| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
Click here to switch to the map view.
The map label for this gene is hypF [H]
Identifier: 226949077
GI number: 226949077
Start: 2056737
End: 2059175
Strand: Reverse
Name: hypF [H]
Synonym: CLM_1993
Alternate gene names: 226949077
Gene position: 2059175-2056737 (Counterclockwise)
Preceding gene: 226949078
Following gene: 226949076
Centisome position: 49.56
GC content: 25.87
Gene sequence:
>2439_bases ATGTATCTGACTGCTAAAGACAAATTCAATAGTAAAAAGCGATATTTAATAAAAATAGAAGGTATAGTACAAGGGGTAGG ATTTAGACCTTTTGTATATAATAGAGCAACAGAATTTAATTTAAAAGGATATGTAAAAAATAAAGGTGGTATGGTAGAAG TAGATCTAGAAGGATATAAAGAAAATATTAAAAGCTTTATACTAGAGTTAATTAAGAGCCCTCCTATTATGGCTAAAATA GAAGATTTAAAATGTAAATTTTTAAAACCTATCGATTATAAAGATTTTACTATTAAAAAAAGTTCTAATGAAAAAAATTC AGTAAAATTTATAAGCCCAGATGTAGCCCTTTGCAAAAACTGTATAAAAGAATTAAATTTAAGTACTAACAAAAGATATG AATATGGCTTTATTAATTGTACAGATTGTGGCCCTAGATACTCTATTATAAAATCATTACCTTATGATAGAGAAAATACA ACTATGAAAAAATTTACTATGTGTAATAGTTGTAAAGAAGAATATAATATTCCAGACAATAGACGATTTCATGCAGAGCC TAATTGTTGTAGTTTATGTGGCCCTTCATTAATATTATTGGACAATAAGAAACAAGTTATATGTACTAATAGCAAAAAGG AATATATAAATAATACATCTAATAATAATTATTATAATGAAAATAAAATTCATGAAAGTTATATAAATGTAGCTAATTTA AGTTATAAAAAACATCCCATTTATACTGCTATAGAACTAATAAAAAAAGGATACATTGTAGCTGTAAAAGGAATAGGAGG ATTTCATTTAGTTTGTAATGGTAAAAATAAAAAAGCTATAGAAAATTTAAGAATAAGAAAAAAAAGACCTCATAAACCTT TAGCTATAATGTGTAAGGATTTAAAAATCGTAAAAGAATTGTGCTATGTATCTAAATTAGAGGAACAGATTTTAGAGGGT ACTAAAAAGCCTATTTTGATTTTAAAGAAAAAGGCTACAAATATATTGCCAGATAATATATCACCTTTCAATAAACATTT AGGAGTAATGCTACCTTATAGTCCCCTACATTATTTACTATTTAAAGAAGGTTTAGATATAATAATAGCCACCAGTGGTA ATGTAAGTGGTAGACCTATGGAATACAAAAATTGTGAAGCTATAGAAAATTTGAAAGCTATAGCAGATTATTTTTTAATC CATAATAGAGATATTCATACTCCCATTGACGATTCTGTAGTAAAAGTTATAAATAAAAAAGAAAGTTTAATTAGAATAGG TCGTGGATATGCTCCTTATACTTTAAATATAAAAACTAAAAATGAATTATTAGCAAAGGGTGCAGAAGAAAAAAACACCT TTTGCCTTTCTCACAATGGATATATATACATGAGTCAATATATAGGAGATCTAAAAAATATAGATTGCTACAATAGACAT TTAAATACTATAGAACACCTACAAACTTTATTAGATACAAATCCTAAGATATCTATGGAAGATTTGCACCCAAATTTTAA TACTAATTATGAAAATAAAAATTATGATAGAATCATTAAAGTTCAACATCATCATGCCCATATGGTAAGTTGTATGGTAG AGCATTCGTTATTTGATAGGGTTATTGCTGTGGTATTTGATGGTACAGGCTTTGGGAAAGACAATAGTATATGGGGGGGA GAGTTTTTAATAGGTGACAGAACCTATTTTGAAAGAGTTGGACATTTAAAAAAAGTTAAAATCCAGGGAGGAGATAAATC AATAAAAGAACCATGGAGATGTGCCTTAAGCTATTTGTATTCTATAAATTATGAAGAGAGCTCTATAATTAAAAATGTAG AAGAAGAAAAAATTAAGATTATAAAGAAAGCTTTATACAATAATATAAATTGCTATACATCTTCTAGTATGGGAAGGTTT TTTGATGCAGTAACTTCATTAATAGGCATTAGAAATATGGTAAGTTATGATGGTCAAGCTCCTATAGAGTTAGAAAATAT CATAGATGAGCCTATATCTCTTTATTATAATTATAGTATTAATAAAATAGATAATGTTTTTCAAATAGATTATAAAGATA TAATTTTAGGAATAATTAAAGATTTAAAAGAAAATAAAGATTTGTCCACTATATCATCAAAGTTTCATAATACAATTATT GATTTTACTTGTAACTTGGTGTGTAAAATAAAAAAAACTTATGAAATGAAATATAAATTAGATAAAGTTGTATTAAGTGG AGGAGTTTTTCAAAATAATTACTTATTAAAAGGTGTATACAGAAACTTAAAGAATAATGGATTTAAAGTGTTTTTTAATG AAAAAGTTCCTATAAATGATGAAGGAATAAGCCTTGGTCAATTAACTATTGGTGACTCTATTATAGAAAGGGAGAAAATA AATGTGTATTGCAATACCAGGGAAAATTGTAAGTATTGA
Upstream 100 bases:
>100_bases ACAAAATGCAATAATAATTTAGTAGATGAAAATATAGAAATTGTTGTAGAAAGACAACCTATAGATGAGCAAACAGCTAT TATTAAATTATTAGAAGGTG
Downstream 100 bases:
>100_bases TGGCCACTATGCTATAGCAAATACTATGGGTATAGAAAGTGAAATAAATATAGCGCTTATAGAAAATCCATCTATCAATG ACTATGTTCTAATTCATGCA
Product: [NiFe] hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MYLTAKDKFNSKKRYLIKIEGIVQGVGFRPFVYNRATEFNLKGYVKNKGGMVEVDLEGYKENIKSFILELIKSPPIMAKI EDLKCKFLKPIDYKDFTIKKSSNEKNSVKFISPDVALCKNCIKELNLSTNKRYEYGFINCTDCGPRYSIIKSLPYDRENT TMKKFTMCNSCKEEYNIPDNRRFHAEPNCCSLCGPSLILLDNKKQVICTNSKKEYINNTSNNNYYNENKIHESYINVANL SYKKHPIYTAIELIKKGYIVAVKGIGGFHLVCNGKNKKAIENLRIRKKRPHKPLAIMCKDLKIVKELCYVSKLEEQILEG TKKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHYLLFKEGLDIIIATSGNVSGRPMEYKNCEAIENLKAIADYFLI HNRDIHTPIDDSVVKVINKKESLIRIGRGYAPYTLNIKTKNELLAKGAEEKNTFCLSHNGYIYMSQYIGDLKNIDCYNRH LNTIEHLQTLLDTNPKISMEDLHPNFNTNYENKNYDRIIKVQHHHAHMVSCMVEHSLFDRVIAVVFDGTGFGKDNSIWGG EFLIGDRTYFERVGHLKKVKIQGGDKSIKEPWRCALSYLYSINYEESSIIKNVEEEKIKIIKKALYNNINCYTSSSMGRF FDAVTSLIGIRNMVSYDGQAPIELENIIDEPISLYYNYSINKIDNVFQIDYKDIILGIIKDLKENKDLSTISSKFHNTII DFTCNLVCKIKKTYEMKYKLDKVVLSGGVFQNNYLLKGVYRNLKNNGFKVFFNEKVPINDEGISLGQLTIGDSIIEREKI NVYCNTRENCKY
Sequences:
>Translated_812_residues MYLTAKDKFNSKKRYLIKIEGIVQGVGFRPFVYNRATEFNLKGYVKNKGGMVEVDLEGYKENIKSFILELIKSPPIMAKI EDLKCKFLKPIDYKDFTIKKSSNEKNSVKFISPDVALCKNCIKELNLSTNKRYEYGFINCTDCGPRYSIIKSLPYDRENT TMKKFTMCNSCKEEYNIPDNRRFHAEPNCCSLCGPSLILLDNKKQVICTNSKKEYINNTSNNNYYNENKIHESYINVANL SYKKHPIYTAIELIKKGYIVAVKGIGGFHLVCNGKNKKAIENLRIRKKRPHKPLAIMCKDLKIVKELCYVSKLEEQILEG TKKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHYLLFKEGLDIIIATSGNVSGRPMEYKNCEAIENLKAIADYFLI HNRDIHTPIDDSVVKVINKKESLIRIGRGYAPYTLNIKTKNELLAKGAEEKNTFCLSHNGYIYMSQYIGDLKNIDCYNRH LNTIEHLQTLLDTNPKISMEDLHPNFNTNYENKNYDRIIKVQHHHAHMVSCMVEHSLFDRVIAVVFDGTGFGKDNSIWGG EFLIGDRTYFERVGHLKKVKIQGGDKSIKEPWRCALSYLYSINYEESSIIKNVEEEKIKIIKKALYNNINCYTSSSMGRF FDAVTSLIGIRNMVSYDGQAPIELENIIDEPISLYYNYSINKIDNVFQIDYKDIILGIIKDLKENKDLSTISSKFHNTII DFTCNLVCKIKKTYEMKYKLDKVVLSGGVFQNNYLLKGVYRNLKNNGFKVFFNEKVPINDEGISLGQLTIGDSIIEREKI NVYCNTRENCKY >Mature_812_residues MYLTAKDKFNSKKRYLIKIEGIVQGVGFRPFVYNRATEFNLKGYVKNKGGMVEVDLEGYKENIKSFILELIKSPPIMAKI EDLKCKFLKPIDYKDFTIKKSSNEKNSVKFISPDVALCKNCIKELNLSTNKRYEYGFINCTDCGPRYSIIKSLPYDRENT TMKKFTMCNSCKEEYNIPDNRRFHAEPNCCSLCGPSLILLDNKKQVICTNSKKEYINNTSNNNYYNENKIHESYINVANL SYKKHPIYTAIELIKKGYIVAVKGIGGFHLVCNGKNKKAIENLRIRKKRPHKPLAIMCKDLKIVKELCYVSKLEEQILEG TKKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHYLLFKEGLDIIIATSGNVSGRPMEYKNCEAIENLKAIADYFLI HNRDIHTPIDDSVVKVINKKESLIRIGRGYAPYTLNIKTKNELLAKGAEEKNTFCLSHNGYIYMSQYIGDLKNIDCYNRH LNTIEHLQTLLDTNPKISMEDLHPNFNTNYENKNYDRIIKVQHHHAHMVSCMVEHSLFDRVIAVVFDGTGFGKDNSIWGG EFLIGDRTYFERVGHLKKVKIQGGDKSIKEPWRCALSYLYSINYEESSIIKNVEEEKIKIIKKALYNNINCYTSSSMGRF FDAVTSLIGIRNMVSYDGQAPIELENIIDEPISLYYNYSINKIDNVFQIDYKDIILGIIKDLKENKDLSTISSKFHNTII DFTCNLVCKIKKTYEMKYKLDKVVLSGGVFQNNYLLKGVYRNLKNNGFKVFFNEKVPINDEGISLGQLTIGDSIIEREKI NVYCNTRENCKY
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=789, Percent_Identity=33.3333333333333, Blast_Score=410, Evalue=1e-115,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 93566; Mature: 93566
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYLTAKDKFNSKKRYLIKIEGIVQGVGFRPFVYNRATEFNLKGYVKNKGGMVEVDLEGYK CEEECCCCCCCCCEEEEEEEEECCCCCCCCEEECCCEEEEEEEEEECCCCEEEEEHHHHH ENIKSFILELIKSPPIMAKIEDLKCKFLKPIDYKDFTIKKSSNEKNSVKFISPDVALCKN HHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCEEEEECCCCCCCEEEECCCHHHHHH CIKELNLSTNKRYEYGFINCTDCGPRYSIIKSLPYDRENTTMKKFTMCNSCKEEYNIPDN HHHHCCCCCCCEEEECEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC RRFHAEPNCCSLCGPSLILLDNKKQVICTNSKKEYINNTSNNNYYNENKIHESYINVANL CEEECCCCHHHHCCCEEEEEECCCEEEEECCCHHHCCCCCCCCCCCCCCHHHHHHHHHHC SYKKHPIYTAIELIKKGYIVAVKGIGGFHLVCNGKNKKAIENLRIRKKRPHKPLAIMCKD CCCCCCHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHH LKIVKELCYVSKLEEQILEGTKKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHYLL HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHCCCEEECCCHHHHHH FKEGLDIIIATSGNVSGRPMEYKNCEAIENLKAIADYFLIHNRDIHTPIDDSVVKVINKK HHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCH ESLIRIGRGYAPYTLNIKTKNELLAKGAEEKNTFCLSHNGYIYMSQYIGDLKNIDCYNRH HHHHHHCCCCCCEEEEEECHHHHHHCCCCCCCCEEEECCCEEEEHHHHCCCCCCCHHHHH LNTIEHLQTLLDTNPKISMEDLHPNFNTNYENKNYDRIIKVQHHHAHMVSCMVEHSLFDR HHHHHHHHHHHCCCCCEEHHHCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHH VIAVVFDGTGFGKDNSIWGGEFLIGDRTYFERVGHLKKVKIQGGDKSIKEPWRCALSYLY EEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHH SINYEESSIIKNVEEEKIKIIKKALYNNINCYTSSSMGRFFDAVTSLIGIRNMVSYDGQA HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCC PIELENIIDEPISLYYNYSINKIDNVFQIDYKDIILGIIKDLKENKDLSTISSKFHNTII CEEHHHHHCCCEEEEEECCHHCCCCEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH DFTCNLVCKIKKTYEMKYKLDKVVLSGGVFQNNYLLKGVYRNLKNNGFKVFFNEKVPIND EEEEEEEEEEEHHHHHHHHHHHHEEECCEEECCCHHHHHHHHHCCCCEEEEECCCCCCCC EGISLGQLTIGDSIIEREKINVYCNTRENCKY CCCEEEEEECCCHHHCCCEEEEEECCCCCCCC >Mature Secondary Structure MYLTAKDKFNSKKRYLIKIEGIVQGVGFRPFVYNRATEFNLKGYVKNKGGMVEVDLEGYK CEEECCCCCCCCCEEEEEEEEECCCCCCCCEEECCCEEEEEEEEEECCCCEEEEEHHHHH ENIKSFILELIKSPPIMAKIEDLKCKFLKPIDYKDFTIKKSSNEKNSVKFISPDVALCKN HHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCEEEEECCCCCCCEEEECCCHHHHHH CIKELNLSTNKRYEYGFINCTDCGPRYSIIKSLPYDRENTTMKKFTMCNSCKEEYNIPDN HHHHCCCCCCCEEEECEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC RRFHAEPNCCSLCGPSLILLDNKKQVICTNSKKEYINNTSNNNYYNENKIHESYINVANL CEEECCCCHHHHCCCEEEEEECCCEEEEECCCHHHCCCCCCCCCCCCCCHHHHHHHHHHC SYKKHPIYTAIELIKKGYIVAVKGIGGFHLVCNGKNKKAIENLRIRKKRPHKPLAIMCKD CCCCCCHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHH LKIVKELCYVSKLEEQILEGTKKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHYLL HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHCCCEEECCCHHHHHH FKEGLDIIIATSGNVSGRPMEYKNCEAIENLKAIADYFLIHNRDIHTPIDDSVVKVINKK HHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCH ESLIRIGRGYAPYTLNIKTKNELLAKGAEEKNTFCLSHNGYIYMSQYIGDLKNIDCYNRH HHHHHHCCCCCCEEEEEECHHHHHHCCCCCCCCEEEECCCEEEEHHHHCCCCCCCHHHHH LNTIEHLQTLLDTNPKISMEDLHPNFNTNYENKNYDRIIKVQHHHAHMVSCMVEHSLFDR HHHHHHHHHHHCCCCCEEHHHCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHH VIAVVFDGTGFGKDNSIWGGEFLIGDRTYFERVGHLKKVKIQGGDKSIKEPWRCALSYLY EEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHH SINYEESSIIKNVEEEKIKIIKKALYNNINCYTSSSMGRFFDAVTSLIGIRNMVSYDGQA HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCC PIELENIIDEPISLYYNYSINKIDNVFQIDYKDIILGIIKDLKENKDLSTISSKFHNTII CEEHHHHHCCCEEEEEECCHHCCCCEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH DFTCNLVCKIKKTYEMKYKLDKVVLSGGVFQNNYLLKGVYRNLKNNGFKVFFNEKVPIND EEEEEEEEEEEHHHHHHHHHHHHEEECCEEECCCHHHHHHHHHCCCCEEEEECCCCCCCC EGISLGQLTIGDSIIEREKINVYCNTRENCKY CCCEEEEEECCCHHHCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]