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The map label for this gene is tpn32 [H]

Identifier: 226948363

GI number: 226948363

Start: 1298250

End: 1299062

Strand: Direct

Name: tpn32 [H]

Synonym: CLM_1246

Alternate gene names: 226948363

Gene position: 1298250-1299062 (Clockwise)

Preceding gene: 226948362

Following gene: 226948364

Centisome position: 31.24

GC content: 29.89

Gene sequence:

>813_bases
ATGAAAAAGAAAATATTATCTATTGCTATAGCAACAACTTTAATTTTAGGATTAGTAGCATTAACAGGGTGTGGAAGTAG
TAAAGAAGAGGCAAAAGAAAAGAAAACAATTGTAGTTGGAGCAACGCCGGAACCTCATGCAGAAATTTTAAAAAAAGTTA
AACCTATTTTAGAGAAAAAAGGATACACTTTAGAAATAAAAGAGTTTACGGATTATGTTACTCCAAACACTGCATTGCAA
GATGGTGAAATAGATGCTAACTTTTATCAACACATACCATATTTAGAAGAGTTTAACAAAGAGAAGAAAACTGATTTATC
ATACACAGTTAAAGTTCATTTAGAACCTATGGGTGTATATTCTAAGACTATAAAGGATTTAAAAGAGCTAAAAAATGGAG
CAACTATATCAATACCAAGTGATCCAACTAACGGATCAAGGGCATTAAAATTATTAGAAAAAGAAGGCATTATTAAACTA
AAAGAAGGAGAACTTGTATCAAAGATGGATATTACAAAAAACCCTAAAAATATAAAAATAGAAGAATTAGATGCAGCTCA
ACTTCCAAGAACTTTAGGTGATGTGGATGCAGCAGTTATAAATACTAATTATGCTGTTCCAGCAAATTTAAATCCATTAA
AAGACGCTCTTGCCATTGAATCAAAGGATTCACCATATGCCAATGTTATTGTAGTTAAGACTGAAAATAAAAATGCAGAG
TATATAAAAGCTTTAGACGAGGCTATTAATTCAGAAGAAATAAAAAAATATATTGAAGAACAATATAAAGGAGCTATACT
TCCAGCTTTTTAA

Upstream 100 bases:

>100_bases
ATTTTATATTGACATTAAAAAAATATTAGGCTATTAAGAAATATTTCAAATATAGGATTAATCTTAACAGAACTTATAAA
ATAATAAGGAGGAATTATTA

Downstream 100 bases:

>100_bases
AAATTAGATTATAAAACATAAATAATAACTTGAGCAAATTGCATAATTAATAAGTTTCAAATTCACATACAACATCGTGT
TTTAAAAAATATATTAGAGC

Product: NLPA family lipoprotein

Products: NA

Alternate protein names: 29 kDa protein [H]

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MKKKILSIAIATTLILGLVALTGCGSSKEEAKEKKTIVVGATPEPHAEILKKVKPILEKKGYTLEIKEFTDYVTPNTALQ
DGEIDANFYQHIPYLEEFNKEKKTDLSYTVKVHLEPMGVYSKTIKDLKELKNGATISIPSDPTNGSRALKLLEKEGIIKL
KEGELVSKMDITKNPKNIKIEELDAAQLPRTLGDVDAAVINTNYAVPANLNPLKDALAIESKDSPYANVIVVKTENKNAE
YIKALDEAINSEEIKKYIEEQYKGAILPAF

Sequences:

>Translated_270_residues
MKKKILSIAIATTLILGLVALTGCGSSKEEAKEKKTIVVGATPEPHAEILKKVKPILEKKGYTLEIKEFTDYVTPNTALQ
DGEIDANFYQHIPYLEEFNKEKKTDLSYTVKVHLEPMGVYSKTIKDLKELKNGATISIPSDPTNGSRALKLLEKEGIIKL
KEGELVSKMDITKNPKNIKIEELDAAQLPRTLGDVDAAVINTNYAVPANLNPLKDALAIESKDSPYANVIVVKTENKNAE
YIKALDEAINSEEIKKYIEEQYKGAILPAF
>Mature_270_residues
MKKKILSIAIATTLILGLVALTGCGSSKEEAKEKKTIVVGATPEPHAEILKKVKPILEKKGYTLEIKEFTDYVTPNTALQ
DGEIDANFYQHIPYLEEFNKEKKTDLSYTVKVHLEPMGVYSKTIKDLKELKNGATISIPSDPTNGSRALKLLEKEGIIKL
KEGELVSKMDITKNPKNIKIEELDAAQLPRTLGDVDAAVINTNYAVPANLNPLKDALAIESKDSPYANVIVVKTENKNAE
YIKALDEAINSEEIKKYIEEQYKGAILPAF

Specific function: Unknown

COG id: COG1464

COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface antigen

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpA lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786396, Length=264, Percent_Identity=40.530303030303, Blast_Score=194, Evalue=5e-51,
Organism=Escherichia coli, GI1790093, Length=251, Percent_Identity=41.8326693227092, Blast_Score=191, Evalue=6e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004872 [H]

Pfam domain/function: PF03180 Lipoprotein_9 [H]

EC number: NA

Molecular weight: Translated: 29857; Mature: 29857

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKILSIAIATTLILGLVALTGCGSSKEEAKEKKTIVVGATPEPHAEILKKVKPILEKK
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHC
GYTLEIKEFTDYVTPNTALQDGEIDANFYQHIPYLEEFNKEKKTDLSYTVKVHLEPMGVY
CCEEEEHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHCCHHCCCCEEEEEEEEECCCHH
SKTIKDLKELKNGATISIPSDPTNGSRALKLLEKEGIIKLKEGELVSKMDITKNPKNIKI
HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCEE
EELDAAQLPRTLGDVDAAVINTNYAVPANLNPLKDALAIESKDSPYANVIVVKTENKNAE
EECCHHHCCHHHHCCCEEEEECCEECCCCCCHHHHHHEECCCCCCCEEEEEEEECCCCHH
YIKALDEAINSEEIKKYIEEQYKGAILPAF
HHHHHHHHCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKKKILSIAIATTLILGLVALTGCGSSKEEAKEKKTIVVGATPEPHAEILKKVKPILEKK
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHC
GYTLEIKEFTDYVTPNTALQDGEIDANFYQHIPYLEEFNKEKKTDLSYTVKVHLEPMGVY
CCEEEEHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHCCHHCCCCEEEEEEEEECCCHH
SKTIKDLKELKNGATISIPSDPTNGSRALKLLEKEGIIKLKEGELVSKMDITKNPKNIKI
HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCEE
EELDAAQLPRTLGDVDAAVINTNYAVPANLNPLKDALAIESKDSPYANVIVVKTENKNAE
EECCHHHCCHHHHCCCEEEEECCEECCCCCCHHHHHHEECCCCCCCEEEEEEEECCCCHH
YIKALDEAINSEEIKKYIEEQYKGAILPAF
HHHHHHHHCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]