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The map label for this gene is yebA [C]

Identifier: 226950418

GI number: 226950418

Start: 3424272

End: 3425057

Strand: Reverse

Name: yebA [C]

Synonym: CLM_3390

Alternate gene names: 226950418

Gene position: 3425057-3424272 (Counterclockwise)

Preceding gene: 226950419

Following gene: 226950417

Centisome position: 82.43

GC content: 25.57

Gene sequence:

>786_bases
TTGTATAATTCTCAATATGAAGAATATTATAATTCATTAAAAAATAGAAAAAATAATAATTTAAGAAATAGTAATTATAT
GTATGGAGAAAGAAATAATAGAAGAGAAAATTTTAATAGTAATTTTTTTCAGAAACGTATTATTAGAGATCTAATAGGGG
TATTTTTATTATCGGTATTTGTTTTAAGTTTAAAAGCTTTTTCTAATTCCCAAACTCAGATGGTGTATAATTACTCTAAA
AAAATAGTTAATGAAAATTATGATTATAAAAAAGTAATTAATAAGGCTAAAAACTTAGATGTAAATTTTTTAGAAGATAA
AATTTTAAGATATATAGACACTTTTAAATCGAAGGTTACAGGAGAAAAGACTATAGAAGAATTAATAAGTAATGATTTTG
TACTACCTGTAAATGGCAAAGTAACTTCCACCTACGGAGAAAGAGAAGATCCTATAAATAAGAGAAAAGCTTTTCATAAA
GGGATAGATATAGATGCTAAAGAAAACACAGAAGTACTAGCAAGTTTTGGTGGCACAGTAAAGGAATGTGGAGAAGATAA
AGAGTTAGGTAAATATATACTCTTAGATCATGGACAAGGCATAGAAACTAAATATGCTCATTTAAATAAAATAAAGGTAA
AGAAAGGGGAAGAAGTGAAAAAAGGAAAAGATATAGCTGAAAGTGGTAATACAGGGAAGAGTACAGGAGCCCATCTTCAT
TTTGAAATAATTTATATGGGAGAGAATAAAAATCCACAAGATTATTTTTCAAATATAAAAGAATAA

Upstream 100 bases:

>100_bases
CAATATATGACTTTGTTATTTATAGAAAATTTTTTAAGTAATAAATAGATAAAAAATCCAATATAAATAAGAATATAAAA
GTATTGTAGGAGTGGTTAGA

Downstream 100 bases:

>100_bases
AAGTAATGTATAGTGAATATTGTAGTAGATGTAAGCAATTCTTAAGAGGCAAACATGGTAAAAATAAATAAATATTTTAT
TCCCTATGTGGTATTCTTAT

Product: peptidase, family M23/M37

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MYNSQYEEYYNSLKNRKNNNLRNSNYMYGERNNRRENFNSNFFQKRIIRDLIGVFLLSVFVLSLKAFSNSQTQMVYNYSK
KIVNENYDYKKVINKAKNLDVNFLEDKILRYIDTFKSKVTGEKTIEELISNDFVLPVNGKVTSTYGEREDPINKRKAFHK
GIDIDAKENTEVLASFGGTVKECGEDKELGKYILLDHGQGIETKYAHLNKIKVKKGEEVKKGKDIAESGNTGKSTGAHLH
FEIIYMGENKNPQDYFSNIKE

Sequences:

>Translated_261_residues
MYNSQYEEYYNSLKNRKNNNLRNSNYMYGERNNRRENFNSNFFQKRIIRDLIGVFLLSVFVLSLKAFSNSQTQMVYNYSK
KIVNENYDYKKVINKAKNLDVNFLEDKILRYIDTFKSKVTGEKTIEELISNDFVLPVNGKVTSTYGEREDPINKRKAFHK
GIDIDAKENTEVLASFGGTVKECGEDKELGKYILLDHGQGIETKYAHLNKIKVKKGEEVKKGKDIAESGNTGKSTGAHLH
FEIIYMGENKNPQDYFSNIKE
>Mature_261_residues
MYNSQYEEYYNSLKNRKNNNLRNSNYMYGERNNRRENFNSNFFQKRIIRDLIGVFLLSVFVLSLKAFSNSQTQMVYNYSK
KIVNENYDYKKVINKAKNLDVNFLEDKILRYIDTFKSKVTGEKTIEELISNDFVLPVNGKVTSTYGEREDPINKRKAFHK
GIDIDAKENTEVLASFGGTVKECGEDKELGKYILLDHGQGIETKYAHLNKIKVKKGEEVKKGKDIAESGNTGKSTGAHLH
FEIIYMGENKNPQDYFSNIKE

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=105, Percent_Identity=41.9047619047619, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789099, Length=125, Percent_Identity=34.4, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 30258; Mature: 30258

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNSQYEEYYNSLKNRKNNNLRNSNYMYGERNNRRENFNSNFFQKRIIRDLIGVFLLSVF
CCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VLSLKAFSNSQTQMVYNYSKKIVNENYDYKKVINKAKNLDVNFLEDKILRYIDTFKSKVT
HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
GEKTIEELISNDFVLPVNGKVTSTYGEREDPINKRKAFHKGIDIDAKENTEVLASFGGTV
CHHHHHHHHCCCEEEECCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCHH
KECGEDKELGKYILLDHGQGIETKYAHLNKIKVKKGEEVKKGKDIAESGNTGKSTGAHLH
HHHCCCHHCCCEEEEECCCCCCHHHHHHHHEECCCCCHHHHCCHHHHCCCCCCCCCCEEE
FEIIYMGENKNPQDYFSNIKE
EEEEEECCCCCHHHHHHHCCC
>Mature Secondary Structure
MYNSQYEEYYNSLKNRKNNNLRNSNYMYGERNNRRENFNSNFFQKRIIRDLIGVFLLSVF
CCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VLSLKAFSNSQTQMVYNYSKKIVNENYDYKKVINKAKNLDVNFLEDKILRYIDTFKSKVT
HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
GEKTIEELISNDFVLPVNGKVTSTYGEREDPINKRKAFHKGIDIDAKENTEVLASFGGTV
CHHHHHHHHCCCEEEECCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCHH
KECGEDKELGKYILLDHGQGIETKYAHLNKIKVKKGEEVKKGKDIAESGNTGKSTGAHLH
HHHCCCHHCCCEEEEECCCCCCHHHHHHHHEECCCCCHHHHCCHHHHCCCCCCCCCCEEE
FEIIYMGENKNPQDYFSNIKE
EEEEEECCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]