| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is helD [H]
Identifier: 226950334
GI number: 226950334
Start: 3330514
End: 3332805
Strand: Reverse
Name: helD [H]
Synonym: CLM_3300
Alternate gene names: 226950334
Gene position: 3332805-3330514 (Counterclockwise)
Preceding gene: 226950335
Following gene: 226950333
Centisome position: 80.21
GC content: 24.17
Gene sequence:
>2292_bases ATGTCTATTGAACAAGAGGATTTTAATATTGAAGAAGAAAAATTAAATAAAACTATAGAGTGGATAAAGGAAAAAATAAT ATCTTTAAAAGAAAGAGAAGAACATATATTTAATAAAATAAATGAAATAAATAAGGAAGTTAAAGGATCATATAATTATG AAGTAGAGGCACTTCAAAATTCTTTACAAATAAATAGAAAGAATTTAAATTCTTATAAATCATCAATTTCTGTACCCTAT TTTGCTAGAATTGATTTTAAGGAAAAATTAAAGGATAATGAGAGTTTTTATATAGGAAAAGTAGGCCTATTAGATGAAGA AGATAAGGAAGAGATGGTTGTAGATTGGAGATCGCCTATAGCAGATCTTTATTATAGTGGCGTACAAGGTAAAGCTTCCT ATGAAGCTCCTATTGGAAATATAGAAGGAGAGCTTTTACTTAAAAGAAAGTTTATTATAAAAAATAAAAAGCTAATAGAT GCCTTTGATGAGGGGATAAATGAAATTATATTAAATTTTAATGGGGAAGATGAACAAAATGGAGAAAAGGCTTTAATAGA TGAATTCTTAAAAATTAACTTAGAAGAAAATAGAGGAAACAAATTAAAAGATATAGTTTCAACTATACAAAAAGAACAGA ATGATATTATAAGAGCAGATATGTATAAGCCGCTTATAATACAAGGTTCTGCAGGTTCAGGAAAAACTACTATAGCTCTT CATAGAATAGCCTATTTATTATATAAATATAAAAATAAAATTACAGGAGAGGATATAATAATACTAGCTCCCAATAAATT GTTTTTAGATTATATATCTGAAGTTCTCCCTAATTTAGGAGTTGATAAAGTAAAACAAAGCACTTTTAATAAACTTTCTA AAGAAATATTGAATTTTAATTATGAAATAATAGATAAGGATAAAAAATTATCTAAAATTATAGAAAATAAAAATAGCAAA GAAAACAAATTTATAACTAATAGTAATAAATTAAAAGGTTCTTTAGTTTATAAAAAAATGCTAGATAGATATATAAAATA TTTGGAATTAAATGATATGTTCATAGACGATATAAAAATAGATGGTTATGTAATATTTACTTCTAGAGAAATAATAAGAC TTTATAAAAATGATTTAAAGCATCTTCCGCTAAATAAAAGAAAAATTGAAATAGGAAGATATTTAAAGAACAAAATAGAG ACAAAAATTCAAAATGTATGGAATGATATAGATAAAGATTATATCTTAAAAATAAGAGAAGTAAGAGCAAAATACGAAGG TGAAGAAGAAAGAACTAATATTATAAAATTATATGAAGAAAGAGACAATAAAAAGGAAAAAATAAAATTAGAAGCAGAAG AAGTATTAAATAAAACTATTAGAAAATGGCTTATTGATGATGTAGTAGATGTATATAGAGATATGTATATTGATGAAGAA AACTTAAATTATGCCACATCAGGCATAATACCAGAAGTTTTAGTTAATTATATAAAAAATAAAATAGAAAAAGAAATAGA GAATGAAAAAATAGATGAAGAAGATCTAGCAGCACTTTTATACTTAAAAATAAAGATAGATGGAGTAGATAATTATAAAT TTGCCCATATGGTTATAGATGAGGCTCAAGATTATAGTCCCTTAGAATTATATGTATTAAAATTGCTTTCAAAAGCTAGA GGATATACTATAGTTGGTGATTTAGGTCAAAGTATATATTACTATAAAGGCATAGAAAACTGGGAAAAATTAATTAAAGA AGTATATGAAGAAGGAGAATATATTCAACTAAAACAAAGTTATCGTTCTACAGTGGAAATAGTAGATTTTGCAAATAAAG TACTAAGAAAACAAAAAAATAATTTAGAACCAGCTAAAGCAGTGTTAAGACATGGAAAACATCCAAAAAAGATTCAGTAT AAGGACGAAAAAGATTTCTATGAAAAATTAAATAGTGCTATTGAAACCATAGAAGAAAAGAAAGATAAAACTATAGCAAT AATCTGCAAAGATTATGAGCAGTGTGAGAGTTTAAAAGAGTCTTTACATTTAAAAGAAGAAAAACAATGGGAAATAGTAA CTAAAGATACTGAAATGTTACCTAAGAGAATAATTATACCATCATACATAACAAAAGGTTTAGAATTTGATTGTTCTATA ATTTATGATTGTAGTGATGAAAATTATAGAGAAACTGAATTAGACAAAAAGATTTTATATGTAGTTCTAACAAGAGCATT GCATGAAGAGTATATTTTTTATAAAGATAATATAACTAAGTTATTAATATAA
Upstream 100 bases:
>100_bases CCCTTAAAATATCGTAAAATAATAAAGTTAAATAAAGTAAAAAAATAGTAGTAAATATGTTAAAATATTAAGGTCGTGTT TATATTTAAGGAGGTATATT
Downstream 100 bases:
>100_bases GAGGAAATAAAATGAATTGTAAAATTATTATATTTAAGAAAATGATGACAATAATTTAACAATATTTTGTATATTTCTAA GCTTTTAAAAGTTAAAAATT
Product: putative helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 763; Mature: 762
Protein sequence:
>763_residues MSIEQEDFNIEEEKLNKTIEWIKEKIISLKEREEHIFNKINEINKEVKGSYNYEVEALQNSLQINRKNLNSYKSSISVPY FARIDFKEKLKDNESFYIGKVGLLDEEDKEEMVVDWRSPIADLYYSGVQGKASYEAPIGNIEGELLLKRKFIIKNKKLID AFDEGINEIILNFNGEDEQNGEKALIDEFLKINLEENRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIAL HRIAYLLYKYKNKITGEDIIILAPNKLFLDYISEVLPNLGVDKVKQSTFNKLSKEILNFNYEIIDKDKKLSKIIENKNSK ENKFITNSNKLKGSLVYKKMLDRYIKYLELNDMFIDDIKIDGYVIFTSREIIRLYKNDLKHLPLNKRKIEIGRYLKNKIE TKIQNVWNDIDKDYILKIREVRAKYEGEEERTNIIKLYEERDNKKEKIKLEAEEVLNKTIRKWLIDDVVDVYRDMYIDEE NLNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAALLYLKIKIDGVDNYKFAHMVIDEAQDYSPLELYVLKLLSKAR GYTIVGDLGQSIYYYKGIENWEKLIKEVYEEGEYIQLKQSYRSTVEIVDFANKVLRKQKNNLEPAKAVLRHGKHPKKIQY KDEKDFYEKLNSAIETIEEKKDKTIAIICKDYEQCESLKESLHLKEEKQWEIVTKDTEMLPKRIIIPSYITKGLEFDCSI IYDCSDENYRETELDKKILYVVLTRALHEEYIFYKDNITKLLI
Sequences:
>Translated_763_residues MSIEQEDFNIEEEKLNKTIEWIKEKIISLKEREEHIFNKINEINKEVKGSYNYEVEALQNSLQINRKNLNSYKSSISVPY FARIDFKEKLKDNESFYIGKVGLLDEEDKEEMVVDWRSPIADLYYSGVQGKASYEAPIGNIEGELLLKRKFIIKNKKLID AFDEGINEIILNFNGEDEQNGEKALIDEFLKINLEENRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIAL HRIAYLLYKYKNKITGEDIIILAPNKLFLDYISEVLPNLGVDKVKQSTFNKLSKEILNFNYEIIDKDKKLSKIIENKNSK ENKFITNSNKLKGSLVYKKMLDRYIKYLELNDMFIDDIKIDGYVIFTSREIIRLYKNDLKHLPLNKRKIEIGRYLKNKIE TKIQNVWNDIDKDYILKIREVRAKYEGEEERTNIIKLYEERDNKKEKIKLEAEEVLNKTIRKWLIDDVVDVYRDMYIDEE NLNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAALLYLKIKIDGVDNYKFAHMVIDEAQDYSPLELYVLKLLSKAR GYTIVGDLGQSIYYYKGIENWEKLIKEVYEEGEYIQLKQSYRSTVEIVDFANKVLRKQKNNLEPAKAVLRHGKHPKKIQY KDEKDFYEKLNSAIETIEEKKDKTIAIICKDYEQCESLKESLHLKEEKQWEIVTKDTEMLPKRIIIPSYITKGLEFDCSI IYDCSDENYRETELDKKILYVVLTRALHEEYIFYKDNITKLLI >Mature_762_residues SIEQEDFNIEEEKLNKTIEWIKEKIISLKEREEHIFNKINEINKEVKGSYNYEVEALQNSLQINRKNLNSYKSSISVPYF ARIDFKEKLKDNESFYIGKVGLLDEEDKEEMVVDWRSPIADLYYSGVQGKASYEAPIGNIEGELLLKRKFIIKNKKLIDA FDEGINEIILNFNGEDEQNGEKALIDEFLKINLEENRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIALH RIAYLLYKYKNKITGEDIIILAPNKLFLDYISEVLPNLGVDKVKQSTFNKLSKEILNFNYEIIDKDKKLSKIIENKNSKE NKFITNSNKLKGSLVYKKMLDRYIKYLELNDMFIDDIKIDGYVIFTSREIIRLYKNDLKHLPLNKRKIEIGRYLKNKIET KIQNVWNDIDKDYILKIREVRAKYEGEEERTNIIKLYEERDNKKEKIKLEAEEVLNKTIRKWLIDDVVDVYRDMYIDEEN LNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAALLYLKIKIDGVDNYKFAHMVIDEAQDYSPLELYVLKLLSKARG YTIVGDLGQSIYYYKGIENWEKLIKEVYEEGEYIQLKQSYRSTVEIVDFANKVLRKQKNNLEPAKAVLRHGKHPKKIQYK DEKDFYEKLNSAIETIEEKKDKTIAIICKDYEQCESLKESLHLKEEKQWEIVTKDTEMLPKRIIIPSYITKGLEFDCSII YDCSDENYRETELDKKILYVVLTRALHEEYIFYKDNITKLLI
Specific function: Catalyzes the unwinding of duplex DNA in the 3' to 5' direction; this reaction is dependent on the hydrolysis of ATP [H]
COG id: COG3973
COG function: function code R; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: 3000 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 90077; Mature: 89945
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIEQEDFNIEEEKLNKTIEWIKEKIISLKEREEHIFNKINEINKEVKGSYNYEVEALQN CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHH SLQINRKNLNSYKSSISVPYFARIDFKEKLKDNESFYIGKVGLLDEEDKEEMVVDWRSPI HHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH ADLYYSGVQGKASYEAPIGNIEGELLLKRKFIIKNKKLIDAFDEGINEIILNFNGEDEQN HHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHCCCHHHHHHHCCHHHEEEECCCCCCCC GEKALIDEFLKINLEENRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIAL CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCHHHHH HRIAYLLYKYKNKITGEDIIILAPNKLFLDYISEVLPNLGVDKVKQSTFNKLSKEILNFN HHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC YEIIDKDKKLSKIIENKNSKENKFITNSNKLKGSLVYKKMLDRYIKYLELNDMFIDDIKI CEEECCHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEE DGYVIFTSREIIRLYKNDLKHLPLNKRKIEIGRYLKNKIETKIQNVWNDIDKDYILKIRE CCEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VRAKYEGEEERTNIIKLYEERDNKKEKIKLEAEEVLNKTIRKWLIDDVVDVYRDMYIDEE HHHHHCCCHHHHHHHHHHHHHCCCHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NLNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAALLYLKIKIDGVDNYKFAHMVID CCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEEEEECCCCCCEEHHHHHH EAQDYSPLELYVLKLLSKARGYTIVGDLGQSIYYYKGIENWEKLIKEVYEEGEYIQLKQS CCCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCEEEEHHH YRSTVEIVDFANKVLRKQKNNLEPAKAVLRHGKHPKKIQYKDEKDFYEKLNSAIETIEEK HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH KDKTIAIICKDYEQCESLKESLHLKEEKQWEIVTKDTEMLPKRIIIPSYITKGLEFDCSI CCCEEEEEECCHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCHHHHHCCCCCCEEE IYDCSDENYRETELDKKILYVVLTRALHEEYIFYKDNITKLLI EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHCC >Mature Secondary Structure SIEQEDFNIEEEKLNKTIEWIKEKIISLKEREEHIFNKINEINKEVKGSYNYEVEALQN CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHH SLQINRKNLNSYKSSISVPYFARIDFKEKLKDNESFYIGKVGLLDEEDKEEMVVDWRSPI HHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH ADLYYSGVQGKASYEAPIGNIEGELLLKRKFIIKNKKLIDAFDEGINEIILNFNGEDEQN HHHHHCCCCCCCCCCCCCCCCCCCEEEHHHHHHCCCHHHHHHHCCHHHEEEECCCCCCCC GEKALIDEFLKINLEENRGNKLKDIVSTIQKEQNDIIRADMYKPLIIQGSAGSGKTTIAL CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCHHHHH HRIAYLLYKYKNKITGEDIIILAPNKLFLDYISEVLPNLGVDKVKQSTFNKLSKEILNFN HHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC YEIIDKDKKLSKIIENKNSKENKFITNSNKLKGSLVYKKMLDRYIKYLELNDMFIDDIKI CEEECCHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEE DGYVIFTSREIIRLYKNDLKHLPLNKRKIEIGRYLKNKIETKIQNVWNDIDKDYILKIRE CCEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VRAKYEGEEERTNIIKLYEERDNKKEKIKLEAEEVLNKTIRKWLIDDVVDVYRDMYIDEE HHHHHCCCHHHHHHHHHHHHHCCCHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NLNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAALLYLKIKIDGVDNYKFAHMVID CCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEEEEECCCCCCEEHHHHHH EAQDYSPLELYVLKLLSKARGYTIVGDLGQSIYYYKGIENWEKLIKEVYEEGEYIQLKQS CCCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCEEEEHHH YRSTVEIVDFANKVLRKQKNNLEPAKAVLRHGKHPKKIQYKDEKDFYEKLNSAIETIEEK HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH KDKTIAIICKDYEQCESLKESLHLKEEKQWEIVTKDTEMLPKRIIIPSYITKGLEFDCSI CCCEEEEEECCHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCHHHHHCCCCCCEEE IYDCSDENYRETELDKKILYVVLTRALHEEYIFYKDNITKLLI EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]