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The map label for this gene is degT [H]

Identifier: 226948112

GI number: 226948112

Start: 1037216

End: 1038337

Strand: Direct

Name: degT [H]

Synonym: CLM_0977

Alternate gene names: 226948112

Gene position: 1037216-1038337 (Clockwise)

Preceding gene: 226948111

Following gene: 226948113

Centisome position: 24.96

GC content: 29.68

Gene sequence:

>1122_bases
GTGAAGGTTAACTTTTATACATCTAAAAGAGAATATTTAGAAAAAAAAGCTGAATTTGATAAGGCTATATTTGATGTAGT
AGAAAGTGGAAGTTTTATACTTGGACCACAAGTTAAAAATTTTGAAGAAGCTATAAAAGAATATACAGGAGCAAAACATG
CTATAGGTGTAGCATCAGGTACAGATGCTTTAGTAATAGCTTCTCATATTTTAGGTTTTGAAAATGGAGCTGAAGTTATA
ACTTCACCATTTACATTCTTAGCATCTACATCTTGTATAGCTAAACATAGAGCTACACCTGTATTTGTAGATATAGACGA
AGAAACTTTTGAAATGGATTTAAACCAAATAGAATCAAAAGTAAATTCTAAAACAAAGGGAATACTTCCAATTCATTTAT
TCTCACAAATGAACAACATGGATAAAATAATGGAAATAGCAAATAAAAATGATTTAAGAGTTTTAGAAGATGCAGCAGAA
GCCTTTGGAATGAGATGGAAAGGTAATGGAGACAGCTATAGACATTCAGGAACTATAGGAGATATGGGTATTTTTTCATT
CTTCCCAACTAAAACATTAGGTGGATATGGTGACGGAGGTATGATAGTTACTAATAGTGACGAATTAGCAGAAAGAACTA
GAATGTTTAGAGTACATGGAGCATCTAAAAAATATCACTATGATTATATAGGATATAATTCAAGACTAGATAGTATGCAA
GCCGCTGTACTTTCAGTAAAATTAAAATATATAAATGATGCTATTAAAAAGAGAGAAGAAATAGCTAATATGTATATGGA
AAAATTACAGGATTGTGAATATATAAGATTCCCTAAAATAAAAGGAGATCAAAAACCAGTATATTATGTATTCAATATAC
GTGCTGAAAGAAGAGATGAACTGGTAGCTTACTTAAAAGAAAATGAAATAGGAAATAGTATTTACTATCCAATACCACTA
CACATGCAAAAATGTTTCAGCTACTTAGGACATAAAGAAGGAGACTTCCCAGTAGCAGAAAAAGTATCAAAAGAAATATT
AGCATTACCAATATATCCAGAATTAAAAGAAGAAGAAGTAGATTTTGTTTGTGAAACAATAAAGAAATTCTACACAAAAT
AA

Upstream 100 bases:

>100_bases
GGATGTTGATAAAAATAAATAAGATTTGTAATAAAATAAGCAAATCTAAAATAGAAAATTTTGATTATTAAATAAAAATA
AAAAAGAAAGAGTGATATAA

Downstream 100 bases:

>100_bases
AATTTAAAATGGAGTTATGTTACCCTTGGTTTAAAAAAGGGATATGTGGCGAGATCGGCAACTCACTTCAATAAGAGATT
CTAATTTATTTTTTCTTAAA

Product: putative pleiotropic regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MKVNFYTSKREYLEKKAEFDKAIFDVVESGSFILGPQVKNFEEAIKEYTGAKHAIGVASGTDALVIASHILGFENGAEVI
TSPFTFLASTSCIAKHRATPVFVDIDEETFEMDLNQIESKVNSKTKGILPIHLFSQMNNMDKIMEIANKNDLRVLEDAAE
AFGMRWKGNGDSYRHSGTIGDMGIFSFFPTKTLGGYGDGGMIVTNSDELAERTRMFRVHGASKKYHYDYIGYNSRLDSMQ
AAVLSVKLKYINDAIKKREEIANMYMEKLQDCEYIRFPKIKGDQKPVYYVFNIRAERRDELVAYLKENEIGNSIYYPIPL
HMQKCFSYLGHKEGDFPVAEKVSKEILALPIYPELKEEEVDFVCETIKKFYTK

Sequences:

>Translated_373_residues
MKVNFYTSKREYLEKKAEFDKAIFDVVESGSFILGPQVKNFEEAIKEYTGAKHAIGVASGTDALVIASHILGFENGAEVI
TSPFTFLASTSCIAKHRATPVFVDIDEETFEMDLNQIESKVNSKTKGILPIHLFSQMNNMDKIMEIANKNDLRVLEDAAE
AFGMRWKGNGDSYRHSGTIGDMGIFSFFPTKTLGGYGDGGMIVTNSDELAERTRMFRVHGASKKYHYDYIGYNSRLDSMQ
AAVLSVKLKYINDAIKKREEIANMYMEKLQDCEYIRFPKIKGDQKPVYYVFNIRAERRDELVAYLKENEIGNSIYYPIPL
HMQKCFSYLGHKEGDFPVAEKVSKEILALPIYPELKEEEVDFVCETIKKFYTK
>Mature_373_residues
MKVNFYTSKREYLEKKAEFDKAIFDVVESGSFILGPQVKNFEEAIKEYTGAKHAIGVASGTDALVIASHILGFENGAEVI
TSPFTFLASTSCIAKHRATPVFVDIDEETFEMDLNQIESKVNSKTKGILPIHLFSQMNNMDKIMEIANKNDLRVLEDAAE
AFGMRWKGNGDSYRHSGTIGDMGIFSFFPTKTLGGYGDGGMIVTNSDELAERTRMFRVHGASKKYHYDYIGYNSRLDSMQ
AAVLSVKLKYINDAIKKREEIANMYMEKLQDCEYIRFPKIKGDQKPVYYVFNIRAERRDELVAYLKENEIGNSIYYPIPL
HMQKCFSYLGHKEGDFPVAEKVSKEILALPIYPELKEEEVDFVCETIKKFYTK

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=376, Percent_Identity=29.2553191489362, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI2367285, Length=353, Percent_Identity=28.0453257790368, Blast_Score=135, Evalue=5e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42526; Mature: 42526

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVNFYTSKREYLEKKAEFDKAIFDVVESGSFILGPQVKNFEEAIKEYTGAKHAIGVASG
CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEEECCC
TDALVIASHILGFENGAEVITSPFTFLASTSCIAKHRATPVFVDIDEETFEMDLNQIESK
CCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
VNSKTKGILPIHLFSQMNNMDKIMEIANKNDLRVLEDAAEAFGMRWKGNGDSYRHSGTIG
HCCCCCCEEEHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCC
DMGIFSFFPTKTLGGYGDGGMIVTNSDELAERTRMFRVHGASKKYHYDYIGYNSRLDSMQ
CCHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHEEECCCCCEEEEECCCCCHHHHHH
AAVLSVKLKYINDAIKKREEIANMYMEKLQDCEYIRFPKIKGDQKPVYYVFNIRAERRDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECHHHHHH
LVAYLKENEIGNSIYYPIPLHMQKCFSYLGHKEGDFPVAEKVSKEILALPIYPELKEEEV
HHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCCCCCHHHH
DFVCETIKKFYTK
HHHHHHHHHHHCC
>Mature Secondary Structure
MKVNFYTSKREYLEKKAEFDKAIFDVVESGSFILGPQVKNFEEAIKEYTGAKHAIGVASG
CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCEEEECCC
TDALVIASHILGFENGAEVITSPFTFLASTSCIAKHRATPVFVDIDEETFEMDLNQIESK
CCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
VNSKTKGILPIHLFSQMNNMDKIMEIANKNDLRVLEDAAEAFGMRWKGNGDSYRHSGTIG
HCCCCCCEEEHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCC
DMGIFSFFPTKTLGGYGDGGMIVTNSDELAERTRMFRVHGASKKYHYDYIGYNSRLDSMQ
CCHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHEEECCCCCEEEEECCCCCHHHHHH
AAVLSVKLKYINDAIKKREEIANMYMEKLQDCEYIRFPKIKGDQKPVYYVFNIRAERRDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECHHHHHH
LVAYLKENEIGNSIYYPIPLHMQKCFSYLGHKEGDFPVAEKVSKEILALPIYPELKEEEV
HHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHEEECCCCCCCHHHH
DFVCETIKKFYTK
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]