTEEKNNSNTRDKNKDKDKNKNKNKNKNKDKNPSQDKPNNNDN NSNNNNDNNNNAKPPENDSNQNQEDKKNKR
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass type II membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=561, Percent_Identity=30.6595365418895, Blast_Score=202, Evalue=6e-53, Organism=Escherichia coli, GI87082258, Length=336, Percent_Identity=32.1428571428571, Blast_Score=161, Evalue=1e-40, Organism=Escherichia coli, GI1788867, Length=566, Percent_Identity=23.8515901060071, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1789601, Length=163, Percent_Identity=33.1288343558282, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.1.129; 3.4.-.- [C]
Molecular weight: Translated: 92796; Mature: 92665
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKKKKKRKSSAFKIILNVFLSIFLVAGVAFGGIVFAMIKTAPPLNVQQVLTFDEPSILY CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCEEE DDKGQYMDKVITNEQRIVVDYKNVPQNLKNAFVSIEDERFYKHHGVDIKRFTGVILINVT CCCHHHHHHHHCCCCEEEEECCCCCHHHHHHEEEECHHHHHHHCCCCHHHCCCEEEEEEC NKIKRSSKLQGASTLTQQLIKNTVLSSEVSIKRKVQEMYLSIQLEKEISKDEILGAYMNS HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCHHHHHHHHHHH IFLGGNALGVEAASKQYFNKSVKDLSLIECAFIAGVPQSPSVYYPYSSVAKKNPSIYLNR EEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHCCCCCEEEEH TKTVLYKMLDNGYITQNDYNKALKDLDSKKLAFAKPSAPNNKLAYEWFSIPAIEQVKKDL HHHHHHHHHCCCEEECCHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHH KTQYKYDDKQIHNLLVNGGLKIYTTMNKNLQDKTQNTINDAYYLNSYKSNGMIYPQASAV HHHCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCHHHEEECCCCCCEEEECCCEE IMDYHNGEVKTIIGGRGDQPARSYNRAASYNYLRPAGSSIKPLTVYSAAIDSKKATSATG EEEECCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCC FEDSPIPDNIGRKYSSGAPYNPKNSPNIYSGYVNVREALKRSINVIAVKLVDRIGLNTSI CCCCCCCHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHEEEEEHHHHHCCCCCH QYAEKFGIPIDQHDRSSIASLALGELHKGTNPLIMAQAYGVFGNNGTYTEAKLYTKVVDR HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHCC SGKVILEPKTNTKKVLSPEAAFITYDMLQGPVSEGGTGTQANFGNMEVRGKTGTSSDMKN CCCEEECCCCCCCHHCCCCHHEEEHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC LWFCGLTPYYSAAVWIGNDNSSTVDGVYSSTAARLWGDIVKEFHVNLPYKQVQKPASVIT EEEECCCHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHEE ANVDRISGKLPTQLSYRDPRGSTVYNEFFINGTIPTEYDDIHVEAQINKLTGKLASKFTP ECHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHCCH SFLVESRVFLRRDYSPGIELLDQQWVLPYSIDEGGSLPPTEEKNNSNTRDKNKDKDKNKN HHHHHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC KNKNKNKDKNPSQDKPNNNDNNSNNNNDNNNNAKPPENDSNQNQEDKKNKR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC >Mature Secondary Structure GKKKKKRKSSAFKIILNVFLSIFLVAGVAFGGIVFAMIKTAPPLNVQQVLTFDEPSILY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCEEE DDKGQYMDKVITNEQRIVVDYKNVPQNLKNAFVSIEDERFYKHHGVDIKRFTGVILINVT CCCHHHHHHHHCCCCEEEEECCCCCHHHHHHEEEECHHHHHHHCCCCHHHCCCEEEEEEC NKIKRSSKLQGASTLTQQLIKNTVLSSEVSIKRKVQEMYLSIQLEKEISKDEILGAYMNS HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCHHHHHHHHHHH IFLGGNALGVEAASKQYFNKSVKDLSLIECAFIAGVPQSPSVYYPYSSVAKKNPSIYLNR EEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHCCCCCEEEEH TKTVLYKMLDNGYITQNDYNKALKDLDSKKLAFAKPSAPNNKLAYEWFSIPAIEQVKKDL HHHHHHHHHCCCEEECCHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHH KTQYKYDDKQIHNLLVNGGLKIYTTMNKNLQDKTQNTINDAYYLNSYKSNGMIYPQASAV HHHCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCHHHEEECCCCCCEEEECCCEE IMDYHNGEVKTIIGGRGDQPARSYNRAASYNYLRPAGSSIKPLTVYSAAIDSKKATSATG EEEECCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCC FEDSPIPDNIGRKYSSGAPYNPKNSPNIYSGYVNVREALKRSINVIAVKLVDRIGLNTSI CCCCCCCHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHEEEEEHHHHHCCCCCH QYAEKFGIPIDQHDRSSIASLALGELHKGTNPLIMAQAYGVFGNNGTYTEAKLYTKVVDR HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHCC SGKVILEPKTNTKKVLSPEAAFITYDMLQGPVSEGGTGTQANFGNMEVRGKTGTSSDMKN CCCEEECCCCCCCHHCCCCHHEEEHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC LWFCGLTPYYSAAVWIGNDNSSTVDGVYSSTAARLWGDIVKEFHVNLPYKQVQKPASVIT EEEECCCHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHEE ANVDRISGKLPTQLSYRDPRGSTVYNEFFINGTIPTEYDDIHVEAQINKLTGKLASKFTP ECHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHCCH SFLVESRVFLRRDYSPGIELLDQQWVLPYSIDEGGSLPPTEEKNNSNTRDKNKDKDKNKN HHHHHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC KNKNKNKDKNPSQDKPNNNDNNSNNNNDNNNNAKPPENDSNQNQEDKKNKR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA