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The map label for this gene is 226948935

Identifier: 226948935

GI number: 226948935

Start: 1883653

End: 1884444

Strand: Direct

Name: 226948935

Synonym: CLM_1848

Alternate gene names: NA

Gene position: 1883653-1884444 (Clockwise)

Preceding gene: 226948934

Following gene: 226948936

Centisome position: 45.33

GC content: 24.37

Gene sequence:

>792_bases
ATGAAGATTCTTACTTTGAATTGTCACTCTTGGCAAGAAGAAAAACAATTAGAAAAGATAAAATATTTAGCAAAGGTGAT
ATACGAAAATAATTATGATGTTATTGCTCTTCAAGAGGTTAGTCAAAGTATTAATAGTAAAATATTATTTGATAATATAA
AAGAGGATAACTTTGCTTTTATATTAATTAAAGAACTTGAAAAATTAGGCGAAAATAGATTTAAAATTTTGTGGGATTTT
GCTCATATAGGTTATGATAAATATGAAGAAGGTCTTGCTATACTAACTAAACATCCTATAAAAGAAAAAAAATCTTTTTA
TATTTCAAAAAGTAAAGATAAAAATTTTTGGAAAACTAGAAAGATAATAAAATGTAAAATAGATTATAATAATAATCCAA
TTTATTTTTATTCTTGTCATTTAGGTTGGTGGGATGATGAAGAGGAAGATCTTAAATCCCAAGTAAATAAATTAGTTCAG
GAACTGAAAGAAAAAGAAACCTGTATATTAATGGGAGATTATAATAATGATGCTTTTTTAAATAATAAAGGGTATGATTA
TCTTATAAATAAGAAACTTAAAGATATATATCATTTAGCAAGATCAAAAGACAATGGAGTAACTGCTATTGGTGATATTG
ATGGCTGGAAAGGAAATACAAAGGATATGAGGCTAGACCTTATATTATCTAATAAAAATTTAAAAGTAGAATATTGTAAA
GTTATATTTAACGGAATAAGAAAAGAAATAATCTCAGACCACTTTGGGGTTGAAGCAAAAATAGAAATTTAA

Upstream 100 bases:

>100_bases
ATTAGGTCTTATAGTAAAGGATAAAGGGGTTCAGGCTATATATGGACCAAAGGCAGATGTATTAAAATCAGATATTCAAG
ATATTTTAGGAGATTAATTT

Downstream 100 bases:

>100_bases
AAAAGTAAGAGGACAGTTCACAAAGTTTAAGTTATTTGAACTTAAAGTATGTGAACTGTCCATATTAATTTTCAGCTAGT
ATTACATGTAATATCAAATA

Product: endonuclease/exonuclease/phosphatase family protein

Products: NA

Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family Protein; Metal-Dependent Hydrolase; RgfB Protein; Exodeoxyribonuclease III; LOW QUALITY PROTEIN Metal-Dependent Hydrolase

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKILTLNCHSWQEEKQLEKIKYLAKVIYENNYDVIALQEVSQSINSKILFDNIKEDNFAFILIKELEKLGENRFKILWDF
AHIGYDKYEEGLAILTKHPIKEKKSFYISKSKDKNFWKTRKIIKCKIDYNNNPIYFYSCHLGWWDDEEEDLKSQVNKLVQ
ELKEKETCILMGDYNNDAFLNNKGYDYLINKKLKDIYHLARSKDNGVTAIGDIDGWKGNTKDMRLDLILSNKNLKVEYCK
VIFNGIRKEIISDHFGVEAKIEI

Sequences:

>Translated_263_residues
MKILTLNCHSWQEEKQLEKIKYLAKVIYENNYDVIALQEVSQSINSKILFDNIKEDNFAFILIKELEKLGENRFKILWDF
AHIGYDKYEEGLAILTKHPIKEKKSFYISKSKDKNFWKTRKIIKCKIDYNNNPIYFYSCHLGWWDDEEEDLKSQVNKLVQ
ELKEKETCILMGDYNNDAFLNNKGYDYLINKKLKDIYHLARSKDNGVTAIGDIDGWKGNTKDMRLDLILSNKNLKVEYCK
VIFNGIRKEIISDHFGVEAKIEI
>Mature_263_residues
MKILTLNCHSWQEEKQLEKIKYLAKVIYENNYDVIALQEVSQSINSKILFDNIKEDNFAFILIKELEKLGENRFKILWDF
AHIGYDKYEEGLAILTKHPIKEKKSFYISKSKDKNFWKTRKIIKCKIDYNNNPIYFYSCHLGWWDDEEEDLKSQVNKLVQ
ELKEKETCILMGDYNNDAFLNNKGYDYLINKKLKDIYHLARSKDNGVTAIGDIDGWKGNTKDMRLDLILSNKNLKVEYCK
VIFNGIRKEIISDHFGVEAKIEI

Specific function: Unknown

COG id: COG3568

COG function: function code R; Metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31130; Mature: 31130

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILTLNCHSWQEEKQLEKIKYLAKVIYENNYDVIALQEVSQSINSKILFDNIKEDNFAF
CEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCEEEEECCCCCCEEE
ILIKELEKLGENRFKILWDFAHIGYDKYEEGLAILTKHPIKEKKSFYISKSKDKNFWKTR
EEEHHHHHHCCCCEEEEEEHHHCCCHHHHCCEEEEECCCCCHHHCEEEECCCCCCHHHCC
KIIKCKIDYNNNPIYFYSCHLGWWDDEEEDLKSQVNKLVQELKEKETCILMGDYNNDAFL
EEEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEE
NNKGYDYLINKKLKDIYHLARSKDNGVTAIGDIDGWKGNTKDMRLDLILSNKNLKVEYCK
CCCCCCEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHH
VIFNGIRKEIISDHFGVEAKIEI
HHHHHHHHHHHHHHCCCEEEEEC
>Mature Secondary Structure
MKILTLNCHSWQEEKQLEKIKYLAKVIYENNYDVIALQEVSQSINSKILFDNIKEDNFAF
CEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCEEEEECCCCCCEEE
ILIKELEKLGENRFKILWDFAHIGYDKYEEGLAILTKHPIKEKKSFYISKSKDKNFWKTR
EEEHHHHHHCCCCEEEEEEHHHCCCHHHHCCEEEEECCCCCHHHCEEEECCCCCCHHHCC
KIIKCKIDYNNNPIYFYSCHLGWWDDEEEDLKSQVNKLVQELKEKETCILMGDYNNDAFL
EEEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEE
NNKGYDYLINKKLKDIYHLARSKDNGVTAIGDIDGWKGNTKDMRLDLILSNKNLKVEYCK
CCCCCCEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHH
VIFNGIRKEIISDHFGVEAKIEI
HHHHHHHHHHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA