| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is hsdM [C]
Identifier: 226949373
GI number: 226949373
Start: 2362830
End: 2364545
Strand: Reverse
Name: hsdM [C]
Synonym: CLM_2296
Alternate gene names: 226949373
Gene position: 2364545-2362830 (Counterclockwise)
Preceding gene: 226949374
Following gene: 226949372
Centisome position: 56.9
GC content: 30.94
Gene sequence:
>1716_bases ATGAGCATAGGAAACAATATAAATGAAAAAGCCAATTTAATTTGGGCTATAGCCGATAAATTAACAGGAGTATATAAGCC ACATGAATATGGTGAGGTAATATTACCATTAACAGTAATAAGAAGATTTGATTGTGTACTAGCAGATACAAAAGAATCTG TTTTGAAGAAGAATGAACAAGTAGGAAACTTGCCAATGAAAGATGTTTTCTTATGTAAAGAAGCAGGGTATGATTTCTAT AATATTAGTAAATTTGATTTTCAAAAATTATTAAGTGATCCTGATGGCATAGAAGCTAATTTCAGAGTTTATATAAATGG ATTTTCTGAGAATGTCAGAAACATAATAGAGAAGTTTAATTTTGATAATCAGATAACAAGACTTGCTGAAAAGAACCTTT TATACATAGTTATTCAAGAGTTTGTTACACCTAATGCAGACTTACATCCAAGTAAGATATCTAATCTTGAAATGGGTTAT ATATTTGAAGAAATAATAAGAAGGTTCTCTGAAGCTCACAACGAAGATGCAGGACAGCATTATACTCCAAGAGAAGTTAT TGAGCTTATGGTAAATATCTTATTCTATAATGACAGTGAACTTTTAACAGGAAACATAGCTAAGACAATATATGACCCAG CTTGTGGAACTGGAGGTATGTTATCAGTAGCTGAAGATTATTTAAAGAAACTTAATAAGGATGCAGAGCTTATAGCATTC GGACAGGAAATAAATGACCAGACTTATGCTATATGTAAGGCAGATATGCTTATTAAAGGTGCAAATGCAGATAATATAAA GAATGGAAATACACTATCTGATGACCAGTTTAAAGAAGACAGATATGATTATATTTTATCAAATCCTCCTTTTGGCCGTG AATGGAAAAATGATAAGAAAGCAGTTGAAACAGAAGCAAAGCTTGGATTTGCAGGACGTTTTGGAGCAGGAGTACCAGCA GTGGGTGATGGACAAATGCTATTTTTAGAAACAGCTATAGCTAAAATGAAGCCTCAAGGTTCAAGAATAGCAATAATACA TAATGGTTCACCATTGTTTACAGGAGATGCAGGAAGTGGTCCATCTGAAATAAGAAGATATATTTTAGAAAATGACTTAC TTGAAGCTATAATAGCTCTTCCTAATGATATTTTCTATAACACTGGAATTGCTACTTATATATGGGTACTATCTAATAAG AAGCCTGATTATAGAAAGGGAAAAGTACAGCTTATAAATGCAAATGGATTATATGAAAAGAGAAGAAAATCTTTAGGAAA TAAGAGAAATGATATTCCTAAAGAATATATAGATGAAATTACTAAATTATATGGTGAATTTAAAAAAAGTGAAATAAGCA AGATATTTGATAATAAGGACTTTGGATATTCTAAAATAGTAGTTGAAAGACCTAAATTAAAAGAAGATGGTACACCAGAA TTAAAGAAAGGTAAGCCAGTTACTGACACATCACTTAGAGACACTGAAAATGTTCCATTAAAAGAAGATATAAATGAATA TTTCAAAAGAGAAGTAATACCTTTTGCTCCTGATGCATGGATAGATGAAAAGAAAACTAAAGTAGGATATGAAATTCCAT TCACAAGATATTTCTATAAATATGTACCACCAAAGCCAGCAAAAGAACTTGAAATGGAAATAAGAGAAATAGAAATGGAA CTAGATGGTGTATTGGAGGAAATATTCAATGACTAG
Upstream 100 bases:
>100_bases GTTGATATGTAGAAATTGTTGTAGGGAACTATCAAAAAATGATATTATAATTATAGTAAAATTAAATATATAATACATAG AAATTGAGGAGAATTACAAT
Downstream 100 bases:
>100_bases GAAGATGAAAGATAGTGGTGTTGAATGGATTGGGTATATGAATACTTGTTGGAAGACAATGCCTTTGAAATTTATTTTAA AAGAGCGTAGGCAAAAGAAT
Product: N-6 DNA methylase
Products: NA
Alternate protein names: M.MjaXP [H]
Number of amino acids: Translated: 571; Mature: 570
Protein sequence:
>571_residues MSIGNNINEKANLIWAIADKLTGVYKPHEYGEVILPLTVIRRFDCVLADTKESVLKKNEQVGNLPMKDVFLCKEAGYDFY NISKFDFQKLLSDPDGIEANFRVYINGFSENVRNIIEKFNFDNQITRLAEKNLLYIVIQEFVTPNADLHPSKISNLEMGY IFEEIIRRFSEAHNEDAGQHYTPREVIELMVNILFYNDSELLTGNIAKTIYDPACGTGGMLSVAEDYLKKLNKDAELIAF GQEINDQTYAICKADMLIKGANADNIKNGNTLSDDQFKEDRYDYILSNPPFGREWKNDKKAVETEAKLGFAGRFGAGVPA VGDGQMLFLETAIAKMKPQGSRIAIIHNGSPLFTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNK KPDYRKGKVQLINANGLYEKRRKSLGNKRNDIPKEYIDEITKLYGEFKKSEISKIFDNKDFGYSKIVVERPKLKEDGTPE LKKGKPVTDTSLRDTENVPLKEDINEYFKREVIPFAPDAWIDEKKTKVGYEIPFTRYFYKYVPPKPAKELEMEIREIEME LDGVLEEIFND
Sequences:
>Translated_571_residues MSIGNNINEKANLIWAIADKLTGVYKPHEYGEVILPLTVIRRFDCVLADTKESVLKKNEQVGNLPMKDVFLCKEAGYDFY NISKFDFQKLLSDPDGIEANFRVYINGFSENVRNIIEKFNFDNQITRLAEKNLLYIVIQEFVTPNADLHPSKISNLEMGY IFEEIIRRFSEAHNEDAGQHYTPREVIELMVNILFYNDSELLTGNIAKTIYDPACGTGGMLSVAEDYLKKLNKDAELIAF GQEINDQTYAICKADMLIKGANADNIKNGNTLSDDQFKEDRYDYILSNPPFGREWKNDKKAVETEAKLGFAGRFGAGVPA VGDGQMLFLETAIAKMKPQGSRIAIIHNGSPLFTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNK KPDYRKGKVQLINANGLYEKRRKSLGNKRNDIPKEYIDEITKLYGEFKKSEISKIFDNKDFGYSKIVVERPKLKEDGTPE LKKGKPVTDTSLRDTENVPLKEDINEYFKREVIPFAPDAWIDEKKTKVGYEIPFTRYFYKYVPPKPAKELEMEIREIEME LDGVLEEIFND >Mature_570_residues SIGNNINEKANLIWAIADKLTGVYKPHEYGEVILPLTVIRRFDCVLADTKESVLKKNEQVGNLPMKDVFLCKEAGYDFYN ISKFDFQKLLSDPDGIEANFRVYINGFSENVRNIIEKFNFDNQITRLAEKNLLYIVIQEFVTPNADLHPSKISNLEMGYI FEEIIRRFSEAHNEDAGQHYTPREVIELMVNILFYNDSELLTGNIAKTIYDPACGTGGMLSVAEDYLKKLNKDAELIAFG QEINDQTYAICKADMLIKGANADNIKNGNTLSDDQFKEDRYDYILSNPPFGREWKNDKKAVETEAKLGFAGRFGAGVPAV GDGQMLFLETAIAKMKPQGSRIAIIHNGSPLFTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKK PDYRKGKVQLINANGLYEKRRKSLGNKRNDIPKEYIDEITKLYGEFKKSEISKIFDNKDFGYSKIVVERPKLKEDGTPEL KKGKPVTDTSLRDTENVPLKEDINEYFKREVIPFAPDAWIDEKKTKVGYEIPFTRYFYKYVPPKPAKELEMEIREIEMEL DGVLEEIFND
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 65165; Mature: 65034
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIGNNINEKANLIWAIADKLTGVYKPHEYGEVILPLTVIRRFDCVLADTKESVLKKNEQ CCCCCCCCCHHHEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCHH VGNLPMKDVFLCKEAGYDFYNISKFDFQKLLSDPDGIEANFRVYINGFSENVRNIIEKFN CCCCCHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHCC FDNQITRLAEKNLLYIVIQEFVTPNADLHPSKISNLEMGYIFEEIIRRFSEAHNEDAGQH CCHHHHHHHHCCEEEEEEHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC YTPREVIELMVNILFYNDSELLTGNIAKTIYDPACGTGGMLSVAEDYLKKLNKDAELIAF CCHHHHHHHHHHHHEECCCCEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEE GQEINDQTYAICKADMLIKGANADNIKNGNTLSDDQFKEDRYDYILSNPPFGREWKNDKK CCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHCCCCEEECCCCCCCCCCCCHH AVETEAKLGFAGRFGAGVPAVGDGQMLFLETAIAKMKPQGSRIAIIHNGSPLFTGDAGSG HHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCC PSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKPDYRKGKVQLINANGLYEK HHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHEEEEECCCCCCCCCCCEEEEECCCCHHH RRKSLGNKRNDIPKEYIDEITKLYGEFKKSEISKIFDNKDFGYSKIVVERPKLKEDGTPE HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC LKKGKPVTDTSLRDTENVPLKEDINEYFKREVIPFAPDAWIDEKKTKVGYEIPFTRYFYK CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH YVPPKPAKELEMEIREIEMELDGVLEEIFND CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SIGNNINEKANLIWAIADKLTGVYKPHEYGEVILPLTVIRRFDCVLADTKESVLKKNEQ CCCCCCCCHHHEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCHH VGNLPMKDVFLCKEAGYDFYNISKFDFQKLLSDPDGIEANFRVYINGFSENVRNIIEKFN CCCCCHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHCC FDNQITRLAEKNLLYIVIQEFVTPNADLHPSKISNLEMGYIFEEIIRRFSEAHNEDAGQH CCHHHHHHHHCCEEEEEEHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC YTPREVIELMVNILFYNDSELLTGNIAKTIYDPACGTGGMLSVAEDYLKKLNKDAELIAF CCHHHHHHHHHHHHEECCCCEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEE GQEINDQTYAICKADMLIKGANADNIKNGNTLSDDQFKEDRYDYILSNPPFGREWKNDKK CCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHCCCCEEECCCCCCCCCCCCHH AVETEAKLGFAGRFGAGVPAVGDGQMLFLETAIAKMKPQGSRIAIIHNGSPLFTGDAGSG HHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCC PSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKPDYRKGKVQLINANGLYEK HHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHEEEEECCCCCCCCCCCEEEEECCCCHHH RRKSLGNKRNDIPKEYIDEITKLYGEFKKSEISKIFDNKDFGYSKIVVERPKLKEDGTPE HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC LKKGKPVTDTSLRDTENVPLKEDINEYFKREVIPFAPDAWIDEKKTKVGYEIPFTRYFYK CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH YVPPKPAKELEMEIREIEMELDGVLEEIFND CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]