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The map label for this gene is 226950416

Identifier: 226950416

GI number: 226950416

Start: 3421403

End: 3423253

Strand: Reverse

Name: 226950416

Synonym: CLM_3388

Alternate gene names: NA

Gene position: 3423253-3421403 (Counterclockwise)

Preceding gene: 226950417

Following gene: 226950415

Centisome position: 82.38

GC content: 31.12

Gene sequence:

>1851_bases
ATGAACAGAATATCAGATGATGTACTATTCAGAGTAGAAAAACCTGCCAGATATATAGGAGGAGAATTAAATTCTTATAA
TAAAGATTTAAATGATATAGACATAAGATATGCATTTTGTTTTCCAGATGTTTATGAAGTTGGAATGTCTCATTTAGGTA
TGAAAATACTTTATTACATATTAAATGAGAGAAAAGATACTTTCTGTGAAAGAGTTTTTGCACCTTGGCCAGATATGGAG
AAAATAATGAGGGAAGAAAATATTCCGCTATATGGTTTGGAAAGCAAAGATCCCATAAAGGATTTTGATTTTATAGGATT
TACTCTGCAATATGAGATGAGTTACACTAATATATTAAATATGTTAGATCTAGCTGGAGTTACTATAAGGGCTTCGGAAA
GAGGGGAAGAGGAACCTATAGTAATGTGCGGAGGACCTTGTGCATATAACCCAGAACCACTTTATAACATAGCAGATATG
TTTGTTCTAGGAGAAGGGGAAGAATTAAATACTAAGATATTAGATTTATATAAAAAATATAAAGGCAAAGGAAAGAAAAA
TGAATTTTTGAGAGAAGCATCTAAAATAAGAGGGGTGTATATACCTTCTCTCTATGAAGTTACCTATAAAGAAGATAATA
CTATAAAAGAATTTAAACCTCTATATGATGATGTGCCTAAAAAAGTAAAAAAAGTTATTGTTAATAGTATAAACGATGTA
GTTTATCCAGATAAGTTTGTTGTTCCTTATACTGATATAGTTCATGATAGAATAGTTTTAGAAACTTTTAGAGGATGTAC
AAGAGGCTGTAGATTTTGTCAAGCTGGAATGATATATAGACCTGTAAGAGAAAAGAAAACAGAAAGGTTATTAGAATTAT
CTGATAAATTAATAAAAAATACAGGATATGATGAAGTAACACTATCTTCTTTAAGTATATGTGATTATTCTGATATACAA
AATCTTGTATTCTCAATGGTAGAAAGACATAAAGAGGGTAAAGTAGGAGTAACATTACCTTCATTAAGAATAGATTCTTT
TTCAGTAGATTTAATAAAAGAAATACAAAAGGTTAGAAAAACCGGACTTACTTTTGCACCAGAGGCAGGAAGTCAAAGGA
TGAGAGATGTTATAAATAAAGGTGTAACAGAAGAAAATTTAATGACCTCAGTAAAAAGTGCTTTTGAAGCAGGTTGGTCT
ACTATAAAATTATACTTTATGCTAGGATTGCCTTATGAAACATTAGAAGATGTTATAGGAATAGCAGAGTTGGGACAAAA
GGTTGTACAAAAATATTATGAAGTTCCAAAGGAAGTAAGAAAGAAGGGACTTAAGGTTACTGTAAGTACGTCTATTTTCG
TACCAAAGCCATTTACGCCATTTCAATGGGCACCACAGGATACCATGGAAGATGTAAGAAAGAAAATAGAGGCTGTAAGA
GGAGCTATAAAAAGTAAACAAATAACTTATAACTGGCATGAATCCTTAGTAAGTTATATGGAAGCTCTATTTGCAAGAGG
AGATAGAAGAATTTGTGATGTTTTAATAAAAGCTTTTGAAAAAGGTGCTAGATTTGATGGATGGAATCAATATTTTGACT
TTAATATATGGAAAGAATCCTTGGAAGAATGCAATGTAGATGGAGATTTTTATGCTTATAGACAAAGAGAATATGATGAA
ATACTTCCTTGGGATTTTGTAGATACAGGAGTTTCAAAGGAGTTCTTAATGAGAGAAAATGAAAGAGCTAAAAAGGCAGA
AGTAACTCCAGATTGTAGACAGGGCTGTAAGAATTGCGGAGTAAATGTTAATTTAGAAGGAGAGTGTTTTGAAGGTGCGA
TATCTAATTAA

Upstream 100 bases:

>100_bases
TTATAAGCATGGATAGGACAATGGATTCTTTTGTAATTGTTTTTATCCATGCTTATGTGTTAAAATGTAATAATGTGATA
AACCATGAGGAGGAAATTTG

Downstream 100 bases:

>100_bases
ATTTTCAAAGGAAGGTAATATAAAATTTGTATCTCATTTAGACCTTCAAAGAACTCTACAAAGAAATTTTAAAAGAAGTG
GATTACCTGTAGAGTATTCA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 616; Mature: 616

Protein sequence:

>616_residues
MNRISDDVLFRVEKPARYIGGELNSYNKDLNDIDIRYAFCFPDVYEVGMSHLGMKILYYILNERKDTFCERVFAPWPDME
KIMREENIPLYGLESKDPIKDFDFIGFTLQYEMSYTNILNMLDLAGVTIRASERGEEEPIVMCGGPCAYNPEPLYNIADM
FVLGEGEELNTKILDLYKKYKGKGKKNEFLREASKIRGVYIPSLYEVTYKEDNTIKEFKPLYDDVPKKVKKVIVNSINDV
VYPDKFVVPYTDIVHDRIVLETFRGCTRGCRFCQAGMIYRPVREKKTERLLELSDKLIKNTGYDEVTLSSLSICDYSDIQ
NLVFSMVERHKEGKVGVTLPSLRIDSFSVDLIKEIQKVRKTGLTFAPEAGSQRMRDVINKGVTEENLMTSVKSAFEAGWS
TIKLYFMLGLPYETLEDVIGIAELGQKVVQKYYEVPKEVRKKGLKVTVSTSIFVPKPFTPFQWAPQDTMEDVRKKIEAVR
GAIKSKQITYNWHESLVSYMEALFARGDRRICDVLIKAFEKGARFDGWNQYFDFNIWKESLEECNVDGDFYAYRQREYDE
ILPWDFVDTGVSKEFLMRENERAKKAEVTPDCRQGCKNCGVNVNLEGECFEGAISN

Sequences:

>Translated_616_residues
MNRISDDVLFRVEKPARYIGGELNSYNKDLNDIDIRYAFCFPDVYEVGMSHLGMKILYYILNERKDTFCERVFAPWPDME
KIMREENIPLYGLESKDPIKDFDFIGFTLQYEMSYTNILNMLDLAGVTIRASERGEEEPIVMCGGPCAYNPEPLYNIADM
FVLGEGEELNTKILDLYKKYKGKGKKNEFLREASKIRGVYIPSLYEVTYKEDNTIKEFKPLYDDVPKKVKKVIVNSINDV
VYPDKFVVPYTDIVHDRIVLETFRGCTRGCRFCQAGMIYRPVREKKTERLLELSDKLIKNTGYDEVTLSSLSICDYSDIQ
NLVFSMVERHKEGKVGVTLPSLRIDSFSVDLIKEIQKVRKTGLTFAPEAGSQRMRDVINKGVTEENLMTSVKSAFEAGWS
TIKLYFMLGLPYETLEDVIGIAELGQKVVQKYYEVPKEVRKKGLKVTVSTSIFVPKPFTPFQWAPQDTMEDVRKKIEAVR
GAIKSKQITYNWHESLVSYMEALFARGDRRICDVLIKAFEKGARFDGWNQYFDFNIWKESLEECNVDGDFYAYRQREYDE
ILPWDFVDTGVSKEFLMRENERAKKAEVTPDCRQGCKNCGVNVNLEGECFEGAISN
>Mature_616_residues
MNRISDDVLFRVEKPARYIGGELNSYNKDLNDIDIRYAFCFPDVYEVGMSHLGMKILYYILNERKDTFCERVFAPWPDME
KIMREENIPLYGLESKDPIKDFDFIGFTLQYEMSYTNILNMLDLAGVTIRASERGEEEPIVMCGGPCAYNPEPLYNIADM
FVLGEGEELNTKILDLYKKYKGKGKKNEFLREASKIRGVYIPSLYEVTYKEDNTIKEFKPLYDDVPKKVKKVIVNSINDV
VYPDKFVVPYTDIVHDRIVLETFRGCTRGCRFCQAGMIYRPVREKKTERLLELSDKLIKNTGYDEVTLSSLSICDYSDIQ
NLVFSMVERHKEGKVGVTLPSLRIDSFSVDLIKEIQKVRKTGLTFAPEAGSQRMRDVINKGVTEENLMTSVKSAFEAGWS
TIKLYFMLGLPYETLEDVIGIAELGQKVVQKYYEVPKEVRKKGLKVTVSTSIFVPKPFTPFQWAPQDTMEDVRKKIEAVR
GAIKSKQITYNWHESLVSYMEALFARGDRRICDVLIKAFEKGARFDGWNQYFDFNIWKESLEECNVDGDFYAYRQREYDE
ILPWDFVDTGVSKEFLMRENERAKKAEVTPDCRQGCKNCGVNVNLEGECFEGAISN

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 71212; Mature: 71212

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRISDDVLFRVEKPARYIGGELNSYNKDLNDIDIRYAFCFPDVYEVGMSHLGMKILYYI
CCCCCCHHHEEECCCHHHHCCCHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH
LNERKDTFCERVFAPWPDMEKIMREENIPLYGLESKDPIKDFDFIGFTLQYEMSYTNILN
HHCCHHHHHHHHCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEEECHHHHHHH
MLDLAGVTIRASERGEEEPIVMCGGPCAYNPEPLYNIADMFVLGEGEELNTKILDLYKKY
HHHHCCCEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHEEEECCCCCHHHHHHHHHHHH
KGKGKKNEFLREASKIRGVYIPSLYEVTYKEDNTIKEFKPLYDDVPKKVKKVIVNSINDV
CCCCCHHHHHHHHHHCCCEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
VYPDKFVVPYTDIVHDRIVLETFRGCTRGCRFCQAGMIYRPVREKKTERLLELSDKLIKN
CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
TGYDEVTLSSLSICDYSDIQNLVFSMVERHKEGKVGVTLPSLRIDSFSVDLIKEIQKVRK
CCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHHHHHH
TGLTFAPEAGSQRMRDVINKGVTEENLMTSVKSAFEAGWSTIKLYFMLGLPYETLEDVIG
CCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHEEEEHHCCCCHHHHHHHHH
IAELGQKVVQKYYEVPKEVRKKGLKVTVSTSIFVPKPFTPFQWAPQDTMEDVRKKIEAVR
HHHHHHHHHHHHHHCHHHHHHCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
GAIKSKQITYNWHESLVSYMEALFARGDRRICDVLIKAFEKGARFDGWNQYFDFNIWKES
HHHHCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHH
LEECNVDGDFYAYRQREYDEILPWDFVDTGVSKEFLMRENERAKKAEVTPDCRQGCKNCG
HHHCCCCCCCHHHHHCCHHHCCCCCHHHCCCCHHHHHCCCCHHHHCCCCHHHHHHHHHCC
VNVNLEGECFEGAISN
CEEECCCHHCCCCCCC
>Mature Secondary Structure
MNRISDDVLFRVEKPARYIGGELNSYNKDLNDIDIRYAFCFPDVYEVGMSHLGMKILYYI
CCCCCCHHHEEECCCHHHHCCCHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH
LNERKDTFCERVFAPWPDMEKIMREENIPLYGLESKDPIKDFDFIGFTLQYEMSYTNILN
HHCCHHHHHHHHCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCEEEEEEEEECHHHHHHH
MLDLAGVTIRASERGEEEPIVMCGGPCAYNPEPLYNIADMFVLGEGEELNTKILDLYKKY
HHHHCCCEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHEEEECCCCCHHHHHHHHHHHH
KGKGKKNEFLREASKIRGVYIPSLYEVTYKEDNTIKEFKPLYDDVPKKVKKVIVNSINDV
CCCCCHHHHHHHHHHCCCEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
VYPDKFVVPYTDIVHDRIVLETFRGCTRGCRFCQAGMIYRPVREKKTERLLELSDKLIKN
CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
TGYDEVTLSSLSICDYSDIQNLVFSMVERHKEGKVGVTLPSLRIDSFSVDLIKEIQKVRK
CCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHHHHHH
TGLTFAPEAGSQRMRDVINKGVTEENLMTSVKSAFEAGWSTIKLYFMLGLPYETLEDVIG
CCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHEEEEHHCCCCHHHHHHHHH
IAELGQKVVQKYYEVPKEVRKKGLKVTVSTSIFVPKPFTPFQWAPQDTMEDVRKKIEAVR
HHHHHHHHHHHHHHCHHHHHHCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
GAIKSKQITYNWHESLVSYMEALFARGDRRICDVLIKAFEKGARFDGWNQYFDFNIWKES
HHHHCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHH
LEECNVDGDFYAYRQREYDEILPWDFVDTGVSKEFLMRENERAKKAEVTPDCRQGCKNCG
HHHCCCCCCCHHHHHCCHHHCCCCCHHHCCCCHHHHHCCCCHHHHCCCCHHHHHHHHHCC
VNVNLEGECFEGAISN
CEEECCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]