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The map label for this gene is tnpR [H]

Identifier: 226949378

GI number: 226949378

Start: 2371195

End: 2371824

Strand: Reverse

Name: tnpR [H]

Synonym: CLM_2301

Alternate gene names: 226949378

Gene position: 2371824-2371195 (Counterclockwise)

Preceding gene: 226949379

Following gene: 226949377

Centisome position: 57.08

GC content: 34.29

Gene sequence:

>630_bases
ATGATATTTGGATATATGAGAATAAGCACTCAAAAAGAAAAGCAAACTACAGATCGTCAAAGAATTACTTTAGAGCAATA
TGCAGCAGCTAACAAATTTCTGTTTGATGAATTGATAGAGGAAAGAATATACGGAACGATCCAAGCAGATCATAGACTAC
AATATAATAATTTAAAGTCTAAACTTAGAAAAGATGATATATTAATAATTACGGACATTGATAGACTTGGAAGAAGTGCC
AACGATGTAATCATGGAGTTTAAAAAGCTTAAGGCTGATGGTATTAGAGTTATCGCCCTTGATACTCCATATTTAAACGA
ATGGGAGAAGGTTCAAGATAGCAGCTTATATAATATGATAGCTGATATATTTATTACTCTTAAGGCTCATATGGCCCAAC
AGGAGAGAGAAAAAACAGTGTCACGTATCAATCAAGGTTTGGCCGTTGCTAGGGCCAAGGGAAAGCAATTGGGGAGGCCC
AAGGCTGACTTACCAAAAGACTTTATTAAAGAGTACAATAAGTTTAAAGATGGTGGTTATGGTGATATGTCCGCTATGTC
ATTTGCTAAGATGTTGGGAATAGGCAGAAGTACATTATATAAATATATTAAATTATATGAAGAGGTCTAA

Upstream 100 bases:

>100_bases
AGGATAAATCGGTGTAAAATATGTCTATGAAACTTGAATGTGATTTTGTAGACACTTATAATAATATCATAGATAAATTA
ATGAAATGAGTTGATTAATT

Downstream 100 bases:

>100_bases
ATGGCCTCTTTTTCATTAGTTTAAATAACATATAATAATAAATGATGGATATATAGTAGGTTATTGAAATAAATGAAAGT
TAGGGGTATAATTTACCATA

Product: recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MIFGYMRISTQKEKQTTDRQRITLEQYAAANKFLFDELIEERIYGTIQADHRLQYNNLKSKLRKDDILIITDIDRLGRSA
NDVIMEFKKLKADGIRVIALDTPYLNEWEKVQDSSLYNMIADIFITLKAHMAQQEREKTVSRINQGLAVARAKGKQLGRP
KADLPKDFIKEYNKFKDGGYGDMSAMSFAKMLGIGRSTLYKYIKLYEEV

Sequences:

>Translated_209_residues
MIFGYMRISTQKEKQTTDRQRITLEQYAAANKFLFDELIEERIYGTIQADHRLQYNNLKSKLRKDDILIITDIDRLGRSA
NDVIMEFKKLKADGIRVIALDTPYLNEWEKVQDSSLYNMIADIFITLKAHMAQQEREKTVSRINQGLAVARAKGKQLGRP
KADLPKDFIKEYNKFKDGGYGDMSAMSFAKMLGIGRSTLYKYIKLYEEV
>Mature_209_residues
MIFGYMRISTQKEKQTTDRQRITLEQYAAANKFLFDELIEERIYGTIQADHRLQYNNLKSKLRKDDILIITDIDRLGRSA
NDVIMEFKKLKADGIRVIALDTPYLNEWEKVQDSSLYNMIADIFITLKAHMAQQEREKTVSRINQGLAVARAKGKQLGRP
KADLPKDFIKEYNKFKDGGYGDMSAMSFAKMLGIGRSTLYKYIKLYEEV

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787827, Length=159, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1787638, Length=159, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 24265; Mature: 24265

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFGYMRISTQKEKQTTDRQRITLEQYAAANKFLFDELIEERIYGTIQADHRLQYNNLKS
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
KLRKDDILIITDIDRLGRSANDVIMEFKKLKADGIRVIALDTPYLNEWEKVQDSSLYNMI
HHCCCCEEEEECHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
ADIFITLKAHMAQQEREKTVSRINQGLAVARAKGKQLGRPKADLPKDFIKEYNKFKDGGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC
GDMSAMSFAKMLGIGRSTLYKYIKLYEEV
CCHHHHHHHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MIFGYMRISTQKEKQTTDRQRITLEQYAAANKFLFDELIEERIYGTIQADHRLQYNNLKS
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
KLRKDDILIITDIDRLGRSANDVIMEFKKLKADGIRVIALDTPYLNEWEKVQDSSLYNMI
HHCCCCEEEEECHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
ADIFITLKAHMAQQEREKTVSRINQGLAVARAKGKQLGRPKADLPKDFIKEYNKFKDGGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC
GDMSAMSFAKMLGIGRSTLYKYIKLYEEV
CCHHHHHHHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027041 [H]