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The map label for this gene is yqjN [H]

Identifier: 226950337

GI number: 226950337

Start: 3335561

End: 3337192

Strand: Reverse

Name: yqjN [H]

Synonym: CLM_3303

Alternate gene names: 226950337

Gene position: 3337192-3335561 (Counterclockwise)

Preceding gene: 226950338

Following gene: 226950336

Centisome position: 80.31

GC content: 26.9

Gene sequence:

>1632_bases
ATGATGATGAGAGATAAAATATTCGAAACTTTAGATAGATTAGTAAAAATACCTAGTATATCAGGAACAGAAAAAGAAAA
TTTGGCAGTAGATGAAATCTATAATATATTAATGGATATAGATTATTTTAAAAATAATAAGAGCAATGTAAAAGTACATA
ATATAGAAGGGGATATGCATAACAGGTGCTTTTTAACAGCATTGTTAGAAGGTAAGAAGCCATCAAAGAATATAATAATA
TTAACAGGACATTTAGATGTAGTAGATATAGATGAATTTGGCATTTTAAAAAATATAGCTTTTGACTATAAAGAATATAC
CAAAAGAGTATCAGATTTAGTATTGGATCAGGATTCCAAAAAGGATTTATATTCTAATGAGTGGATATTTGGTAGAGGTA
CAGCAGATATGAAATATGGACTAGCTCTTTATATAGAATTAATAAGAGAGTTATCAAAAGATAGAGATTTTAAAGGAAAT
ATACTGTTTTTAGCAGTACCGGGAGAAGAAAGTAACTCAGAAGGAATGTTAGGGGCAATACCTTATTTATCTAAATTAAA
AGAAGACGGCTATAATTTTAAATCTTTATTTTTATCAGAATGTTGTATACCTAAATATGAAGGGGACGATGCCAAAAGAA
TCTACATAGGCTCTGTGGGAAAAATAATGCCAACTTTCTTTTGTGTAGGAAAAGCAACTCATGTAGGCAATCCTTTTGGA
GGGGTAAATCCTAATTTATTAGTATCTGAAATAAATAAACTTATGGAATATAATGTAGAGCTAAGTGATAAATATGAAAA
AGATATAACACCACCACCAGTTTGTTTAAAACAATCAGATCTAAAAGAATTATATTCTGTACAAAACCCTGTATATGCAT
ATTCTTATTATAATTTATTAACTATACAAAAAACTCCAGAAGAAATCATGGAGAATTTAAAGGATATAGCAAGGGACGCT
TTTTATAATACTCTTAAAATAATGAAAGAAAATTATAAAAAATATAAAGCAATATATGAAAGTAAATTAGAAGCAGACTT
AGATATAGAACCTAAAATCATAACTTTTGAAGAACTATATAAGGAAGTATTAAAGGAAAACAAAGATTTCGAAAAATATA
TAGAGACGGCTATAGAAAAATGGAAAGAAGAAAAATTAGATAATCAAACTATAGGAATAAAAATAATAAAAGAGACCTTT
GAACACTATAAATATCAACAGCCTATGATAATAATTGCATACAATGTACCTTATTATCCACATAGATATTTTGATAGTGA
AAATCCTAAATATACTAATTTGTTAAATTCATTAGATAACATGGGAATTTATGCAAAAGAAAAATATAATGTGAATATAG
AAAAAGAAAATTTCTTTATGGGTATAAGTGATTTAAGTTATACAGGTTTAGATGAAAAATTCAATATAGAGAGTATCTGC
GGAAATATGCCTGGTTTAGGTTATACATATAAATTTCCAGAAAAAGAACTAAAGAAATTTGATATACCATCTGTAGTATT
CGGAGGCTTTGGAAAGGATTTTCATAAATATACAGAGAGATTAAATATCCCATATTCTATGGAGATAGTTCCAGAATTGT
ATATGTATATATTAAAGGAAATGCTACAGTAG

Upstream 100 bases:

>100_bases
TAGATAGTATAGAATTTGGAAGGTTTACAGAACTTGAAGAAAAATATTTTAAAAAATTTGTGCAAATCCTTGTAGAAAAT
ATAGATTGGAGTGGTAAATA

Downstream 100 bases:

>100_bases
TAAACTACGGCTTAAAAGGAAGTTATACTACCCGTGGTTTAAAAAAGGGATATGTGGCGAGATCGGCAACTCACTTCAAT
AAGAGATTCTAACTTGTTTT

Product: peptidase, M20/M25/M40 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MMMRDKIFETLDRLVKIPSISGTEKENLAVDEIYNILMDIDYFKNNKSNVKVHNIEGDMHNRCFLTALLEGKKPSKNIII
LTGHLDVVDIDEFGILKNIAFDYKEYTKRVSDLVLDQDSKKDLYSNEWIFGRGTADMKYGLALYIELIRELSKDRDFKGN
ILFLAVPGEESNSEGMLGAIPYLSKLKEDGYNFKSLFLSECCIPKYEGDDAKRIYIGSVGKIMPTFFCVGKATHVGNPFG
GVNPNLLVSEINKLMEYNVELSDKYEKDITPPPVCLKQSDLKELYSVQNPVYAYSYYNLLTIQKTPEEIMENLKDIARDA
FYNTLKIMKENYKKYKAIYESKLEADLDIEPKIITFEELYKEVLKENKDFEKYIETAIEKWKEEKLDNQTIGIKIIKETF
EHYKYQQPMIIIAYNVPYYPHRYFDSENPKYTNLLNSLDNMGIYAKEKYNVNIEKENFFMGISDLSYTGLDEKFNIESIC
GNMPGLGYTYKFPEKELKKFDIPSVVFGGFGKDFHKYTERLNIPYSMEIVPELYMYILKEMLQ

Sequences:

>Translated_543_residues
MMMRDKIFETLDRLVKIPSISGTEKENLAVDEIYNILMDIDYFKNNKSNVKVHNIEGDMHNRCFLTALLEGKKPSKNIII
LTGHLDVVDIDEFGILKNIAFDYKEYTKRVSDLVLDQDSKKDLYSNEWIFGRGTADMKYGLALYIELIRELSKDRDFKGN
ILFLAVPGEESNSEGMLGAIPYLSKLKEDGYNFKSLFLSECCIPKYEGDDAKRIYIGSVGKIMPTFFCVGKATHVGNPFG
GVNPNLLVSEINKLMEYNVELSDKYEKDITPPPVCLKQSDLKELYSVQNPVYAYSYYNLLTIQKTPEEIMENLKDIARDA
FYNTLKIMKENYKKYKAIYESKLEADLDIEPKIITFEELYKEVLKENKDFEKYIETAIEKWKEEKLDNQTIGIKIIKETF
EHYKYQQPMIIIAYNVPYYPHRYFDSENPKYTNLLNSLDNMGIYAKEKYNVNIEKENFFMGISDLSYTGLDEKFNIESIC
GNMPGLGYTYKFPEKELKKFDIPSVVFGGFGKDFHKYTERLNIPYSMEIVPELYMYILKEMLQ
>Mature_543_residues
MMMRDKIFETLDRLVKIPSISGTEKENLAVDEIYNILMDIDYFKNNKSNVKVHNIEGDMHNRCFLTALLEGKKPSKNIII
LTGHLDVVDIDEFGILKNIAFDYKEYTKRVSDLVLDQDSKKDLYSNEWIFGRGTADMKYGLALYIELIRELSKDRDFKGN
ILFLAVPGEESNSEGMLGAIPYLSKLKEDGYNFKSLFLSECCIPKYEGDDAKRIYIGSVGKIMPTFFCVGKATHVGNPFG
GVNPNLLVSEINKLMEYNVELSDKYEKDITPPPVCLKQSDLKELYSVQNPVYAYSYYNLLTIQKTPEEIMENLKDIARDA
FYNTLKIMKENYKKYKAIYESKLEADLDIEPKIITFEELYKEVLKENKDFEKYIETAIEKWKEEKLDNQTIGIKIIKETF
EHYKYQQPMIIIAYNVPYYPHRYFDSENPKYTNLLNSLDNMGIYAKEKYNVNIEKENFFMGISDLSYTGLDEKFNIESIC
GNMPGLGYTYKFPEKELKKFDIPSVVFGGFGKDFHKYTERLNIPYSMEIVPELYMYILKEMLQ

Specific function: Unknown

COG id: COG4187

COG function: function code E; Arginine degradation protein (predicted deacylase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis rocB [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002933
- InterPro:   IPR012166 [H]

Pfam domain/function: PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 63304; Mature: 63304

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMRDKIFETLDRLVKIPSISGTEKENLAVDEIYNILMDIDYFKNNKSNVKVHNIEGDMH
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
NRCFLTALLEGKKPSKNIIILTGHLDVVDIDEFGILKNIAFDYKEYTKRVSDLVLDQDSK
CCEEEEHHHCCCCCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KDLYSNEWIFGRGTADMKYGLALYIELIRELSKDRDFKGNILFLAVPGEESNSEGMLGAI
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEHH
PYLSKLKEDGYNFKSLFLSECCIPKYEGDDAKRIYIGSVGKIMPTFFCVGKATHVGNPFG
HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHCCHHHCCCCCC
GVNPNLLVSEINKLMEYNVELSDKYEKDITPPPVCLKQSDLKELYSVQNPVYAYSYYNLL
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEE
TIQKTPEEIMENLKDIARDAFYNTLKIMKENYKKYKAIYESKLEADLDIEPKIITFEELY
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHH
KEVLKENKDFEKYIETAIEKWKEEKLDNQTIGIKIIKETFEHYKYQQPMIIIAYNVPYYP
HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
HRYFDSENPKYTNLLNSLDNMGIYAKEKYNVNIEKENFFMGISDLSYTGLDEKFNIESIC
HHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEECCCCCCCCCCCCCHHHHH
GNMPGLGYTYKFPEKELKKFDIPSVVFGGFGKDFHKYTERLNIPYSMEIVPELYMYILKE
CCCCCCCEEEECCHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
MLQ
HHC
>Mature Secondary Structure
MMMRDKIFETLDRLVKIPSISGTEKENLAVDEIYNILMDIDYFKNNKSNVKVHNIEGDMH
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
NRCFLTALLEGKKPSKNIIILTGHLDVVDIDEFGILKNIAFDYKEYTKRVSDLVLDQDSK
CCEEEEHHHCCCCCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KDLYSNEWIFGRGTADMKYGLALYIELIRELSKDRDFKGNILFLAVPGEESNSEGMLGAI
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEHH
PYLSKLKEDGYNFKSLFLSECCIPKYEGDDAKRIYIGSVGKIMPTFFCVGKATHVGNPFG
HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHCCHHHCCCCCC
GVNPNLLVSEINKLMEYNVELSDKYEKDITPPPVCLKQSDLKELYSVQNPVYAYSYYNLL
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEE
TIQKTPEEIMENLKDIARDAFYNTLKIMKENYKKYKAIYESKLEADLDIEPKIITFEELY
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHH
KEVLKENKDFEKYIETAIEKWKEEKLDNQTIGIKIIKETFEHYKYQQPMIIIAYNVPYYP
HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
HRYFDSENPKYTNLLNSLDNMGIYAKEKYNVNIEKENFFMGISDLSYTGLDEKFNIESIC
HHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEECCCCCCCCCCCCCHHHHH
GNMPGLGYTYKFPEKELKKFDIPSVVFGGFGKDFHKYTERLNIPYSMEIVPELYMYILKE
CCCCCCCEEEECCHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
MLQ
HHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]