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The map label for this gene is cpsA1 [H]

Identifier: 226948364

GI number: 226948364

Start: 1299291

End: 1300457

Strand: Direct

Name: cpsA1 [H]

Synonym: CLM_1247

Alternate gene names: 226948364

Gene position: 1299291-1300457 (Clockwise)

Preceding gene: 226948363

Following gene: 226948365

Centisome position: 31.27

GC content: 29.99

Gene sequence:

>1167_bases
ATGGATATTATAAATAAAATAGCAGATGAATATGAGAATTATGTAATAGATTTAAGAAGGTACTTTCATTCTTGTCCAGA
ATGCAGCTGGGATGAAAAGAATACATCTAAAAAAATTAAGAGTGAATTAAATAAATTTGGTATACCTTTTGAAAGTATAG
CTAATACAGGGATTTTAGTAAATATAAAAGGAAAAGAGACAGGTAAAACTATTTTATTAAGAGCAGATATGGATGCTATT
GAGATTAATGAATGTAATAATTTTGATTATGTATCTAAAAATAAAGGTATAATGCATGCTTGTGGTCATGATGGTCACAT
GGCAATGCTTTTGGGAGCTGCAATAGTTTTAAATAATATAAAGGATAAAATTAAAGGAAATATAAAGTTATTATTTCAAC
CTGCAGAAGAAGTTGGAGAAGGAGCAGCAATGTGTATAAAAGAAGGTGTATTAGATTCAGTAGATAATGCTTTTTCTATT
CATCTTTGGAGTAATGTTCCCTATGGTATGGTAGCTATTGAAGAAGGGCCAATTATGTCTTCGGCAGATGTGTTTAAAAT
AAAAATAAAAGGTAAGGGTGGCCATGGAGCAATGCCTCATGAGACCATAGATTCTGTATTAGCAGCTTCTTCCTTTGTAA
TGAGTTTGCAAAGTATAGTAAGCAGAGAAGTAGATCCTATAGAACCTTTAGTAATTTCTATAGGGAAATTACAGGCAGGG
AGTAGATTTAATGTTATAGCTAATGAGGCTATTATTGAAGGAACATCTAGGTATTTTAATATGTCATTTAGGGAAAAACT
ACCTAATATAATTGAAAGAATATTAAAAAATTCTACTGGTGTTTATAATGCTAAGGGAGAGTTAAGCTATAAATTTGCAA
CTCCTGTAACTATAAATGATGAAAAATCTGTTTATAGGGCAAAACAGGTTATAAATAAAATTTTAGGGGAAGATAAAATA
TATAAAATGAATAAAAATATGGTTACAGAGGACTTTGGATATTATCTAGAGAAAGTGCCTGGAGCCTTAGCATTTTTAGG
CGTGGAAAATGAAACTTTAGGCTCTAATTATCCTCAGCATCATGAAAAATATAACATAGATGAAAGGGCCTTAAAAATAG
GGGTAAAACTTTATTGTGAATATGCATTAGATTTTTTAAATTGTTAA

Upstream 100 bases:

>100_bases
TGAATTATGCAATTTTCTCACTTAAATGAATAAAGTTTTTATAATAAAATAAGTCTACTTAGCTATAAGCTACATAAGAC
ATAGATAATAGGTGATAATT

Downstream 100 bases:

>100_bases
GTATATTAAAAATCAAGTAATTTTAATAAAGTATAATAAGAGATTATTACAAACAGAGTTAATTCTAATATAGAAAATAT
AAAAAATACATGTAATAAAC

Product: amidohydrolase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MDIINKIADEYENYVIDLRRYFHSCPECSWDEKNTSKKIKSELNKFGIPFESIANTGILVNIKGKETGKTILLRADMDAI
EINECNNFDYVSKNKGIMHACGHDGHMAMLLGAAIVLNNIKDKIKGNIKLLFQPAEEVGEGAAMCIKEGVLDSVDNAFSI
HLWSNVPYGMVAIEEGPIMSSADVFKIKIKGKGGHGAMPHETIDSVLAASSFVMSLQSIVSREVDPIEPLVISIGKLQAG
SRFNVIANEAIIEGTSRYFNMSFREKLPNIIERILKNSTGVYNAKGELSYKFATPVTINDEKSVYRAKQVINKILGEDKI
YKMNKNMVTEDFGYYLEKVPGALAFLGVENETLGSNYPQHHEKYNIDERALKIGVKLYCEYALDFLNC

Sequences:

>Translated_388_residues
MDIINKIADEYENYVIDLRRYFHSCPECSWDEKNTSKKIKSELNKFGIPFESIANTGILVNIKGKETGKTILLRADMDAI
EINECNNFDYVSKNKGIMHACGHDGHMAMLLGAAIVLNNIKDKIKGNIKLLFQPAEEVGEGAAMCIKEGVLDSVDNAFSI
HLWSNVPYGMVAIEEGPIMSSADVFKIKIKGKGGHGAMPHETIDSVLAASSFVMSLQSIVSREVDPIEPLVISIGKLQAG
SRFNVIANEAIIEGTSRYFNMSFREKLPNIIERILKNSTGVYNAKGELSYKFATPVTINDEKSVYRAKQVINKILGEDKI
YKMNKNMVTEDFGYYLEKVPGALAFLGVENETLGSNYPQHHEKYNIDERALKIGVKLYCEYALDFLNC
>Mature_388_residues
MDIINKIADEYENYVIDLRRYFHSCPECSWDEKNTSKKIKSELNKFGIPFESIANTGILVNIKGKETGKTILLRADMDAI
EINECNNFDYVSKNKGIMHACGHDGHMAMLLGAAIVLNNIKDKIKGNIKLLFQPAEEVGEGAAMCIKEGVLDSVDNAFSI
HLWSNVPYGMVAIEEGPIMSSADVFKIKIKGKGGHGAMPHETIDSVLAASSFVMSLQSIVSREVDPIEPLVISIGKLQAG
SRFNVIANEAIIEGTSRYFNMSFREKLPNIIERILKNSTGVYNAKGELSYKFATPVTINDEKSVYRAKQVINKILGEDKI
YKMNKNMVTEDFGYYLEKVPGALAFLGVENETLGSNYPQHHEKYNIDERALKIGVKLYCEYALDFLNC

Specific function: Can release basic, acidic, aromatic, and, to a lesser extent, aliphatic amino acids [H]

COG id: COG1473

COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI87081880, Length=437, Percent_Identity=24.9427917620137, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017439
- InterPro:   IPR010168
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 43289; Mature: 43289

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIINKIADEYENYVIDLRRYFHSCPECSWDEKNTSKKIKSELNKFGIPFESIANTGILV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCEEE
NIKGKETGKTILLRADMDAIEINECNNFDYVSKNKGIMHACGHDGHMAMLLGAAIVLNNI
EEECCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
KDKIKGNIKLLFQPAEEVGEGAAMCIKEGVLDSVDNAFSIHLWSNVPYGMVAIEEGPIMS
HHHHCCCEEEEEECHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCCC
SADVFKIKIKGKGGHGAMPHETIDSVLAASSFVMSLQSIVSREVDPIEPLVISIGKLQAG
CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC
SRFNVIANEAIIEGTSRYFNMSFREKLPNIIERILKNSTGVYNAKGELSYKFATPVTIND
CCEEEEECHHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCEEECC
EKSVYRAKQVINKILGEDKIYKMNKNMVTEDFGYYLEKVPGALAFLGVENETLGSNYPQH
CHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCH
HEKYNIDERALKIGVKLYCEYALDFLNC
HHCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDIINKIADEYENYVIDLRRYFHSCPECSWDEKNTSKKIKSELNKFGIPFESIANTGILV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCEEE
NIKGKETGKTILLRADMDAIEINECNNFDYVSKNKGIMHACGHDGHMAMLLGAAIVLNNI
EEECCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
KDKIKGNIKLLFQPAEEVGEGAAMCIKEGVLDSVDNAFSIHLWSNVPYGMVAIEEGPIMS
HHHHCCCEEEEEECHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCCC
SADVFKIKIKGKGGHGAMPHETIDSVLAASSFVMSLQSIVSREVDPIEPLVISIGKLQAG
CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC
SRFNVIANEAIIEGTSRYFNMSFREKLPNIIERILKNSTGVYNAKGELSYKFATPVTIND
CCEEEEECHHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCEEECC
EKSVYRAKQVINKILGEDKIYKMNKNMVTEDFGYYLEKVPGALAFLGVENETLGSNYPQH
CHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCH
HEKYNIDERALKIGVKLYCEYALDFLNC
HHCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7559343; 11427726; 1597179 [H]