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The map label for this gene is 226948953

Identifier: 226948953

GI number: 226948953

Start: 1906568

End: 1907140

Strand: Direct

Name: 226948953

Synonym: CLM_1867

Alternate gene names: NA

Gene position: 1906568-1907140 (Clockwise)

Preceding gene: 226948951

Following gene: 226948954

Centisome position: 45.88

GC content: 24.78

Gene sequence:

>573_bases
ATGCAAATAAATGAAGACAATTTTATTAACAGACTGAGGTATAAAGATCCAAAGGCTCTAGAATATGCTTTTGATACTTA
TTGTGACTATATATATAAAGTAGTATTTTCCGTATTTGGTTCAAAAGAATACTGTACTTATATAGACGAATGTATTAATG
ATATATTTATGTGTTTATGGGACAACATAGATAAATTTCATGAAGAAAAGGGAAGCTTTAAATATTGGTTTAAAGCTGTA
GCAAAATATAAGGCTATAAACTATAAGAAAAAAATTATTAAAAACACAAATATAGATTGTATTGAAAATTATATTTTTGA
ATCAAAAGAACAAGTAGAAAATTTGATTATATCCAAGGAAAACAAAGATGAGATTATAAATATGATAAAAGATTTAAAGG
GAATGGATAGGGAAATTTTTATAAGAAGATATTTAATACAGGAAGATATAGTTGATATAGCAAGTTATTTAGGAGTAAAT
AGAAGTGTAGTGGATAACAGACTCTCAAGAAGTAGAAAGATTTTAAAAGAAAAACTTGAAATATTAAAGAAGGGAGAGTG
TGTAAATGAATAA

Upstream 100 bases:

>100_bases
TATAAAAAGATTTGTATTAGTATATGAAAGGCCTTTTAACAGATATTTAATACAATGGAATATAATCTTAATGATTATAA
ATAATAGCCAGGAGGTAAAT

Downstream 100 bases:

>100_bases
AGAAATATTTGAAGAAAAGGATATATTGGAATTATTTAATTATATTAATATAGATAAAGATGAAGATGAAAATTTAGATT
TATATATGGATGATTTAAGA

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor Family; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MQINEDNFINRLRYKDPKALEYAFDTYCDYIYKVVFSVFGSKEYCTYIDECINDIFMCLWDNIDKFHEEKGSFKYWFKAV
AKYKAINYKKKIIKNTNIDCIENYIFESKEQVENLIISKENKDEIINMIKDLKGMDREIFIRRYLIQEDIVDIASYLGVN
RSVVDNRLSRSRKILKEKLEILKKGECVNE

Sequences:

>Translated_190_residues
MQINEDNFINRLRYKDPKALEYAFDTYCDYIYKVVFSVFGSKEYCTYIDECINDIFMCLWDNIDKFHEEKGSFKYWFKAV
AKYKAINYKKKIIKNTNIDCIENYIFESKEQVENLIISKENKDEIINMIKDLKGMDREIFIRRYLIQEDIVDIASYLGVN
RSVVDNRLSRSRKILKEKLEILKKGECVNE
>Mature_190_residues
MQINEDNFINRLRYKDPKALEYAFDTYCDYIYKVVFSVFGSKEYCTYIDECINDIFMCLWDNIDKFHEEKGSFKYWFKAV
AKYKAINYKKKIIKNTNIDCIENYIFESKEQVENLIISKENKDEIINMIKDLKGMDREIFIRRYLIQEDIVDIASYLGVN
RSVVDNRLSRSRKILKEKLEILKKGECVNE

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22854; Mature: 22854

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQINEDNFINRLRYKDPKALEYAFDTYCDYIYKVVFSVFGSKEYCTYIDECINDIFMCLW
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
DNIDKFHEEKGSFKYWFKAVAKYKAINYKKKIIKNTNIDCIENYIFESKEQVENLIISKE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCC
NKDEIINMIKDLKGMDREIFIRRYLIQEDIVDIASYLGVNRSVVDNRLSRSRKILKEKLE
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ILKKGECVNE
HHHCCCCCCC
>Mature Secondary Structure
MQINEDNFINRLRYKDPKALEYAFDTYCDYIYKVVFSVFGSKEYCTYIDECINDIFMCLW
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
DNIDKFHEEKGSFKYWFKAVAKYKAINYKKKIIKNTNIDCIENYIFESKEQVENLIISKE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCC
NKDEIINMIKDLKGMDREIFIRRYLIQEDIVDIASYLGVNRSVVDNRLSRSRKILKEKLE
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ILKKGECVNE
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA