| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is yhgE [H]
Identifier: 226950355
GI number: 226950355
Start: 3351060
End: 3353219
Strand: Reverse
Name: yhgE [H]
Synonym: CLM_3322
Alternate gene names: 226950355
Gene position: 3353219-3351060 (Counterclockwise)
Preceding gene: 226950356
Following gene: 226950354
Centisome position: 80.7
GC content: 26.76
Gene sequence:
>2160_bases GTGAAAAATATTTTTAAAATTTATAATAGAGATCTACAAAATATAATAACGAATTGGGTAGCTATAGTTGTAATGTTAGG ACTCATGATATTGCCTTCTTTATATGCCTGGTTTAATATAAAGTCTTCTTGGGATCCATACTCTAATACAAAGTCAATAT CTGTAGCCGTAGTAAATAAAGATAAAGCTGCCTTTTTTAAAGGGCAAAGTATTAATGTAGGGGAAGAACTTGTAAACAAG CTAAAAATAAATAAAAATATTGGATGGAAATTTGTAGATGAAAAAGAGGCTGAAAAGGGAGTAAAGTATGGAAAGTACTA TGCCAGTATAATGATACCAGAAGACTTTTCTTATAAAATTTTATCCATAACTAGAGATAAACAAGAAAAACCAACCTTAA TTTATTCGGTAAATGAAAAGAGCAATGCAGTTGCACCTAAGATAACAAGTAAAGGGGTTACAACAATACAAAGTGAGGTT ACAAAAATTTTTGTAAAAACAGTAAATGGTATTATATTTGAAATGTTTAATAAGTTGGGAATAGAGCTGGAAAAAGGAAA ACCAAAGCTTAAAGATTTAATGAATATGATTTTTTATGTCAATGATAAGATACCCGAAATAAACGCCTCTATAGATAAGC TAGAAAAGGGTGCTATAACCTTAGAAGAATTTATAGAAAAAATAAATAAGGATATCCCTTTAATAAAAGATACTATAAAT AGGGCTTTAAGTGCAGGAGATAAAACAAAATTATTCTTATCAAAATCTAAGGAAGGAATAAATAATGCAGCACCTTATAT AAAACAAGATCTAATTATAGCTAGAAAAATAAATAGTACAGCAGAAGTTTTAATAGAAGAAGGTGTAGATTTAATAGGAA AAAATTCTTCAAAAGCTAGAGAGAATTTATTATCATCAAAGGATAAGTTGACTAATGTAAAAGAAATTTTAAATAGCATA TTGGAGTTAATTGATATTATAAATAGAGATAAAAAGAATATTATAATGAACGATTTTGAAAATAAGATTAAAGATATGAA AGAAAGAGTAAATAATAAAATAGAAAATATAAATACTGTAATATCTTCTATAGATAGAGGTGAAAAAGTGTCTGTAGAAG TATTAAATAGGCTAAATAATAAAGCTAATGGTATAGATTCTATATTAGAAAAGACTATAGAGGATTTTAATCCCAAAATA GTACCGGCTATAAACAATGTTCTTAATGATTTAATAGTCGTAGCGGATAATACTATACAATTATTGAAGAATGCTAATGA AAATTTACCAGGGGCAACTGAGCTATTAGATAAGGGATATACTGGAGCAGAAAAAGGTATAAAAGGCATAAAAATTCTTA AATCTAACTTACCCTCTATAGAAAAGTCTATAGGAGAGGTATCAAATAAGCTTAAGACTTTAGATGATGATGAGAAATTA AATGAAATAATAAAACTAATGAAAAGTAATGCAAAAATAGAAAGTGATTTTATATCAAATCCTGTAGAAATAAAAGAAAA TAGAATTTATCCTATTCCTAATTATGGATCAGCCATGGCTCCTTTTTTTACAACTTTATCTCTTTGGGTAGGAGCACTAA TTTTAGTTTCTATACTTTCAGTAGAGGTAAAAGATATAAAAGGAGCAAAAAAATTAAAAGTACATGAAAAATACTTTGGG AGATATTTTACATTTATGACTATAGCTATATTTCAAGCTTTAATAGTTAGTTTAGGGGATATATATTTATTAAAAGTATA TGTATCAAATAAATCAATATTTATTTTATTTTCAATATTTATAAGCATAATATTTTCTATGATAATATATACATTAGTAT CTGTGTTTGGCAATGTAGGAAAAGCTTTAGGAGTAATACTTCTAGTGCTCCAAATATCTGCTTCAGGAGGAACTTTCCCT ATAGAAGTCACTCCAAGATTTTTTCAAAGGATAAATCCATTATTGCCTTTTACGTATGCTGTATCAGGTATGAGAGAGGC AGTGGGTGGAGTTATAGAAGGCATACTTTTAAGAGATATAATAATATTGCTAATTTATTTTACCCTATCAATACTATTAG CTTTATTATTAAAGAAAAAGTTGGAAAAAGTAAATAAAAACTTTGTAAAAAAATTTAAAGAAAGTGGTTTAGTAGAATAA
Upstream 100 bases:
>100_bases ATTAGGTATTTAAAGTTGTAAATATAGAAATACTAAGGTTTATAAGAGAGTTTTTCATTGTAATATACTTTTTTTATAAA AGGTGAAAAGGGGGCATTCG
Downstream 100 bases:
>100_bases TAAATTAATAAGTAACATTAGTTACGGAATTTTTAATTGAAAAATATTAATATATAGATATAGAAAATGTAATTCTTTAG TTTATGCTATAAGAAAGATT
Product: putative phage infection protein
Products: NA
Alternate protein names: ORFB [H]
Number of amino acids: Translated: 719; Mature: 719
Protein sequence:
>719_residues MKNIFKIYNRDLQNIITNWVAIVVMLGLMILPSLYAWFNIKSSWDPYSNTKSISVAVVNKDKAAFFKGQSINVGEELVNK LKINKNIGWKFVDEKEAEKGVKYGKYYASIMIPEDFSYKILSITRDKQEKPTLIYSVNEKSNAVAPKITSKGVTTIQSEV TKIFVKTVNGIIFEMFNKLGIELEKGKPKLKDLMNMIFYVNDKIPEINASIDKLEKGAITLEEFIEKINKDIPLIKDTIN RALSAGDKTKLFLSKSKEGINNAAPYIKQDLIIARKINSTAEVLIEEGVDLIGKNSSKARENLLSSKDKLTNVKEILNSI LELIDIINRDKKNIIMNDFENKIKDMKERVNNKIENINTVISSIDRGEKVSVEVLNRLNNKANGIDSILEKTIEDFNPKI VPAINNVLNDLIVVADNTIQLLKNANENLPGATELLDKGYTGAEKGIKGIKILKSNLPSIEKSIGEVSNKLKTLDDDEKL NEIIKLMKSNAKIESDFISNPVEIKENRIYPIPNYGSAMAPFFTTLSLWVGALILVSILSVEVKDIKGAKKLKVHEKYFG RYFTFMTIAIFQALIVSLGDIYLLKVYVSNKSIFILFSIFISIIFSMIIYTLVSVFGNVGKALGVILLVLQISASGGTFP IEVTPRFFQRINPLLPFTYAVSGMREAVGGVIEGILLRDIIILLIYFTLSILLALLLKKKLEKVNKNFVKKFKESGLVE
Sequences:
>Translated_719_residues MKNIFKIYNRDLQNIITNWVAIVVMLGLMILPSLYAWFNIKSSWDPYSNTKSISVAVVNKDKAAFFKGQSINVGEELVNK LKINKNIGWKFVDEKEAEKGVKYGKYYASIMIPEDFSYKILSITRDKQEKPTLIYSVNEKSNAVAPKITSKGVTTIQSEV TKIFVKTVNGIIFEMFNKLGIELEKGKPKLKDLMNMIFYVNDKIPEINASIDKLEKGAITLEEFIEKINKDIPLIKDTIN RALSAGDKTKLFLSKSKEGINNAAPYIKQDLIIARKINSTAEVLIEEGVDLIGKNSSKARENLLSSKDKLTNVKEILNSI LELIDIINRDKKNIIMNDFENKIKDMKERVNNKIENINTVISSIDRGEKVSVEVLNRLNNKANGIDSILEKTIEDFNPKI VPAINNVLNDLIVVADNTIQLLKNANENLPGATELLDKGYTGAEKGIKGIKILKSNLPSIEKSIGEVSNKLKTLDDDEKL NEIIKLMKSNAKIESDFISNPVEIKENRIYPIPNYGSAMAPFFTTLSLWVGALILVSILSVEVKDIKGAKKLKVHEKYFG RYFTFMTIAIFQALIVSLGDIYLLKVYVSNKSIFILFSIFISIIFSMIIYTLVSVFGNVGKALGVILLVLQISASGGTFP IEVTPRFFQRINPLLPFTYAVSGMREAVGGVIEGILLRDIIILLIYFTLSILLALLLKKKLEKVNKNFVKKFKESGLVE >Mature_719_residues MKNIFKIYNRDLQNIITNWVAIVVMLGLMILPSLYAWFNIKSSWDPYSNTKSISVAVVNKDKAAFFKGQSINVGEELVNK LKINKNIGWKFVDEKEAEKGVKYGKYYASIMIPEDFSYKILSITRDKQEKPTLIYSVNEKSNAVAPKITSKGVTTIQSEV TKIFVKTVNGIIFEMFNKLGIELEKGKPKLKDLMNMIFYVNDKIPEINASIDKLEKGAITLEEFIEKINKDIPLIKDTIN RALSAGDKTKLFLSKSKEGINNAAPYIKQDLIIARKINSTAEVLIEEGVDLIGKNSSKARENLLSSKDKLTNVKEILNSI LELIDIINRDKKNIIMNDFENKIKDMKERVNNKIENINTVISSIDRGEKVSVEVLNRLNNKANGIDSILEKTIEDFNPKI VPAINNVLNDLIVVADNTIQLLKNANENLPGATELLDKGYTGAEKGIKGIKILKSNLPSIEKSIGEVSNKLKTLDDDEKL NEIIKLMKSNAKIESDFISNPVEIKENRIYPIPNYGSAMAPFFTTLSLWVGALILVSILSVEVKDIKGAKKLKVHEKYFG RYFTFMTIAIFQALIVSLGDIYLLKVYVSNKSIFILFSIFISIIFSMIIYTLVSVFGNVGKALGVILLVLQISASGGTFP IEVTPRFFQRINPLLPFTYAVSGMREAVGGVIEGILLRDIIILLIYFTLSILLALLLKKKLEKVNKNFVKKFKESGLVE
Specific function: Unknown
COG id: COG1511
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To L.lactis phage infection protein (PIP) [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013525 - InterPro: IPR022703 - InterPro: IPR017501 - InterPro: IPR017500 [H]
Pfam domain/function: PF01061 ABC2_membrane; PF12051 DUF3533 [H]
EC number: NA
Molecular weight: Translated: 80737; Mature: 80737
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNIFKIYNRDLQNIITNWVAIVVMLGLMILPSLYAWFNIKSSWDPYSNTKSISVAVVNK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEC DKAAFFKGQSINVGEELVNKLKINKNIGWKFVDEKEAEKGVKYGKYYASIMIPEDFSYKI CCHHHCCCCCCCHHHHHHHHHHCCCCCCCEECCHHHHHCCCHHHHHEEEEECCCCCCEEE LSITRDKQEKPTLIYSVNEKSNAVAPKITSKGVTTIQSEVTKIFVKTVNGIIFEMFNKLG EEEECCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC IELEKGKPKLKDLMNMIFYVNDKIPEINASIDKLEKGAITLEEFIEKINKDIPLIKDTIN CEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH RALSAGDKTKLFLSKSKEGINNAAPYIKQDLIIARKINSTAEVLIEEGVDLIGKNSSKAR HHHCCCCCCEEEHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCHHHHCCCCHHHH ENLLSSKDKLTNVKEILNSILELIDIINRDKKNIIMNDFENKIKDMKERVNNKIENINTV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISSIDRGEKVSVEVLNRLNNKANGIDSILEKTIEDFNPKIVPAINNVLNDLIVVADNTIQ HHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCHHHH LLKNANENLPGATELLDKGYTGAEKGIKGIKILKSNLPSIEKSIGEVSNKLKTLDDDEKL HHHCCCCCCCCHHHHHHCCCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH NEIIKLMKSNAKIESDFISNPVEIKENRIYPIPNYGSAMAPFFTTLSLWVGALILVSILS HHHHHHHHHCCCCCHHHCCCCCEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH VEVKDIKGAKKLKVHEKYFGRYFTFMTIAIFQALIVSLGDIYLLKVYVSNKSIFILFSIF HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHH ISIIFSMIIYTLVSVFGNVGKALGVILLVLQISASGGTFPIEVTPRFFQRINPLLPFTYA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECHHHHHHCCCCCHHHHH VSGMREAVGGVIEGILLRDIIILLIYFTLSILLALLLKKKLEKVNKNFVKKFKESGLVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKNIFKIYNRDLQNIITNWVAIVVMLGLMILPSLYAWFNIKSSWDPYSNTKSISVAVVNK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEC DKAAFFKGQSINVGEELVNKLKINKNIGWKFVDEKEAEKGVKYGKYYASIMIPEDFSYKI CCHHHCCCCCCCHHHHHHHHHHCCCCCCCEECCHHHHHCCCHHHHHEEEEECCCCCCEEE LSITRDKQEKPTLIYSVNEKSNAVAPKITSKGVTTIQSEVTKIFVKTVNGIIFEMFNKLG EEEECCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC IELEKGKPKLKDLMNMIFYVNDKIPEINASIDKLEKGAITLEEFIEKINKDIPLIKDTIN CEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH RALSAGDKTKLFLSKSKEGINNAAPYIKQDLIIARKINSTAEVLIEEGVDLIGKNSSKAR HHHCCCCCCEEEHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCHHHHCCCCHHHH ENLLSSKDKLTNVKEILNSILELIDIINRDKKNIIMNDFENKIKDMKERVNNKIENINTV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISSIDRGEKVSVEVLNRLNNKANGIDSILEKTIEDFNPKIVPAINNVLNDLIVVADNTIQ HHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCHHHH LLKNANENLPGATELLDKGYTGAEKGIKGIKILKSNLPSIEKSIGEVSNKLKTLDDDEKL HHHCCCCCCCCHHHHHHCCCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH NEIIKLMKSNAKIESDFISNPVEIKENRIYPIPNYGSAMAPFFTTLSLWVGALILVSILS HHHHHHHHHCCCCCHHHCCCCCEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH VEVKDIKGAKKLKVHEKYFGRYFTFMTIAIFQALIVSLGDIYLLKVYVSNKSIFILFSIF HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHH ISIIFSMIIYTLVSVFGNVGKALGVILLVLQISASGGTFPIEVTPRFFQRINPLLPFTYA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECHHHHHHCCCCCHHHHH VSGMREAVGGVIEGILLRDIIILLIYFTLSILLALLLKKKLEKVNKNFVKKFKESGLVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 1459957 [H]