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The map label for this gene is yodJ [H]

Identifier: 226947862

GI number: 226947862

Start: 771139

End: 771855

Strand: Direct

Name: yodJ [H]

Synonym: CLM_0717

Alternate gene names: 226947862

Gene position: 771139-771855 (Clockwise)

Preceding gene: 226947860

Following gene: 226947863

Centisome position: 18.56

GC content: 28.03

Gene sequence:

>717_bases
ATGAAAAAGGGATTTAAAAATAGTTTATTATTTATTATAATAATAATAATTTGTGGATTTTGTTATATGTTAAAAAATAC
AATACTAAAGTTAGAGAATTCAAGTGTTATAGGAATTAATGCTAGTTTAGCTGATGAAGATAAATTAGTGAAAGAAAATG
GTGTTAATATAAGTCCAGAAAGACTATTAGTAAATAGAGAGAATGGACTAAATAAAGATTATATACCAGAAGGGCTAAGT
ATACCCAACATACCATTTTCAGATAGATCAGATGATGAAGAAAAACATGTAGCAGGAATTATTGTAAAACCATTAGAAGA
ATTGATAAATACAGCTAAAGAAGAAGGGATAATATTACTTGGTAACTCAGGTTATAGATCTTATAGGTCACAAAAAAATA
TTTATAAGAATCGGGCGAGATCTCAGGGAAAAGAGCTTGCAGATGCATATGTAGCTAAACCAGGATTTAGTGAACATCAA
ACAGGACTATGTATTGATATTACTAATAAAGATAGATATTTTGTGCAAGGAACGAAAGAGGCTGATTGGCTTGCAAAAAA
TTGTTACAGATTTGGTTTTATTGTAAGATATCCAAAGGAAAAGAAGAGTATAACAAATATAGAATATGAACCTTGGCATA
TTAGATATGTTGGAAAAGAAGCTGCTAAATATATTTATGATAACAAAATTACATTAGAGGAATACTTAGGTAAATAA

Upstream 100 bases:

>100_bases
AGTCATCGGATAAACTTAAGATTTCGTAAGAATTTTTTATAATTCTTGTAAACTCTATCTTCTACAATGAAACTACTATA
TTAGAAGGGAAGTAGAAGAT

Downstream 100 bases:

>100_bases
TTATATAATTGGAGGGAAATATGAATAATAATATTCTTGTGGTAGATGATGAAAAAGAAATAAGAGATTTATTAGAAATA
AATCTTATAAATGAAGGATA

Product: D-alanyl-D-alanine carboxypeptidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKKGFKNSLLFIIIIIICGFCYMLKNTILKLENSSVIGINASLADEDKLVKENGVNISPERLLVNRENGLNKDYIPEGLS
IPNIPFSDRSDDEEKHVAGIIVKPLEELINTAKEEGIILLGNSGYRSYRSQKNIYKNRARSQGKELADAYVAKPGFSEHQ
TGLCIDITNKDRYFVQGTKEADWLAKNCYRFGFIVRYPKEKKSITNIEYEPWHIRYVGKEAAKYIYDNKITLEEYLGK

Sequences:

>Translated_238_residues
MKKGFKNSLLFIIIIIICGFCYMLKNTILKLENSSVIGINASLADEDKLVKENGVNISPERLLVNRENGLNKDYIPEGLS
IPNIPFSDRSDDEEKHVAGIIVKPLEELINTAKEEGIILLGNSGYRSYRSQKNIYKNRARSQGKELADAYVAKPGFSEHQ
TGLCIDITNKDRYFVQGTKEADWLAKNCYRFGFIVRYPKEKKSITNIEYEPWHIRYVGKEAAKYIYDNKITLEEYLGK
>Mature_238_residues
MKKGFKNSLLFIIIIIICGFCYMLKNTILKLENSSVIGINASLADEDKLVKENGVNISPERLLVNRENGLNKDYIPEGLS
IPNIPFSDRSDDEEKHVAGIIVKPLEELINTAKEEGIILLGNSGYRSYRSQKNIYKNRARSQGKELADAYVAKPGFSEHQ
TGLCIDITNKDRYFVQGTKEADWLAKNCYRFGFIVRYPKEKKSITNIEYEPWHIRYVGKEAAKYIYDNKITLEEYLGK

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 27242; Mature: 27242

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGFKNSLLFIIIIIICGFCYMLKNTILKLENSSVIGINASLADEDKLVKENGVNISPE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCHHHHHHCCCCCCHH
RLLVNRENGLNKDYIPEGLSIPNIPFSDRSDDEEKHVAGIIVKPLEELINTAKEEGIILL
HEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEE
GNSGYRSYRSQKNIYKNRARSQGKELADAYVAKPGFSEHQTGLCIDITNKDRYFVQGTKE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEECCCC
ADWLAKNCYRFGFIVRYPKEKKSITNIEYEPWHIRYVGKEAAKYIYDNKITLEEYLGK
HHHHHHHHHHHEEEEECCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCEEHHHHHCC
>Mature Secondary Structure
MKKGFKNSLLFIIIIIICGFCYMLKNTILKLENSSVIGINASLADEDKLVKENGVNISPE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCHHHHHHCCCCCCHH
RLLVNRENGLNKDYIPEGLSIPNIPFSDRSDDEEKHVAGIIVKPLEELINTAKEEGIILL
HEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEE
GNSGYRSYRSQKNIYKNRARSQGKELADAYVAKPGFSEHQTGLCIDITNKDRYFVQGTKE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEECCCC
ADWLAKNCYRFGFIVRYPKEKKSITNIEYEPWHIRYVGKEAAKYIYDNKITLEEYLGK
HHHHHHHHHHHEEEEECCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]