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The map label for this gene is nusB [H]

Identifier: 226949184

GI number: 226949184

Start: 2160908

End: 2161339

Strand: Reverse

Name: nusB [H]

Synonym: CLM_2103

Alternate gene names: 226949184

Gene position: 2161339-2160908 (Counterclockwise)

Preceding gene: 226949185

Following gene: 226949183

Centisome position: 52.01

GC content: 25.69

Gene sequence:

>432_bases
ATGAATAGAAGAAAATCAAGAGAAGTAGCCATGAGATTATTATTTCAAACTACATTAAATGGAGAAAACTTAGAGGAGGC
CCTAGAAAATTTAAAGGATGTTAGAGAATCTGAAGAGATTACAAAAGAAAAAGATTATGAATCTGTAGATTTAAAAGATG
TGGATATAGATTATGTTAAAAGAATAATAAAAGGTATAGAAGAAAACAAAGAAGAAATAGATGAAAAAATAAAAGGAAAT
TTAAAAAATTGGAAAATAGAAAGACTATCTAAAGTAGATTTATCTATACTTAGATTATGTACATATGAATTGAAATTTGA
AGAGGATATACCAAATAGGGTATCTATAAATGAGGCTATAGAATTGGCTAAAAAATATTCAGGAGAAAAGTCTGCGACTT
TTATAAATGGTGTTTTAGGTAAAATGATTTAA

Upstream 100 bases:

>100_bases
GTAGAGAATCAATATTCATAATAATATAAAAAATGTAAATAATAGTAGTATTTAGAGTTAAAATTTACAAAACCAAACAT
AGAAAATTAGGGAGGAAAAT

Downstream 100 bases:

>100_bases
AATTAATAAATATTTAAAAAGTGAAGAGCTTAGCTTTTCACTTTTAATATTAATAAAAAGGAAGATGTTTATGCATATTA
AAACTCTTACAGTTTCTCAG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MNRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKRIIKGIEENKEEIDEKIKGN
LKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSINEAIELAKKYSGEKSATFINGVLGKMI

Sequences:

>Translated_143_residues
MNRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKRIIKGIEENKEEIDEKIKGN
LKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSINEAIELAKKYSGEKSATFINGVLGKMI
>Mature_143_residues
MNRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKRIIKGIEENKEEIDEKIKGN
LKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSINEAIELAKKYSGEKSATFINGVLGKMI

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=92, Percent_Identity=42.3913043478261, Blast_Score=77, Evalue=4e-16,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 16725; Mature: 16725

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVK
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
RIIKGIEENKEEIDEKIKGNLKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSINEAI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
ELAKKYSGEKSATFINGVLGKMI
HHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVK
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
RIIKGIEENKEEIDEKIKGNLKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSINEAI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
ELAKKYSGEKSATFINGVLGKMI
HHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA