Click here to switch to the map view.

The map label for this gene is ydfL [H]

Identifier: 226948292

GI number: 226948292

Start: 1215589

End: 1216410

Strand: Direct

Name: ydfL [H]

Synonym: CLM_1172

Alternate gene names: 226948292

Gene position: 1215589-1216410 (Clockwise)

Preceding gene: 226948291

Following gene: 226948293

Centisome position: 29.25

GC content: 23.97

Gene sequence:

>822_bases
ATGAAAGATTTATTTACAATTGGAGAAATATCAAAATTATTTAATATTAATATAAGGACATTAAGATATTATGATGAAAT
TGACTTATTTAAGCCAATATTTATAGATAAAGCTAATAGTTATAGATATTATTCAACAGATCAATTTGAACAATTAAATA
CAATAAAGTATTTAAAAGCCCTTGGGATGTCATTAGACACAATAAGTTATCATTTAAAGAAACGTAGTGTTGGTAATATT
ATTGAGTTATTTGAAAAACAGAAAAAAATTACGGAAGAAAAGATAAAAGAACTAGAACTTACAAAGCAAAAAATTCAAAA
TAGAATAAATCAAATTAACTACGCAAGACAATATCATAATTTGGATGTAGTTCAAGAGAGTAGACTTCAAGAGAGAAGGA
TTGTTTTATTAAAAGAAAAAATAAAATCAAACAATGATTTGGAATTATCCATTAGACATTTAGAAAATAAGGCTAATAAA
AATGCTTCTATTTTTAATGGAAAAATAGGAGTATCAATTTCTATAGATAAATTGAAGAATAAAGAATTTGGTGAATATGA
TTCTATTTTTTTATTCACAGAGGGAGAAAGATATAACAAAAATCTGATAAAAGTGTTGCCAGAAGGGACTTATGCTAGTA
TTCGCTTTACTGGAACTCACAAAAATTCTCCAATATATTATGATGAGCTTTTAAAATACATTGAAGAAAAAGGATACACA
ATTATTGATGATTCAATAGAAATAACACTAATTGATTTTGGGTTAACTACTGAAAAATCAGAATTTGTAACTGAAATTCA
AATATTAATAAATAAATCTTGA

Upstream 100 bases:

>100_bases
AAAAATATTAAATTAACTAAATGAATTTGATATAATCTAAATATGCATAAATCATCTATTAATATAAAATTTATTTTTTT
ATAATTAGGAGATAAACTAA

Downstream 100 bases:

>100_bases
CACTCTAGTAACTAGAGACTTTATAATTTATAAAATAGATAAATTGTTAATCTATAATAACAATAGTGAAATCCATTTAA
TTATTATACTTAGTGTTTTA

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKDLFTIGEISKLFNINIRTLRYYDEIDLFKPIFIDKANSYRYYSTDQFEQLNTIKYLKALGMSLDTISYHLKKRSVGNI
IELFEKQKKITEEKIKELELTKQKIQNRINQINYARQYHNLDVVQESRLQERRIVLLKEKIKSNNDLELSIRHLENKANK
NASIFNGKIGVSISIDKLKNKEFGEYDSIFLFTEGERYNKNLIKVLPEGTYASIRFTGTHKNSPIYYDELLKYIEEKGYT
IIDDSIEITLIDFGLTTEKSEFVTEIQILINKS

Sequences:

>Translated_273_residues
MKDLFTIGEISKLFNINIRTLRYYDEIDLFKPIFIDKANSYRYYSTDQFEQLNTIKYLKALGMSLDTISYHLKKRSVGNI
IELFEKQKKITEEKIKELELTKQKIQNRINQINYARQYHNLDVVQESRLQERRIVLLKEKIKSNNDLELSIRHLENKANK
NASIFNGKIGVSISIDKLKNKEFGEYDSIFLFTEGERYNKNLIKVLPEGTYASIRFTGTHKNSPIYYDELLKYIEEKGYT
IIDDSIEITLIDFGLTTEKSEFVTEIQILINKS
>Mature_273_residues
MKDLFTIGEISKLFNINIRTLRYYDEIDLFKPIFIDKANSYRYYSTDQFEQLNTIKYLKALGMSLDTISYHLKKRSVGNI
IELFEKQKKITEEKIKELELTKQKIQNRINQINYARQYHNLDVVQESRLQERRIVLLKEKIKSNNDLELSIRHLENKANK
NASIFNGKIGVSISIDKLKNKEFGEYDSIFLFTEGERYNKNLIKVLPEGTYASIRFTGTHKNSPIYYDELLKYIEEKGYT
IIDDSIEITLIDFGLTTEKSEFVTEIQILINKS

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 32199; Mature: 32199

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLFTIGEISKLFNINIRTLRYYDEIDLFKPIFIDKANSYRYYSTDQFEQLNTIKYLKA
CCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHHHH
LGMSLDTISYHLKKRSVGNIIELFEKQKKITEEKIKELELTKQKIQNRINQINYARQYHN
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDVVQESRLQERRIVLLKEKIKSNNDLELSIRHLENKANKNASIFNGKIGVSISIDKLKN
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCEEEECEEEEEEEHHHCCC
KEFGEYDSIFLFTEGERYNKNLIKVLPEGTYASIRFTGTHKNSPIYYDELLKYIEEKGYT
CCCCCCCCEEEEECCCCCCCCEEEEECCCCEEEEEEEECCCCCCEEHHHHHHHHHHCCCE
IIDDSIEITLIDFGLTTEKSEFVTEIQILINKS
EEECCEEEEEEEECCCCCHHHHHEEEEEEEECC
>Mature Secondary Structure
MKDLFTIGEISKLFNINIRTLRYYDEIDLFKPIFIDKANSYRYYSTDQFEQLNTIKYLKA
CCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHHHH
LGMSLDTISYHLKKRSVGNIIELFEKQKKITEEKIKELELTKQKIQNRINQINYARQYHN
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDVVQESRLQERRIVLLKEKIKSNNDLELSIRHLENKANKNASIFNGKIGVSISIDKLKN
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCEEEECEEEEEEEHHHCCC
KEFGEYDSIFLFTEGERYNKNLIKVLPEGTYASIRFTGTHKNSPIYYDELLKYIEEKGYT
CCCCCCCCEEEEECCCCCCCCEEEEECCCCEEEEEEEECCCCCCEEHHHHHHHHHHCCCE
IIDDSIEITLIDFGLTTEKSEFVTEIQILINKS
EEECCEEEEEEEECCCCCHHHHHEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]