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The map label for this gene is yfbE [C]

Identifier: 226948111

GI number: 226948111

Start: 1035712

End: 1036887

Strand: Direct

Name: yfbE [C]

Synonym: CLM_0976

Alternate gene names: 226948111

Gene position: 1035712-1036887 (Clockwise)

Preceding gene: 226948110

Following gene: 226948112

Centisome position: 24.93

GC content: 30.78

Gene sequence:

>1176_bases
ATGAAAAAGATACCATTTTCACCACCAGATATTACAGAAAGAGAGATAGATGCAGTAGTAGAGGTGCTAAAATCTGGTTG
GATAACTTCAGGTCCTAAAACACAACAATTTGAAAATAATTTAGCAGAGTATTGTGATACAAATAAATCTGTAGCAGTAT
CTAGTGCTTCAGCAGGATTAGAGCTTATATTAAAAGATTTTGATATAAAAGAAGGAGATGAAGTAATAACTACTCCTTAT
ACTTATACAGCTACAGCAAGTGTATGTTTGCATAGAGGTATAAAACCAAAATTTGTAGATGTAGCAAAAGATAGTTTTTT
AATAGATATAGAAAAATTAGCAGATGCAATAACACCAAAAACTAAAGCTATATATACAGTAGATTTTGGAGGAGTGCCTG
TAGATTACGATGCAATTAAGGAAGTTTTAAAGGCTAAAGGTCGTGAAGATATAATTTTAGTATCTGATTCAGCCCATTCT
TTAGGTGCTATTTATAAAGGAAAAAAAGTTGGAGGCCAAGTAGATTTCCATGTATTTTCTTTCCATGCAGTAAAAAACCT
TACAACAGCAGAAGGTGGAGCAATAACTTTTGAAAATAACAACTTTAAAGGAAGAGAAGATTTACACAAAGATTTTAAAT
TACAATCTCTACATGGGCAATCAAAGGATGCTTTATCAAAGATGAAAGCCGGAGCTTGGGAATATGATATAGTAACAGAT
GGACATAAATGCAATATGACAGATATGGGGTCAGCTATAGGTTTAGTTCAGCTTACAAGATATGAAGAAATGCTAAGAAA
AAGAGAAGCTATATTTGATACTTATACAAAGGTGTTAGCTGAAAAAGATTGGGCTATAATACCATTTAAAAAAGATGAAA
CTAAAGAAACTTCATATCATTTATACCCATTAAGAATAAAAGGATTTGGGGAAGCTGAAAGAAATGAAGTAATAAAAATA
TTAGCTGAAAAAGATATAGCAACAAATGTACACTTTAAACCACTACCAATGTTTACATTATATAAAAATTTAGGATACAA
TATAGAAGACTATCCAAATGCATATGCACAATATGCTAATGAGATTTCTCTACCAGTATATTCTACATTATCTTTAGAAG
ATGCAGAATATGTAGCTAAAGAACTTGTAGCTGCAGTAGAAAAAGTTATGAAATAA

Upstream 100 bases:

>100_bases
TATTTACATAACAAAGGATACGGGATATTTTAAAGGTAAAAAATAAATAAAAATTATTTTAAAATAAAAAATCAATTGTT
AAATGAAGGGAAGGATTATA

Downstream 100 bases:

>100_bases
TAGCTCATTAATTTTAAAATCAATCTATAAGGTTAAAAATATTTATTAGATTATAAGTAAGTAGAAATATTTACTTATAA
TTTAATCTAATCTAATGAAA

Product: exopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MKKIPFSPPDITEREIDAVVEVLKSGWITSGPKTQQFENNLAEYCDTNKSVAVSSASAGLELILKDFDIKEGDEVITTPY
TYTATASVCLHRGIKPKFVDVAKDSFLIDIEKLADAITPKTKAIYTVDFGGVPVDYDAIKEVLKAKGREDIILVSDSAHS
LGAIYKGKKVGGQVDFHVFSFHAVKNLTTAEGGAITFENNNFKGREDLHKDFKLQSLHGQSKDALSKMKAGAWEYDIVTD
GHKCNMTDMGSAIGLVQLTRYEEMLRKREAIFDTYTKVLAEKDWAIIPFKKDETKETSYHLYPLRIKGFGEAERNEVIKI
LAEKDIATNVHFKPLPMFTLYKNLGYNIEDYPNAYAQYANEISLPVYSTLSLEDAEYVAKELVAAVEKVMK

Sequences:

>Translated_391_residues
MKKIPFSPPDITEREIDAVVEVLKSGWITSGPKTQQFENNLAEYCDTNKSVAVSSASAGLELILKDFDIKEGDEVITTPY
TYTATASVCLHRGIKPKFVDVAKDSFLIDIEKLADAITPKTKAIYTVDFGGVPVDYDAIKEVLKAKGREDIILVSDSAHS
LGAIYKGKKVGGQVDFHVFSFHAVKNLTTAEGGAITFENNNFKGREDLHKDFKLQSLHGQSKDALSKMKAGAWEYDIVTD
GHKCNMTDMGSAIGLVQLTRYEEMLRKREAIFDTYTKVLAEKDWAIIPFKKDETKETSYHLYPLRIKGFGEAERNEVIKI
LAEKDIATNVHFKPLPMFTLYKNLGYNIEDYPNAYAQYANEISLPVYSTLSLEDAEYVAKELVAAVEKVMK
>Mature_391_residues
MKKIPFSPPDITEREIDAVVEVLKSGWITSGPKTQQFENNLAEYCDTNKSVAVSSASAGLELILKDFDIKEGDEVITTPY
TYTATASVCLHRGIKPKFVDVAKDSFLIDIEKLADAITPKTKAIYTVDFGGVPVDYDAIKEVLKAKGREDIILVSDSAHS
LGAIYKGKKVGGQVDFHVFSFHAVKNLTTAEGGAITFENNNFKGREDLHKDFKLQSLHGQSKDALSKMKAGAWEYDIVTD
GHKCNMTDMGSAIGLVQLTRYEEMLRKREAIFDTYTKVLAEKDWAIIPFKKDETKETSYHLYPLRIKGFGEAERNEVIKI
LAEKDIATNVHFKPLPMFTLYKNLGYNIEDYPNAYAQYANEISLPVYSTLSLEDAEYVAKELVAAVEKVMK

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=385, Percent_Identity=33.7662337662338, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI2367285, Length=337, Percent_Identity=27.299703264095, Blast_Score=117, Evalue=9e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 43713; Mature: 43713

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIPFSPPDITEREIDAVVEVLKSGWITSGPKTQQFENNLAEYCDTNKSVAVSSASAGL
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCC
ELILKDFDIKEGDEVITTPYTYTATASVCLHRGIKPKFVDVAKDSFLIDIEKLADAITPK
EEEEECCCCCCCCCEEECCEEEHHHHHHHHHCCCCCCEEECCCCCEEEEHHHHHHHHCCC
TKAIYTVDFGGVPVDYDAIKEVLKAKGREDIILVSDSAHSLGAIYKGKKVGGQVDFHVFS
CCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCCEEEEEEEE
FHAVKNLTTAEGGAITFENNNFKGREDLHKDFKLQSLHGQSKDALSKMKAGAWEYDIVTD
EHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCEEHHHCCCCHHHHHHHHCCCEEEEEEEC
GHKCNMTDMGSAIGLVQLTRYEEMLRKREAIFDTYTKVLAEKDWAIIPFKKDETKETSYH
CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEE
LYPLRIKGFGEAERNEVIKILAEKDIATNVHFKPLPMFTLYKNLGYNIEDYPNAYAQYAN
EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHC
EISLPVYSTLSLEDAEYVAKELVAAVEKVMK
CCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKKIPFSPPDITEREIDAVVEVLKSGWITSGPKTQQFENNLAEYCDTNKSVAVSSASAGL
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCC
ELILKDFDIKEGDEVITTPYTYTATASVCLHRGIKPKFVDVAKDSFLIDIEKLADAITPK
EEEEECCCCCCCCCEEECCEEEHHHHHHHHHCCCCCCEEECCCCCEEEEHHHHHHHHCCC
TKAIYTVDFGGVPVDYDAIKEVLKAKGREDIILVSDSAHSLGAIYKGKKVGGQVDFHVFS
CCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCCEEEEEEEE
FHAVKNLTTAEGGAITFENNNFKGREDLHKDFKLQSLHGQSKDALSKMKAGAWEYDIVTD
EHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCEEHHHCCCCHHHHHHHHCCCEEEEEEEC
GHKCNMTDMGSAIGLVQLTRYEEMLRKREAIFDTYTKVLAEKDWAIIPFKKDETKETSYH
CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEE
LYPLRIKGFGEAERNEVIKILAEKDIATNVHFKPLPMFTLYKNLGYNIEDYPNAYAQYAN
EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHC
EISLPVYSTLSLEDAEYVAKELVAAVEKVMK
CCCCCEEEEECCCHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]