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The map label for this gene is ygaE [H]

Identifier: 226950086

GI number: 226950086

Start: 3037810

End: 3038700

Strand: Direct

Name: ygaE [H]

Synonym: CLM_3039

Alternate gene names: 226950086

Gene position: 3037810-3038700 (Clockwise)

Preceding gene: 226950048

Following gene: 226950174

Centisome position: 73.11

GC content: 24.92

Gene sequence:

>891_bases
ATGAAATCCATAGGTATGCGTAACATTAAAACTGCCTTAGCAGTTACTCTTGCTATATTAATATCAGATTTTTTTAAACT
AGATTCTCCTTTTTATGCAGCCATTGCTGCAGTTATTTCTATGCAAAATTCTGTTACAGGTTCCTATAAAGCTGGGAAAA
ATAGAATTCTAGGTACTGTAACCGGTGCACTTATTGGACTCACCTTTTCTAGTATTTCACCAAACAACCCTTTTTTATGT
GGGCTAGGTATTATAATTGTAATTTATATATGCAATTTATTAAAATGGGATAAATCTATAAGTATTGCTTGTATAGTTTT
TATAGGTATAATGATAAACCTTACAAATAAAACTCCTTTATATTATAGCATCCACAGAACTTTAGATACTTTTATAGGTA
TAATAGTAGCAGTACTTATAAATATGTTTATAAAGCCCCCAGCCTATGAAAAACAAATAATAGTTAGCTGTAAAACTATA
GTAAAACATTTTTCAAAAATACCAACAGAAAAAATTTACTTTCATCATAAAGTAGATATAAAAAAGCTTAAAAATCAAAT
AAATAATTTAGAAAATAATTTTAATGCTTATAAAAAGGAAATACTAAAGACTAAAAATTTAAATGAGGATTATATATCTG
TTTTAATAAAAATATTTAACCAAACCTATACCCACTTATCCTTTATTGATGCTATTAATAGTAAATGTGAGTTAAATAAT
AAAAATTATGAAAGATTCAAAAATTTGTATCATTTACCAGAAGAGTCTCATAAATATGATGAAAATGATTTGAATGTTGT
ATATAACTATCATGTATCTAAGATAATATATAACTTAGAAAGCTTAAAAAGGGAATATAAAGAAAATAAATTAAAACTTA
AGCATCCTTAA

Upstream 100 bases:

>100_bases
ATTTAATAAAGCACCTTAAATTTTAGTAAATCATCTTATTTATATATAAATTTCTGAAAACTAAAATAAAATTTATAGAT
TATACAAAGTGAGGTAGACT

Downstream 100 bases:

>100_bases
AGTTTATTAATTAAAATAAATAAGTACTTTTAATTAATAAATAGCTATAAGAATAAAAAATACTGGTATTCTAAATTATT
TTTTTAGATATTTATTCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MKSIGMRNIKTALAVTLAILISDFFKLDSPFYAAIAAVISMQNSVTGSYKAGKNRILGTVTGALIGLTFSSISPNNPFLC
GLGIIIVIYICNLLKWDKSISIACIVFIGIMINLTNKTPLYYSIHRTLDTFIGIIVAVLINMFIKPPAYEKQIIVSCKTI
VKHFSKIPTEKIYFHHKVDIKKLKNQINNLENNFNAYKKEILKTKNLNEDYISVLIKIFNQTYTHLSFIDAINSKCELNN
KNYERFKNLYHLPEESHKYDENDLNVVYNYHVSKIIYNLESLKREYKENKLKLKHP

Sequences:

>Translated_296_residues
MKSIGMRNIKTALAVTLAILISDFFKLDSPFYAAIAAVISMQNSVTGSYKAGKNRILGTVTGALIGLTFSSISPNNPFLC
GLGIIIVIYICNLLKWDKSISIACIVFIGIMINLTNKTPLYYSIHRTLDTFIGIIVAVLINMFIKPPAYEKQIIVSCKTI
VKHFSKIPTEKIYFHHKVDIKKLKNQINNLENNFNAYKKEILKTKNLNEDYISVLIKIFNQTYTHLSFIDAINSKCELNN
KNYERFKNLYHLPEESHKYDENDLNVVYNYHVSKIIYNLESLKREYKENKLKLKHP
>Mature_296_residues
MKSIGMRNIKTALAVTLAILISDFFKLDSPFYAAIAAVISMQNSVTGSYKAGKNRILGTVTGALIGLTFSSISPNNPFLC
GLGIIIVIYICNLLKWDKSISIACIVFIGIMINLTNKTPLYYSIHRTLDTFIGIIVAVLINMFIKPPAYEKQIIVSCKTI
VKHFSKIPTEKIYFHHKVDIKKLKNQINNLENNFNAYKKEILKTKNLNEDYISVLIKIFNQTYTHLSFIDAINSKCELNN
KNYERFKNLYHLPEESHKYDENDLNVVYNYHVSKIIYNLESLKREYKENKLKLKHP

Specific function: Unknown

COG id: COG4129

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0421 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010343 [H]

Pfam domain/function: PF06081 DUF939 [H]

EC number: NA

Molecular weight: Translated: 33983; Mature: 33983

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIGMRNIKTALAVTLAILISDFFKLDSPFYAAIAAVISMQNSVTGSYKAGKNRILGTV
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
TGALIGLTFSSISPNNPFLCGLGIIIVIYICNLLKWDKSISIACIVFIGIMINLTNKTPL
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCE
YYSIHRTLDTFIGIIVAVLINMFIKPPAYEKQIIVSCKTIVKHFSKIPTEKIYFHHKVDI
EEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHEEEEECHHH
KKLKNQINNLENNFNAYKKEILKTKNLNEDYISVLIKIFNQTYTHLSFIDAINSKCELNN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
KNYERFKNLYHLPEESHKYDENDLNVVYNYHVSKIIYNLESLKREYKENKLKLKHP
CHHHHHHHHHCCCCHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCEECCCC
>Mature Secondary Structure
MKSIGMRNIKTALAVTLAILISDFFKLDSPFYAAIAAVISMQNSVTGSYKAGKNRILGTV
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
TGALIGLTFSSISPNNPFLCGLGIIIVIYICNLLKWDKSISIACIVFIGIMINLTNKTPL
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCE
YYSIHRTLDTFIGIIVAVLINMFIKPPAYEKQIIVSCKTIVKHFSKIPTEKIYFHHKVDI
EEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHEEEEECHHH
KKLKNQINNLENNFNAYKKEILKTKNLNEDYISVLIKIFNQTYTHLSFIDAINSKCELNN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
KNYERFKNLYHLPEESHKYDENDLNVVYNYHVSKIIYNLESLKREYKENKLKLKHP
CHHHHHHHHHCCCCHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9202460; 9384377 [H]