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The map label for this gene is yicO [C]

Identifier: 226950332

GI number: 226950332

Start: 3326250

End: 3327692

Strand: Reverse

Name: yicO [C]

Synonym: CLM_3297

Alternate gene names: 226950332

Gene position: 3327692-3326250 (Counterclockwise)

Preceding gene: 226950333

Following gene: 226950331

Centisome position: 80.08

GC content: 31.81

Gene sequence:

>1443_bases
ATGTATATGGAGAAGGAAAAAAATTATAAAGAACCTAATAATAAAGGTTTTTTGGACTCATTTTTTAAATTATCAGAGCG
TGGTAGTAATGTAAAAACTGAGGTTATAGCAGGTATTACTACATTTATTACTATGGCATATATAATATTTGTTAACCCAA
GCATATTAATGCAAGCAGGAATGAATTCTAAAGGGCTTGTTGGTGAAGCAGCTGTAAAGGCAGGGCTATCTGCTATAAAT
GATCCAGTAGTTGGAGCAGTATTTGCAGCTACTTGTATTTCAGCAGGTATAGGTACTTTAATAATGGCTCTTTACGCTAA
TGTACCTTTTGCACAAGCTCCAGGTATGGGGTTAAATGCCTTTTTTACTTTTAGTGTATGTTTAACTTTAGGATATACTT
GGCAACAAGCTTTAGCAGCAGTATTTATATCTGGATTGCTTTTTATAATTATAACATTAACATCTATAAGGGAAAAAATA
GTAGATGCTCTTCCACAAAATTTAAAATTAGCTATATCTGGTGGAATAGGATTATTTATAGCTTTAGTAGGATTTAAATC
TGGTGGAATAATAGTTGCAAATCCAGCAACACTTATAAGTTTTGGTGATTTTACAAATCCAGCAACTGTATTAACTATAA
TAGGTATTTGTATAACAGCTATTTTGATGGCTAAAAATGTTAAAGGTTCTATGTTAATAGCAATAGTTGTTACTACGCTA
ATAGGAATACCTTTAGGAGTAACAAAAGTAGCAGGAGTAAGTTTTATATCAGCACCACCATCTTTAGCACCAACTTTTTT
AAAATTAGATTTACCAGGACTTTTAGGTTTTGGAGGAGCGGGAATAGTTGGAGCTTTAATGAGCATATTAACAGTTGTTA
TATCTTTTAGTTTAGTAGACATGTTTGATACTATAGGAACTTTAGTTGGAACAGCAGAAAAAGCAGGAATGCTTGATGAA
AATGGGAAAATGGAAGATTTAGATAAAGCACTTTTAGCAGATGCAGTAGCTACTACAGCAGGAGCTTTAATTGGAACAAG
TACTGTTACTACTTATGTAGAATCTACAGCAGGAGTATCAGAAGGTGGAAGAACAGGTTTAACATCCTTTGTTACAGCTA
TTATGTTTTTATTAGCAATGTTTTTTAGTGGACTTGTAGGAATAGTTCCAGCAGAAGCTACAGCACCAGCACTTATAATA
GTAGGTGTATTAATGATGGGAGCTATAACAAAAATAGATTTTAATGATTTTACAGAAGCTCTACCAGCTTTCTTTACTAT
ATCAATAATGCCATTTAGTTATAGTATTGCTAATGGTATAGCAGCAGGAATAATATTTTATCCAATAGTTAAAGTATTTA
CAGGTAAAAGAAAAGAAGTTCATCCAATAGTTTATATATTGGCAGTATTATTCATAATTAGATTTACAATTCTTCCTAAA
TAA

Upstream 100 bases:

>100_bases
AAGTCCAGTTTATTTATTGGTATACTAAAGTTTTTGTTTTGGATTTACTCATATTTATGATCTGTAAACAAAAACTTTTT
TATTTAGGAGGAGTATTACA

Downstream 100 bases:

>100_bases
ATATAAATATAAATATAGCCTAAAGAACTATTAATAGTTCTTTAGGCTATATTTGAATTAAAGGAAGTTATATGTAATAC
TATTAAAGCAATATGGGGGA

Product: xanthine/uracil permease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MYMEKEKNYKEPNNKGFLDSFFKLSERGSNVKTEVIAGITTFITMAYIIFVNPSILMQAGMNSKGLVGEAAVKAGLSAIN
DPVVGAVFAATCISAGIGTLIMALYANVPFAQAPGMGLNAFFTFSVCLTLGYTWQQALAAVFISGLLFIIITLTSIREKI
VDALPQNLKLAISGGIGLFIALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITAILMAKNVKGSMLIAIVVTTL
IGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGAGIVGALMSILTVVISFSLVDMFDTIGTLVGTAEKAGMLDE
NGKMEDLDKALLADAVATTAGALIGTSTVTTYVESTAGVSEGGRTGLTSFVTAIMFLLAMFFSGLVGIVPAEATAPALII
VGVLMMGAITKIDFNDFTEALPAFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEVHPIVYILAVLFIIRFTILPK

Sequences:

>Translated_480_residues
MYMEKEKNYKEPNNKGFLDSFFKLSERGSNVKTEVIAGITTFITMAYIIFVNPSILMQAGMNSKGLVGEAAVKAGLSAIN
DPVVGAVFAATCISAGIGTLIMALYANVPFAQAPGMGLNAFFTFSVCLTLGYTWQQALAAVFISGLLFIIITLTSIREKI
VDALPQNLKLAISGGIGLFIALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITAILMAKNVKGSMLIAIVVTTL
IGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGAGIVGALMSILTVVISFSLVDMFDTIGTLVGTAEKAGMLDE
NGKMEDLDKALLADAVATTAGALIGTSTVTTYVESTAGVSEGGRTGLTSFVTAIMFLLAMFFSGLVGIVPAEATAPALII
VGVLMMGAITKIDFNDFTEALPAFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEVHPIVYILAVLFIIRFTILPK
>Mature_480_residues
MYMEKEKNYKEPNNKGFLDSFFKLSERGSNVKTEVIAGITTFITMAYIIFVNPSILMQAGMNSKGLVGEAAVKAGLSAIN
DPVVGAVFAATCISAGIGTLIMALYANVPFAQAPGMGLNAFFTFSVCLTLGYTWQQALAAVFISGLLFIIITLTSIREKI
VDALPQNLKLAISGGIGLFIALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITAILMAKNVKGSMLIAIVVTTL
IGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGAGIVGALMSILTVVISFSLVDMFDTIGTLVGTAEKAGMLDE
NGKMEDLDKALLADAVATTAGALIGTSTVTTYVESTAGVSEGGRTGLTSFVTAIMFLLAMFFSGLVGIVPAEATAPALII
VGVLMMGAITKIDFNDFTEALPAFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEVHPIVYILAVLFIIRFTILPK

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082309, Length=472, Percent_Identity=43.2203389830509, Blast_Score=376, Evalue=1e-105,
Organism=Escherichia coli, GI1790150, Length=470, Percent_Identity=42.9787234042553, Blast_Score=374, Evalue=1e-105,
Organism=Escherichia coli, GI1790499, Length=463, Percent_Identity=33.2613390928726, Blast_Score=229, Evalue=4e-61,
Organism=Escherichia coli, GI48994909, Length=472, Percent_Identity=31.3559322033898, Blast_Score=212, Evalue=4e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 50090; Mature: 50090

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYMEKEKNYKEPNNKGFLDSFFKLSERGSNVKTEVIAGITTFITMAYIIFVNPSILMQAG
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
MNSKGLVGEAAVKAGLSAINDPVVGAVFAATCISAGIGTLIMALYANVPFAQAPGMGLNA
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
FFTFSVCLTLGYTWQQALAAVFISGLLFIIITLTSIREKIVDALPQNLKLAISGGIGLFI
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
ALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITAILMAKNVKGSMLIAIVVTTL
HHHHCCCCCEEEECCHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGAGIVGALMSILTVVISFSLVD
HHCCCCHHHHHCCHHCCCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHH
MFDTIGTLVGTAEKAGMLDENGKMEDLDKALLADAVATTAGALIGTSTVTTYVESTAGVS
HHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EGGRTGLTSFVTAIMFLLAMFFSGLVGIVPAEATAPALIIVGVLMMGAITKIDFNDFTEA
CCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
LPAFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEVHPIVYILAVLFIIRFTILPK
HHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYMEKEKNYKEPNNKGFLDSFFKLSERGSNVKTEVIAGITTFITMAYIIFVNPSILMQAG
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
MNSKGLVGEAAVKAGLSAINDPVVGAVFAATCISAGIGTLIMALYANVPFAQAPGMGLNA
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
FFTFSVCLTLGYTWQQALAAVFISGLLFIIITLTSIREKIVDALPQNLKLAISGGIGLFI
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
ALVGFKSGGIIVANPATLISFGDFTNPATVLTIIGICITAILMAKNVKGSMLIAIVVTTL
HHHHCCCCCEEEECCHHEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IGIPLGVTKVAGVSFISAPPSLAPTFLKLDLPGLLGFGGAGIVGALMSILTVVISFSLVD
HHCCCCHHHHHCCHHCCCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHH
MFDTIGTLVGTAEKAGMLDENGKMEDLDKALLADAVATTAGALIGTSTVTTYVESTAGVS
HHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EGGRTGLTSFVTAIMFLLAMFFSGLVGIVPAEATAPALIIVGVLMMGAITKIDFNDFTEA
CCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
LPAFFTISIMPFSYSIANGIAAGIIFYPIVKVFTGKRKEVHPIVYILAVLFIIRFTILPK
HHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]