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The map label for this gene is oxdD [H]

Identifier: 226948135

GI number: 226948135

Start: 1060406

End: 1061614

Strand: Reverse

Name: oxdD [H]

Synonym: CLM_1003

Alternate gene names: 226948135

Gene position: 1061614-1060406 (Counterclockwise)

Preceding gene: 226948136

Following gene: 226948132

Centisome position: 25.55

GC content: 43.51

Gene sequence:

>1209_bases
GTGTATATTCAAAATCAATATCAAAACTTGTGCAATCTACTTATGTCCGGATGTATACCACAGCCTATAAGAGACGGAGC
TGGTGCCACTGATATAGGCCCACGCGATATTCTTAGAGATCTCGAAAATCCTGACATGCTTGTTCCACCTTCCACGGATA
CCGGCTTGATTCCTAATTTAAAATTTTCTTTTTCTGATACTAATATGACAATAAGACCGGGTGGGTGGTCTCGAGAGATT
ACTGTCAGGGAACTACCGATAGCGACCACAATGGCGGGAGTTAATATGCGATTGACGCCAGGTGGCGTGCGTGAGGTTCA
CTGGCATCAGCAGTCAGAATGGTCCTATATGCTAAAAGGGAGTGCCCGTATAACAGCGGTAGACGATCGTGGACGAAATT
TTATTGCCGATATTGGTCCTGGTGATCTTTGGTTCTTTCCACCGCTTTTCCCACATTCTATTCAAGGTTTGGAAGAGGGC
TGCGAATTTTTGCTTCTTTTCGATGATGGAAACTTTTCTGACCTGCGAACATTCTCTCTCTCTGAATTTTTCGCCCATTA
TCCCAAGGATGTGCTGGCAGCTAATTTTGGTGTGACGAAAAACTGCTTCAACTGTCTCCCAGAAGGTCAAGTATATATTT
ATCAGGATACTATCCCGGGCCCTTTGGAAAGTGAAGCAATCGAATCCCCATATGGGACTATTCCCCAAAGCTACAAACAT
AGCTTATTAGCCCAAAAACCAATGACAACACCTGGTGGAAGCGTACGTATTGCAGATACTTCTAACTTTCCAGTTGCCAA
AACCACTGCTGCGGCTTTGGTGGAGATCAAACCCGGTGGAATGAGAGAAATTCATTGGCATCCTAACGACGAGTTTCAAT
ATTTCCTTACCGGGCAATCACGTATGACAGTATTCGCGGATACCGGTGCTTCTCGTACATTTGATTATAGAGCTGGTGAT
GTAGGATATGTACCCACTGGCTATGGGCATTATGTTCAAAATATCGGTAATGAAACGGTGTGGTTTTTAGAAGCATTTAG
GAGCGATCGATTTAAGAGCATATCACTAAGCCAAATGATGGCTATTACACCTCAGCAGCTTATTGAAAGTAATTTGAATG
TGGGACCTGGATTTTTAAATGCGTTGAGTAGGAGTAAGTTCCAATGCTCAGTTGGTCCATGCTTCCACAAGACAGAATGT
TCAGACTAA

Upstream 100 bases:

>100_bases
TAAGCACACTATATTTACTCTTTTCATAAAATATAGAGTAATTGCAACTAATTTGTAGAAACACTACTATATGCATTAAT
AATGATTTGGAGGAATTTTT

Downstream 100 bases:

>100_bases
AGCTTGGTAAAGTAAAACATAAATCCTATTTTATAAATAGCTCAGATGATAACGAAGGCTAGGGATTGCTAGAAAGAAAA
AACTTCGTAAATTTTAGTAT

Product: oxalate decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MYIQNQYQNLCNLLMSGCIPQPIRDGAGATDIGPRDILRDLENPDMLVPPSTDTGLIPNLKFSFSDTNMTIRPGGWSREI
TVRELPIATTMAGVNMRLTPGGVREVHWHQQSEWSYMLKGSARITAVDDRGRNFIADIGPGDLWFFPPLFPHSIQGLEEG
CEFLLLFDDGNFSDLRTFSLSEFFAHYPKDVLAANFGVTKNCFNCLPEGQVYIYQDTIPGPLESEAIESPYGTIPQSYKH
SLLAQKPMTTPGGSVRIADTSNFPVAKTTAAALVEIKPGGMREIHWHPNDEFQYFLTGQSRMTVFADTGASRTFDYRAGD
VGYVPTGYGHYVQNIGNETVWFLEAFRSDRFKSISLSQMMAITPQQLIESNLNVGPGFLNALSRSKFQCSVGPCFHKTEC
SD

Sequences:

>Translated_402_residues
MYIQNQYQNLCNLLMSGCIPQPIRDGAGATDIGPRDILRDLENPDMLVPPSTDTGLIPNLKFSFSDTNMTIRPGGWSREI
TVRELPIATTMAGVNMRLTPGGVREVHWHQQSEWSYMLKGSARITAVDDRGRNFIADIGPGDLWFFPPLFPHSIQGLEEG
CEFLLLFDDGNFSDLRTFSLSEFFAHYPKDVLAANFGVTKNCFNCLPEGQVYIYQDTIPGPLESEAIESPYGTIPQSYKH
SLLAQKPMTTPGGSVRIADTSNFPVAKTTAAALVEIKPGGMREIHWHPNDEFQYFLTGQSRMTVFADTGASRTFDYRAGD
VGYVPTGYGHYVQNIGNETVWFLEAFRSDRFKSISLSQMMAITPQQLIESNLNVGPGFLNALSRSKFQCSVGPCFHKTEC
SD
>Mature_402_residues
MYIQNQYQNLCNLLMSGCIPQPIRDGAGATDIGPRDILRDLENPDMLVPPSTDTGLIPNLKFSFSDTNMTIRPGGWSREI
TVRELPIATTMAGVNMRLTPGGVREVHWHQQSEWSYMLKGSARITAVDDRGRNFIADIGPGDLWFFPPLFPHSIQGLEEG
CEFLLLFDDGNFSDLRTFSLSEFFAHYPKDVLAANFGVTKNCFNCLPEGQVYIYQDTIPGPLESEAIESPYGTIPQSYKH
SLLAQKPMTTPGGSVRIADTSNFPVAKTTAAALVEIKPGGMREIHWHPNDEFQYFLTGQSRMTVFADTGASRTFDYRAGD
VGYVPTGYGHYVQNIGNETVWFLEAFRSDRFKSISLSQMMAITPQQLIESNLNVGPGFLNALSRSKFQCSVGPCFHKTEC
SD

Specific function: Converts oxalate to formate and CO(2) [H]

COG id: COG2140

COG function: function code GR; Thermophilic glucose-6-phosphate isomerase and related metalloenzymes

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis oxdC [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017774
- InterPro:   IPR006045
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00190 Cupin_1 [H]

EC number: =4.1.1.2 [H]

Molecular weight: Translated: 44731; Mature: 44731

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIQNQYQNLCNLLMSGCIPQPIRDGAGATDIGPRDILRDLENPDMLVPPSTDTGLIPNL
CCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCE
KFSFSDTNMTIRPGGWSREITVRELPIATTMAGVNMRLTPGGVREVHWHQQSEWSYMLKG
EEEECCCEEEECCCCCCCEEEEEECCEEEEECCCEEEECCCCCEEEECCCCCCCEEEEEC
SARITAVDDRGRNFIADIGPGDLWFFPPLFPHSIQGLEEGCEFLLLFDDGNFSDLRTFSL
CEEEEEECCCCCEEEEECCCCCEEECCCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHH
SEFFAHYPKDVLAANFGVTKNCFNCLPEGQVYIYQDTIPGPLESEAIESPYGTIPQSYKH
HHHHHHCCHHHHHHCCCCCHHHHHCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCHHHHH
SLLAQKPMTTPGGSVRIADTSNFPVAKTTAAALVEIKPGGMREIHWHPNDEFQYFLTGQS
HHHHCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCC
RMTVFADTGASRTFDYRAGDVGYVPTGYGHYVQNIGNETVWFLEAFRSDRFKSISLSQMM
EEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHCCCCCEEHHHHHHCCCCCEECHHHHH
AITPQQLIESNLNVGPGFLNALSRSKFQCSVGPCFHKTECSD
HCCHHHHHHCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure
MYIQNQYQNLCNLLMSGCIPQPIRDGAGATDIGPRDILRDLENPDMLVPPSTDTGLIPNL
CCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCE
KFSFSDTNMTIRPGGWSREITVRELPIATTMAGVNMRLTPGGVREVHWHQQSEWSYMLKG
EEEECCCEEEECCCCCCCEEEEEECCEEEEECCCEEEECCCCCEEEECCCCCCCEEEEEC
SARITAVDDRGRNFIADIGPGDLWFFPPLFPHSIQGLEEGCEFLLLFDDGNFSDLRTFSL
CEEEEEECCCCCEEEEECCCCCEEECCCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHH
SEFFAHYPKDVLAANFGVTKNCFNCLPEGQVYIYQDTIPGPLESEAIESPYGTIPQSYKH
HHHHHHCCHHHHHHCCCCCHHHHHCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCHHHHH
SLLAQKPMTTPGGSVRIADTSNFPVAKTTAAALVEIKPGGMREIHWHPNDEFQYFLTGQS
HHHHCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCC
RMTVFADTGASRTFDYRAGDVGYVPTGYGHYVQNIGNETVWFLEAFRSDRFKSISLSQMM
EEEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHCCCCCEEHHHHHHCCCCCEECHHHHH
AITPQQLIESNLNVGPGFLNALSRSKFQCSVGPCFHKTECSD
HCCHHHHHHCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 11546787 [H]